CmoCh04G011340 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G011340
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S26
Location	Cmo_Chr04: 5780497 .. 5787220 (+)
RNA-Seq Expression	CmoCh04G011340
Synteny	CmoCh04G011340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGTCGAATGGATCGGGCAGTGGAGTGGTTCGCTTCAAAGTATCTCCCTCAACCGCCTGCGTTATTCAGAAGGGTGACATCACAAAGTGGTTCATCGATGGTTCTTCTGATGCCATTGTCGGTGACTCTATCTTTCTATTTTTGCTCAGAATCGGCTGTTTTTATTTAGGGTTTATACTTATTTGCTTACTGGAAAGGGTGGTGGGAAGTAATCGGTTGAAAGCTCCTGTGTTTTTGAGTAATGATCAGAACCATCTTTTGTTCAAATGATGGAATGGTTTGTTTTTGATGAATCGCTTTAAGTTTGTAGTTAAGTAAGAAATGGGTAGATGCTGTAGGAATTGCTTCCCCATTGCTATGCTTCGCGACCTGGAGGTATCTAGAATCATCAATGATTGGGGACTTGTATAGATTTAGGTAGATGCTGTAGGAATTGCTTCCCCAATATATATATTTTTTGACTCCAAAAAGTGGTTGCATTATAAGCTAAACCATTGCTCCAAGAAAGAAGATAAAGAAGTAGGTTATCAAAGTAATGAACTACCTTGTGGGTTTAAGGCAAGGTGACCTTTTCTTTTCCTCTTGGTGGTTGATGAACTAAGCAGATTCGTGTTGTCAGGTGTGGAGAAAAGAGTGGATGGTGATTGAGGGGTTTAAGGTCGGGCAGGATTTGGTTCACATTTCGCATATTCAGTTCGTAGACGAAATCTATATGTATAGAAGATTTAACCCCACTTACTAAGTAAATTAACTGTGAGATCTCACATCAGTTGGGGAAGAGAACGAAACATTCTTTATAAGGGTGTGGAAATCTCTCCCTAGCATACGCGTTTTAAAAAGCTTGAGGGAAAGCTCGAAAGGGAAAGCCCAAAAAGGACAATGTCTGTTAGCGGTGAGCTTGGGCCGTTACACTAACAAACTCAAACTTAAAAATTACAAAACTATTACTAATTTTTCTATATCCGTAAGAAAGATCCATATGTTTTGTCCTGTATTTTCTTGTTTTTCAGAGTTTCCAGTCCCATGAAATCTATTAAACTTCGGTTTCTTTGGCTTAAATCTTATTTAGGTTAATCCAGCTAATGAAGTAATGCTTGGAGGTGGTGGTGCTGATGGAGGTATGGAGTTTCAACTGTGTTTTAGTTTTATAACTTGTTACACGAACTTGCCATCTTGAATATTCTTTCCTCATCGTTTTGTAGCGATACATAATGCTGCTGGACCTGATCTCGTGCAAGCATGTTATTCTGTCCAAGAAGTCCAACCTGGAATCCGCTGTCCAACTGGAGAAGCAAGGATTACTCCGTACGTAACTGATCACGACCATTAGTTTTGTTTGTAGATGCTAATGTGATCTTCAAATGCAGAGGTTTTCGGTTGCCAGCATCTCATGTAATCCATACCGTTGGACCCATCTACAACGCCAGTAGTAACCCCCAGGCCTTATTGAGAAGCGCATATAGGTTCTTGTTATGTAATTGCACTTCCTTTTCATTTTGATTTACCATTCAGGACTTATCCATTTTTATTGCCATATTGATTTAGAAATTCCTTGGCTGTGGCAAAGGAGAATAACATTCAATATATTGCCTTTCCCGCCATATCCTGTGGTGTATATCGGTAAGTTATGATATTGATTTAGAAATTTCAGCATTCGTTAGCTTTATACCGTTTTTTAATTATAAAAAATCAGTAGTTCCCTAATTGATTGATCAGGTTCCTCTTGATTTAGTTTTCTAATGGCATGGGTTTGTGTGTGTGTTTGTTTATACCATTTTTCTACTATAAAAGATTAGTTGGTTAATGATTTGATTGATCCAGATTCCTCTTGAAAATATTTGTTTAGTGATTTTTATTATACACTTGCAGATATCCTTTTGATGAAGCTGCCACAATAGCCTTATCAACCGTTAAAGAGTTTTCCAATGGCTTGAAAGAGGTAAGGCATTGTTCTATGGTACTTAGGGAATGTATCCTTGTTTTTGTTACAGTATGTGAATATGTTCCTAAAGTATTTTTGACATGTTTAGATTATTCCATCACGGTCCTCTTTAGCGTCGACCTCTTATCTTTGATTGGGAAGTTTTCGGTTAGCCCTAGGAGATCGATCATCTTTGGGGGCACTGTCCTGTCAATGGGTTTTCTTATAGTTCCTTCTTCTATTGCATGCTGATCTGCTTTCTGCCCATTCTTTCAAGTGTTTGAGACTTTCTTAGCTTTACTCGAGCCACTTTTGAAGCTCGGTGGCACTCTTTCTAACAGAGAGTGGTCAATAAGATGAGACATCATAGGTTGCTGACTACTAGTAACCTCGAGAGGACCCTTTTGAGTTTGGGAACTTTTTTGACAATGAAAACTAGACCGTGCCCCATTAAGCGACTGGACCAAGTTCTTTGAGAAAATGCTTTGAAATTCGGTCAACAAGTCTTGGATGCGATTCTCTTGTCGTTTGTAAAGATGTGGAAGGGTCATACAAATAACAGCTCAAGTCCACTTCTAGCAGATATCGTCATTTTTAGGCTTTCACTTTCAAGCTTCCCCTTATGGTTTTTAAAACGCGTCTGATAGGGAGAGATTTTCACATTCTTATAAAAAATATTTTGTTTCCTTTTCCAACTGACGTGGGATCTCACAATATTGATGGATTATGGATTGTCTCTCGGATTGCAATGACGTGCTCTACAACTGAACAACACACTTGGCTTTTTTAAAGCAATGGGAATTCCATTATTTGCATTGACGTGCTGTTACATTATTTGCAGGTACACTTTGTCCTTTATTCTTCTGATATTTACAATGTTTGGTTGGAGAAGGCAAATGAACTGCTCAAGAACTAACTATATAGTGCAGTCTGCCTTGGAATGGTAATGGTATCAATCAATCAACCAATGATTCACCTTGGACATATAAAGTCTTTGTGTTGCTTTCATCTGAACTCAGTCATGCTTTCTTATCAAACACTCTTAAAGGGGTTATTAGAATAAACGTTGGCTCCTTTCTCAAATGGTAAGAGTTGTATAAGTGCATCCTCGACTCGTCTCAATCAATCCACCTCTTATAGCTTTTCTATGTTTAATGCTTGGAAATGCTTTCTTGATCAGACAATCATTCAACCGTATAAAACTGTAAGCTACATTATGTTATTCAACCGTATAAAACTGTAAGCTACATTATGTTGAATCTACATCAGACTACGTACAAGGATCCGAACGGTATAAAATTGTTTTTTTCTAAATTTTATTTTTTAAAATTAATGTGACATAAACAATTAGATTTAATCCTATGTATGTGTATATTCTGACTTAGTTACAAATTTATTTTTCTTTATCATAAATTATAAAAGGCATGTGGTCGATGATACTTAGACGTTTTTGTGAGTTTTTTTGTAATGATTTTTTAGATGTTTGTTTTTACTTTTAAAAACTCACAATATTATTATTTACAATTAAAAATGCTATTTTAATATTTTGTATGTTATTATTTAATTTTAGTTTAGAAAAAAACACAAACATTTAATCCCATGTACTAAATATCTTATATATTTAAACATAAACGTTGGTTATTTTGGGCATTAAAATTTAAAATTTTTATATCTATGCCCATAAAACAAATACGCCAAATTATTTACATTAGTTTTTTTTTTCTTAAATTCGTTTAATTCTTATAGTTTATGTATTTTTAAATATTTAAATTGTAAAATTTTATTAATTTAAGATAAATGAGATCAAATTGAATATTTGAGGGCCTGATTGTACAAATCTATATAGTTGAGGGGTCTTTTTGCAAATTTTATTTTCTCGGTGTTGGTTTGGCCCGCGGGACCGGAGATCTATATAAAGCGTTTACCGGGAACTTCTTTCGACTTTTACAATCAGCATTTGCCCACAAAAAAACCCTAATCGTTGCATTTTCTCTCTCGCTGCTTCGTCTGAAAGCTCTGCAGCTTTTAAACAATGGTAAGATCATTAGCCCGTCACCTTTTCCTCTGAATCTTCTTGTTTTAAATCCTTCTCCGTTCATTTATTTTCTGCTTTTGGTTCTGCCAGACTTTCAAGCGCAGGAACGGTGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCAGGTGCTCCAACTGCGGCAAATGCTGCCCCAAGGTTATTGTTTTACTCATCTTTCTGCGTGCTTTTTGCTTGCATTTTTAAGTAGTTTAATGGCGGCGGTCAAATCTATACGTTGTGCTAATGTTTCCTTTGCGGAATTGTGTTATTTTGTTTTTACTTTTGTTTTGATGCTTTATTGCTAGTATTACTGGAGTATTTGTGATTGATTGATCTAGAAATAAGTATCCGCCAAGTTCTGGGGATATGTTAGTATCTATATGAGTTTGTATTTGTATTGTTGTTAAAAGATTGTTTAGGTGATATTTTATAGGTAAAAGAGCTAGACTTGATGTTTAGCTACATTTTAAATTTCTTTTCGATGAAACACATTGATAGCATTTTTTGTTTCAGAACATTTTATAGGATAAGTTTTTTTGTTTAAAAAATGGAATTCCCGTAAGCATTCCAAAACTCGATGCTTTATTAGGCTTGAGGCTTTCCTGGAGACAAGATTCTAACTTTTAGCCTCTAGACTTATGTCTTCTTTGGACCGTAAGGGTTCCTAATCACACTATAGTTTTGGACGGAGTGAATTTGGAGTGTCCATTGACTATTGAGCAAGAGAAGTTCAATTTTATTTTAGCTAAGAGCTGAAGTTGATTAAATCTAACTAAATGAGTTTTGATTGATGAGGATAGGACAAGGCTATTAAGAGGTTTCTCGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCGTAAGTTGTTCTGTCCTCTCCTGCTAGCTTTTGGTTGCTTTATTTCATTTAACAACAATCTTTTTGTTCAATGTCTGATATAGATCTTTGTTCTCTGTGCAGAATACACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGTTAGTCTTTGCATAAAATATTTTAAACTTTGATTCATAACAGAATAATCATATGAACAATGAATTTGATGAAGTGGATCTACTTTGATTCATTTGGATTATGTATATTTTAATGACGATACCAACTATTTGGTAATGCTATTGATGCTCGTGTCGAAGATCAACTACATATCTTCTACTTGTTAGTGAGTACCACTCATGATTGTTAGTCGGTCCATTTAGAGGCACTTAAGCATGTTTACTTCCTAACAACAGATAATTTTTTTATTCGGCAATACTGATATTCGGAGTAGCCTCTGATGGTTTGTTACCTTTTCCCGTTTCTGTGTTTGTTTCAGGATGATCAGCCAAAGCCTGGCCAGCCAGGTCAAGCACCTCGTCCTGCTGGAGCTGGAATTCCTGCTCGTGTATAGAAGAAACCTTTATATGGCTTCTACGAGCAATACGTAGGAATCTTTACAGTCGCTCTATTATAGTTTGGTCGTTTTCTTTGGGGATGGAAGTGAATTTTAGAATGAATATGGAAACTTACCCGAGAATTTTGCAGGTAGGAACGTGGGAGGTAAAGAACAGGTTTATTGAGTTAGTTAATGGATTTTTCTACAGTTTCTTGTTTGGATACTCCAATTTGTTTCTTAAATCATCATTTTACTGTCCGTCTTTCCTGCTTTAATCATATCATATGGTATAGGGAAGGGGCAACGAGAAAGCAGCATGAAAATTAGATTAAGATTGTTAATTCCATACCCCTTTATGACATTTAATTTCCATCCCAACAGCAGGTGTATGTTTGTGTCTGTGACATCTTTCCTTTAGCCTTTGAAATATGTAGGTTGCCGTTTCGTGTAGGGGAGAAAATTTCCAGGACTTGACTTTATAAAAATGTTGAAAATATTGATAAATTGTTTAATATTTTATTTTATCTATTTATCCTATTTTATCAATTTCTTAATGATTTAATGAAAATGTTGATTATCTTCATGTTGACTAAAATTTAAAATCTGAGAAAAGTAACACGTCGATTTTAAATGGCATTAGAACAGCTTGTCTGCCGATCTAACTCTATGAATTTATGCATTACAATTCTATTAATTTTGGTGGGCTCGTACTTGAACAAAAGAACCATTTGGCAAAAACTCAATGGGTGAATGGCATTAATTTGTGCAGCAGAAATTGGTTGGGAGATTCAATGCAACCCAACGAGTTTAATGGCTCTGAATTTGATAAGAACCAGAGATCTCTCCCTTTCGAAATTGGAGTTTCCATCGATGGCAAAGAGAGTAAGGATGGTATCAGTGTTCTTACTTACTTTGCTCCTCTCCTTGTCGTCCTCTCACAAAAAATTATTCAATGAGGCAACCGAACACACCGAAAAGCTAGCATTTCATGGCTTCCATAAATCGTACCTTCAAATTTATAACAACTCCAAATATGGAATTTTGCAGCTCGACAATGGTTTGGGAAAAACTCCTCCCATGGGGTCTCTCTCTTTCCCTTTCTCTCAATCTCTCATCCCTTTTCTTTCTAATAACAGTGTTAATAACAGTGTTTTTATGCCATCTTTTCTTTTGCTTATCAGATGGAATAGTTGGAACCATTTTGGCTGCAGTATAG

mRNA sequence

ATGGCAATGTCGAATGGATCGGGCAGTGGAGTGGTTCGCTTCAAAGTATCTCCCTCAACCGCCTGCGTTATTCAGAAGGGTGACATCACAAAGTGGTTCATCGATGGTTCTTCTGATGCCATTGTCGAAATGGGTAGATGCTGTAGGAATTGCTTCCCCATTGCTATGCTTCGCGACCTGGAGGTTAATCCAGCTAATGAAGTAATGCTTGGAGGTGGTGGTGCTGATGGAGCGATACATAATGCTGCTGGACCTGATCTCGTGCAAGCATGTTATTCTGTCCAAGAAGTCCAACCTGGAATCCGCTGTCCAACTGGAGAAGCAAGGATTACTCCATATCCTTTTGATGAAGCTGCCACAATAGCCTTATCAACCGTTAAAGAGTTTTCCAATGGCTTGAAAGAGACTTTCAAGCGCAGGAACGGTGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCAGGTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCTATTAAGAGGTTTCTCGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCAATACACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGATGATCAGCCAAAGCCTGGCCAGCCAGGTCAAGCACCTCGTCCTGCTGGAGCTGGAATTCCTGCTCATGGAATAGTTGGAACCATTTTGGCTGCAGTATAG

Coding sequence (CDS)

ATGGCAATGTCGAATGGATCGGGCAGTGGAGTGGTTCGCTTCAAAGTATCTCCCTCAACCGCCTGCGTTATTCAGAAGGGTGACATCACAAAGTGGTTCATCGATGGTTCTTCTGATGCCATTGTCGAAATGGGTAGATGCTGTAGGAATTGCTTCCCCATTGCTATGCTTCGCGACCTGGAGGTTAATCCAGCTAATGAAGTAATGCTTGGAGGTGGTGGTGCTGATGGAGCGATACATAATGCTGCTGGACCTGATCTCGTGCAAGCATGTTATTCTGTCCAAGAAGTCCAACCTGGAATCCGCTGTCCAACTGGAGAAGCAAGGATTACTCCATATCCTTTTGATGAAGCTGCCACAATAGCCTTATCAACCGTTAAAGAGTTTTCCAATGGCTTGAAAGAGACTTTCAAGCGCAGGAACGGTGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCAGGTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCTATTAAGAGGTTTCTCGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCAATACACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGATGATCAGCCAAAGCCTGGCCAGCCAGGTCAAGCACCTCGTCCTGCTGGAGCTGGAATTCCTGCTCATGGAATAGTTGGAACCATTTTGGCTGCAGTATAG

Protein sequence

MAMSNGSGSGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVEMGRCCRNCFPIAMLRDLEVNPANEVMLGGGGADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITPYPFDEAATIALSTVKEFSNGLKETFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPAGAGIPAHGIVGTILAAV

Homology

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BLAST of CmoCh04G011340 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 215.7 bits (548), Expect = 6.5e-55
Identity = 106/126 (84.13%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 136 TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 195
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 196 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPA 255
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPRPA
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRPA 121

Query: 256 GAGIPA 262
           G G  A
Sbjct: 122 GPGAAA 127

[Close]

BLAST of CmoCh04G011340 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 215.7 bits (548), Expect = 6.5e-55
Identity = 106/126 (84.13%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 136 TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 195
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 196 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPA 255
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPRPA
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRPA 121

Query: 256 GAGIPA 262
           G G  A
Sbjct: 122 GPGAAA 127

[Close]

BLAST of CmoCh04G011340 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.9e-54
Identity = 107/126 (84.92%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 136 TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 195
           TFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 196 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPA 255
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPRPA
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRPA 121

Query: 256 GAGIPA 262
           G G PA
Sbjct: 122 G-GAPA 126

[Close]

BLAST of CmoCh04G011340 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 2.4e-49
Identity = 98/133 (73.68%), Postives = 114/133 (85.71%), Query Frame = 0


Query: 136 TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 195
           TFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D 
Sbjct: 2   TFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDG 61

Query: 196 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQP-GQAPRP 255
           Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R+PP+RF RRR+D+P+  +P G AP P
Sbjct: 62  YVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRPQGPRPGGGAPAP 121

Query: 256 AGAGIPAHGIVGT 268
            GA  PA  +  T
Sbjct: 122 GGAAAPAPNVART 133

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BLAST of CmoCh04G011340 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.0e-37
Identity = 80/119 (67.23%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 136 TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 195
           TFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y Q
Sbjct: 2   TFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQ 61

Query: 196 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 255
           Y LPKLY K+ YC++CAIHS VVR RSR  RR+R PP RF  +R    +PG PG  PRP
Sbjct: 62  YALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPG--PRP 117

[Close]

BLAST of CmoCh04G011340 vs. ExPASy TrEMBL
Match: A0A7J7E269 (Macro domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW01G00538 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.6e-91
Identity = 194/341 (56.89%), Postives = 217/341 (63.64%), Query Frame = 0


Query: 3   MSNGSGSGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVEMGRCCRNCFPIAMLRDLEV 62
           MS  S +G  RF++SPS+   I+KGDIT WF+DGSSDAI                    V
Sbjct: 10  MSKASFAG-TRFQLSPSSVLKIEKGDITLWFVDGSSDAI--------------------V 69

Query: 63  NPANEVMLGGGGADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITP---------- 122
           N  NE MLGGGGADGAIH AAGP+L +ACY V EV+PG+RCPTGEARITP          
Sbjct: 70  NSVNERMLGGGGADGAIHRAAGPELKEACYKVPEVRPGVRCPTGEARITPGFKLPVSHVI 129

Query: 123 -----------------------------------------------YPFDEAATIALST 182
                                                          YP++EAA++A+ST
Sbjct: 130 HTVGPIYDVDPNPKASLTSAYRNSLAVAKDNKIQYVAFPAISCGAYGYPYEEAASVAIST 189

Query: 183 VKEFSNGLKE-----------------------TFKRRNGGRNKHGRGHVKFIRCSNCGK 242
           +KEF+NG+KE                       TFKRRNGGRNKHGRGHVKFIRCSNCGK
Sbjct: 190 IKEFANGIKEVHFVLFFDEIYEVWLKKAKELLKTFKRRNGGRNKHGRGHVKFIRCSNCGK 249

Query: 243 CCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRS 261
           CCPKDKAIKRFLVRNIVEQAAVRD+QEA VY+QYTLPKLYAK+QYCVSCAIHSHVVRVRS
Sbjct: 250 CCPKDKAIKRFLVRNIVEQAAVRDIQEAGVYEQYTLPKLYAKVQYCVSCAIHSHVVRVRS 309

[Close]

BLAST of CmoCh04G011340 vs. ExPASy TrEMBL
Match: M4DKF2 (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 6.0e-88
Identity = 183/310 (59.03%), Postives = 199/310 (64.19%), Query Frame = 0


Query: 9   SGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVEMGRCCRNCFPIAMLRDLEVNPANEV 68
           SG V F +S S+   I KGDITKW +D SSDAI                    VNPANE 
Sbjct: 495 SGAV-FSLSDSSILKIVKGDITKWSVDASSDAI--------------------VNPANER 554

Query: 69  MLGGGGADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITP---------------- 128
           MLGGGGADGAIH AAGP L  ACY V E +PG+RCP GEARITP                
Sbjct: 555 MLGGGGADGAIHRAAGPQLRAACYEVSEARPGVRCPLGEARITPGFNLPASRVIHTVGPI 614

Query: 129 -----------------------------------------YPFDEAATIALSTVKEFSN 188
                                                    YPFDEAA + +ST+KEF++
Sbjct: 615 YDSALNPKESLTNSYRNSLRVAKDNNIKYIAFPAISCGIYGYPFDEAAVVGISTIKEFAS 674

Query: 189 GLKETFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEAC 248
             KETFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA 
Sbjct: 675 DFKETFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEAS 734

Query: 249 VYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQA 262
           VYD YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF+RR++D PKPGQPGQA
Sbjct: 735 VYDGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFVRRKEDAPKPGQPGQA 783

[Close]

BLAST of CmoCh04G011340 vs. ExPASy TrEMBL
Match: A0A0D3C5G6 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 6.5e-82
Identity = 182/346 (52.60%), Postives = 197/346 (56.94%), Query Frame = 0


Query: 9   SGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVEMGRCCRNCFPIAMLRDLEVNPANEV 68
           SG V F +S S+   I KGDITKW +D SSDAI                    VNPANE 
Sbjct: 535 SGAV-FNLSDSSILQILKGDITKWSVDASSDAI--------------------VNPANER 594

Query: 69  MLGGGGADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITP---------------- 128
           MLGGGGADGAIH AAGP L  ACY V EV+PG+RCP GEARITP                
Sbjct: 595 MLGGGGADGAIHRAAGPQLRAACYEVSEVRPGVRCPLGEARITPGFNLPASRVIHTVGPI 654

Query: 129 -----------------------------------------YPFDEAATIALSTVKEFSN 188
                                                    YPFDEAA + +ST+KEF+N
Sbjct: 655 YDSAVNPKESLTNSYRNSLTVAKENNIKYIAFPAISCGIYGYPFDEAAVVGISTIKEFAN 714

Query: 189 GLKE----------------------------------------TFKRRNGGRNKHGRGH 248
             KE                                        TFKRRNGGRNKH RGH
Sbjct: 715 DFKEVHFVLFAEDIYSVRRQEESNPSSSFSAHEEKRSQSRIKEMTFKRRNGGRNKHNRGH 774

Query: 249 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSC 258
           VK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VYD YTLPKLYAK QYCVSC
Sbjct: 775 VKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYDGYTLPKLYAKTQYCVSC 834

[Close]

BLAST of CmoCh04G011340 vs. ExPASy TrEMBL
Match: A0A3P6CJE6 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA04T18560Z PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 6.5e-82
Identity = 184/356 (51.69%), Postives = 199/356 (55.90%), Query Frame = 0


Query: 9   SGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVEMGRCCRNCFPIAMLRDLEVNPANEV 68
           SG V F +S S+   I KGDITKW +D SSDAI                    VNPANE 
Sbjct: 530 SGAV-FSLSDSSILKIVKGDITKWSVDASSDAI--------------------VNPANER 589

Query: 69  MLGGGGADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITP---------------- 128
           MLGGGGADGAIH AAGP L  ACY V E +PG+RCP GEARITP                
Sbjct: 590 MLGGGGADGAIHRAAGPQLRAACYEVSEARPGVRCPLGEARITPGFNLPASRVIHTVGPI 649

Query: 129 -----------------------------------------YPFDEAATIALSTVKEFSN 188
                                                    YPFDEAA + +ST+KEF+N
Sbjct: 650 YDSALNPKESLTNSYRNSLRVAKENNIKYIAFPAISCGIYGYPFDEAAVVGISTIKEFAN 709

Query: 189 GLKE----------------------------------------------TFKRRNGGRN 248
             KE                                              TFKRRNGGRN
Sbjct: 710 DFKEVHFVLFAEDIYSVWVNKAKERVNPSSSFSAHEEKRSQPRIIKDGIFTFKRRNGGRN 769

Query: 249 KHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKM 262
           KH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VYD YTLPKLYAK 
Sbjct: 770 KHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYDGYTLPKLYAKT 829

[Close]

BLAST of CmoCh04G011340 vs. ExPASy TrEMBL
Match: A0A3P6CZH7 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC4T28343H PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.1e-81
Identity = 182/348 (52.30%), Postives = 197/348 (56.61%), Query Frame = 0


Query: 9   SGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVEMGRCCRNCFPIAMLRDLEVNPANEV 68
           SG V F +S S+   I KGDITKW +D SSDAI                    VNPANE 
Sbjct: 535 SGAV-FNLSDSSILQILKGDITKWSVDASSDAI--------------------VNPANER 594

Query: 69  MLGGGGADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITP---------------- 128
           MLGGGGADGAIH AAGP L  ACY V EV+PG+RCP GEARITP                
Sbjct: 595 MLGGGGADGAIHRAAGPQLRAACYEVSEVRPGVRCPLGEARITPGFNLPASRVIHTVGPI 654

Query: 129 -----------------------------------------YPFDEAATIALSTVKEFSN 188
                                                    YPFDEAA + +ST+KEF+N
Sbjct: 655 YDSAVNPKESLTNSYRNSLTVAKENNIKYIAFPAISCGIYGYPFDEAAVVGISTIKEFAN 714

Query: 189 GLKE------------------------------------------TFKRRNGGRNKHGR 248
             KE                                          TFKRRNGGRNKH R
Sbjct: 715 DFKEVHFVLFAEDIYSVWVNKAKESNPSSSFSAHEEKRSQSRIKEMTFKRRNGGRNKHNR 774

Query: 249 GHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCV 258
           GHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VYD YTLPKLYAK QYCV
Sbjct: 775 GHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYDGYTLPKLYAKTQYCV 834

[Close]

BLAST of CmoCh04G011340 vs. NCBI nr
Match: KAF5752623.1 (hypothetical protein HS088_TW01G00538 [Tripterygium wilfordii])

HSP 1 Score: 345.1 bits (884), Expect = 5.4e-91
Identity = 194/341 (56.89%), Postives = 217/341 (63.64%), Query Frame = 0


Query: 3   MSNGSGSGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVEMGRCCRNCFPIAMLRDLEV 62
           MS  S +G  RF++SPS+   I+KGDIT WF+DGSSDAI                    V
Sbjct: 10  MSKASFAG-TRFQLSPSSVLKIEKGDITLWFVDGSSDAI--------------------V 69

Query: 63  NPANEVMLGGGGADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITP---------- 122
           N  NE MLGGGGADGAIH AAGP+L +ACY V EV+PG+RCPTGEARITP          
Sbjct: 70  NSVNERMLGGGGADGAIHRAAGPELKEACYKVPEVRPGVRCPTGEARITPGFKLPVSHVI 129

Query: 123 -----------------------------------------------YPFDEAATIALST 182
                                                          YP++EAA++A+ST
Sbjct: 130 HTVGPIYDVDPNPKASLTSAYRNSLAVAKDNKIQYVAFPAISCGAYGYPYEEAASVAIST 189

Query: 183 VKEFSNGLKE-----------------------TFKRRNGGRNKHGRGHVKFIRCSNCGK 242
           +KEF+NG+KE                       TFKRRNGGRNKHGRGHVKFIRCSNCGK
Sbjct: 190 IKEFANGIKEVHFVLFFDEIYEVWLKKAKELLKTFKRRNGGRNKHGRGHVKFIRCSNCGK 249

Query: 243 CCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRS 261
           CCPKDKAIKRFLVRNIVEQAAVRD+QEA VY+QYTLPKLYAK+QYCVSCAIHSHVVRVRS
Sbjct: 250 CCPKDKAIKRFLVRNIVEQAAVRDIQEAGVYEQYTLPKLYAKVQYCVSCAIHSHVVRVRS 309

[Close]

BLAST of CmoCh04G011340 vs. NCBI nr
Match: CAF1870209.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 324.3 bits (830), Expect = 9.9e-85
Identity = 184/330 (55.76%), Postives = 200/330 (60.61%), Query Frame = 0


Query: 9   SGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVEMGRCCRNCFPIAMLRDLEVNPANEV 68
           SG V F +S S+   I KGDITKW +D SSDAI                    VNPANE 
Sbjct: 528 SGAV-FNLSDSSLLKIVKGDITKWSVDSSSDAI--------------------VNPANER 587

Query: 69  MLGGGGADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITP---------------- 128
           MLGGGGADGAIH AAGP L  ACY V EV+PG+RCP GEARITP                
Sbjct: 588 MLGGGGADGAIHRAAGPQLRAACYEVSEVRPGVRCPLGEARITPGFNLPASRVIHTVGPI 647

Query: 129 -----------------------------------------YPFDEAATIALSTVKEFSN 188
                                                    YPFDEAA + +ST+K+F+N
Sbjct: 648 YDSAVNPEESLTNSYRNSLRVAKENNIKYIAFPAISCGIYGYPFDEAAVVGISTIKDFAN 707

Query: 189 GL--------------------KETFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIK 248
                                 KETFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIK
Sbjct: 708 DFKEVHFVLFAEDIYSVWVNKAKETFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIK 767

Query: 249 RFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQP 262
           RF+VRNIVEQAA+RDVQEA VYD YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R P
Sbjct: 768 RFIVRNIVEQAAIRDVQEASVYDGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTP 827

[Close]

BLAST of CmoCh04G011340 vs. NCBI nr
Match: PPD72875.1 (hypothetical protein GOBAR_DD30220 [Gossypium barbadense])

HSP 1 Score: 318.5 bits (815), Expect = 5.4e-83
Identity = 169/273 (61.90%), Postives = 181/273 (66.30%), Query Frame = 0


Query: 14  FKVSPSTACVIQKGDITKWFIDGSSDAIVEMGRCCRNCFPIAMLRDLEVNPANEVMLGGG 73
           FK+S ++   I KGDITKWFIDGSSDAI                    VNPAN  MLGGG
Sbjct: 87  FKLSETSVLKINKGDITKWFIDGSSDAI--------------------VNPANPRMLGGG 146

Query: 74  GADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITP--------------------- 133
           GADGAIH AAGP+L +ACY V EVQPGIRCPTGEARITP                     
Sbjct: 147 GADGAIHRAAGPELKEACYKVPEVQPGIRCPTGEARITPGFKLPASHVIHTVGPIYDSDK 206

Query: 134 ------------------------------------YPFDEAATIALSTVKEFSNGLKET 193
                                               YP++EAAT+ALST+KEF+N +KET
Sbjct: 207 DPKGSLRNAYKNCLTVAKENNIKYIAFPSISCGVYGYPYEEAATVALSTIKEFANDIKET 266

Query: 194 FKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQY 230
           FKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDK+IKRFLVRNIVEQAAVRDVQEACVYD Y
Sbjct: 267 FKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKSIKRFLVRNIVEQAAVRDVQEACVYDTY 326

[Close]

BLAST of CmoCh04G011340 vs. NCBI nr
Match: CAG7908321.1 (unnamed protein product [Brassica rapa] >VDD15656.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 313.9 bits (803), Expect = 1.3e-81
Identity = 184/356 (51.69%), Postives = 199/356 (55.90%), Query Frame = 0


Query: 9   SGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVEMGRCCRNCFPIAMLRDLEVNPANEV 68
           SG V F +S S+   I KGDITKW +D SSDAI                    VNPANE 
Sbjct: 530 SGAV-FSLSDSSILKIVKGDITKWSVDASSDAI--------------------VNPANER 589

Query: 69  MLGGGGADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITP---------------- 128
           MLGGGGADGAIH AAGP L  ACY V E +PG+RCP GEARITP                
Sbjct: 590 MLGGGGADGAIHRAAGPQLRAACYEVSEARPGVRCPLGEARITPGFNLPASRVIHTVGPI 649

Query: 129 -----------------------------------------YPFDEAATIALSTVKEFSN 188
                                                    YPFDEAA + +ST+KEF+N
Sbjct: 650 YDSALNPKESLTNSYRNSLRVAKENNIKYIAFPAISCGIYGYPFDEAAVVGISTIKEFAN 709

Query: 189 GLKE----------------------------------------------TFKRRNGGRN 248
             KE                                              TFKRRNGGRN
Sbjct: 710 DFKEVHFVLFAEDIYSVWVNKAKERVNPSSSFSAHEEKRSQPRIIKDGIFTFKRRNGGRN 769

Query: 249 KHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKM 262
           KH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VYD YTLPKLYAK 
Sbjct: 770 KHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYDGYTLPKLYAKT 829

[Close]

BLAST of CmoCh04G011340 vs. NCBI nr
Match: PPS14985.1 (hypothetical protein GOBAR_AA05581 [Gossypium barbadense])

HSP 1 Score: 313.2 bits (801), Expect = 2.3e-81
Identity = 182/318 (57.23%), Postives = 193/318 (60.69%), Query Frame = 0


Query: 14  FKVSPSTACVIQKGDITKWFIDGSSDAIVEMGRCCRNCFPIAMLRDLEVNPANEVMLGGG 73
           FK+S ++   I KGDITKWFIDGSSDAI                    VNPAN  MLGGG
Sbjct: 13  FKLSETSVLKINKGDITKWFIDGSSDAI--------------------VNPANPRMLGGG 72

Query: 74  GADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITP--------------------- 133
           GADGAIH AAGP+L +ACY V EVQPGIRCPTGEARITP                     
Sbjct: 73  GADGAIHRAAGPELKEACYKVPEVQPGIRCPTGEARITPMVEINGQEDLIGLHAHVIHTV 132

Query: 134 ----YPFDEAATIA---------------LSTV-------KEFSNGLKETFKR------- 193
               Y  D+ A  A               + TV       K+    L+  +K        
Sbjct: 133 GAAIYDSDKRALKAQLRMHTGFKLPASHVIHTVGPIYDSDKDPKGSLRNAYKNCLTVAKE 192

Query: 194 ----------------RNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAA 253
                            NGGRNKHGRGHVKFIRCSNCGKCCPKDK+IKRFLVRNIVEQAA
Sbjct: 193 NNIKYIAFPSISCGVYGNGGRNKHGRGHVKFIRCSNCGKCCPKDKSIKRFLVRNIVEQAA 252

Query: 254 VRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQP 262
           VRDVQEACVYD YTLPKLY KMQYCVSCAIHSHVVRVRSRTDRR R PP RFIRRRDD P
Sbjct: 253 VRDVQEACVYDTYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPARFIRRRDDMP 309

[Close]

BLAST of CmoCh04G011340 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 215.7 bits (548), Expect = 4.6e-56
Identity = 106/126 (84.13%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 136 TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 195
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 196 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPA 255
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPRPA
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRPA 121

Query: 256 GAGIPA 262
           G G  A
Sbjct: 122 GPGAAA 127

[Close]

BLAST of CmoCh04G011340 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 215.7 bits (548), Expect = 4.6e-56
Identity = 106/126 (84.13%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 136 TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 195
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 196 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPA 255
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPRPA
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRPA 121

Query: 256 GAGIPA 262
           G G  A
Sbjct: 122 GPGAAA 127

[Close]

BLAST of CmoCh04G011340 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-55
Identity = 107/126 (84.92%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 136 TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 195
           TFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 196 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPA 255
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPRPA
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRPA 121

Query: 256 GAGIPA 262
           G G PA
Sbjct: 122 G-GAPA 126

[Close]

BLAST of CmoCh04G011340 vs. TAIR 10
Match: AT2G40600.1 (appr-1-p processing enzyme family protein )

HSP 1 Score: 119.8 bits (299), Expect = 3.4e-27
Identity = 77/192 (40.10%), Postives = 87/192 (45.31%), Query Frame = 0


Query: 1   MAMSNGSGSGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVEMGRCCRNCFPIAMLRDL 60
           ++ S  SG     F +S S+   I KGDITKW +D SSDAI                   
Sbjct: 61  VSSSMASGDEGAVFNLSDSSLLKILKGDITKWSVDSSSDAI------------------- 120

Query: 61  EVNPANEVMLGGGGADGAIHNAAGPDLVQACYSVQEVQPGIRCPTGEARITP-------- 120
            VNPANE MLGGGGADGAIH AAGP L  ACY V EV+PG+RCPTGEARITP        
Sbjct: 121 -VNPANERMLGGGGADGAIHRAAGPQLRAACYEVPEVRPGVRCPTGEARITPGFNLPASR 180

Query: 121 -------------------------------------------------YPFDEAATIAL 136
                                                            YPFDEAA I +
Sbjct: 181 VIHTVGPIYDSDVNPQESLTNSYKNSLRVAKENNIKYIAFPAISCGIYGYPFDEAAAIGI 232

The following BLAST results are available for this feature:

BLAST of CmoCh04G011340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49206	6.5e-55	84.13	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	6.5e-55	84.13	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
Q9LYK9	1.9e-54	84.92	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49216	2.4e-49	73.68	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	8.0e-37	67.23	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of CmoCh04G011340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7E269	2.6e-91	56.89	Macro domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW0...	[more]
M4DKF2	6.0e-88	59.03	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1	[more]
A0A0D3C5G6	6.5e-82	52.60	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1	[more]
A0A3P6CJE6	6.5e-82	51.69	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA04T18560Z PE=3 SV=...	[more]
A0A3P6CZH7	1.1e-81	52.30	Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC4T28343H PE=3 SV=1	[more]

BLAST of CmoCh04G011340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5752623.1	5.4e-91	56.89	hypothetical protein HS088_TW01G00538 [Tripterygium wilfordii]	[more]
CAF1870209.1	9.9e-85	55.76	unnamed protein product [Brassica napus]	[more]
PPD72875.1	5.4e-83	61.90	hypothetical protein GOBAR_DD30220 [Gossypium barbadense]	[more]
CAG7908321.1	1.3e-81	51.69	unnamed protein product [Brassica rapa] >VDD15656.1 unnamed protein product [Bra...	[more]
PPS14985.1	2.3e-81	57.23	hypothetical protein GOBAR_AA05581 [Gossypium barbadense]	[more]

BLAST of CmoCh04G011340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40510.1	4.6e-56	84.13	Ribosomal protein S26e family protein	[more]
AT2G40590.1	4.6e-56	84.13	Ribosomal protein S26e family protein	[more]
AT3G56340.1	1.3e-55	84.92	Ribosomal protein S26e family protein	[more]
AT2G40600.1	3.4e-27	40.10	appr-1-p processing enzyme family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002589	Macro domain	PFAM	PF01661	Macro	coord: 62..112 e-value: 3.6E-10 score: 39.9
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 135..248 e-value: 1.0E-56 score: 192.3
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 136..240 e-value: 4.9E-53 score: 178.1
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 136..258
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 207..214
IPR043472	Macro domain-like	GENE3D	3.40.220.10	Leucine Aminopeptidase, subunit E, domain 1	coord: 9..112 e-value: 2.4E-14 score: 55.2
IPR043472	Macro domain-like	SUPERFAMILY	52949	Macro domain-like	coord: 62..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..260
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 136..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G011340.1	CmoCh04G011340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004784	superoxide dismutase activity