CmoCh04G010310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G010310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	reactive Intermediate Deaminase A, chloroplastic
Location	Cmo_Chr04: 5159300 .. 5163562 (-)
RNA-Seq Expression	CmoCh04G010310
Synteny	CmoCh04G010310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTTTATTAATTTAGCCTATTTAATTCAACAGACATAATAGTGACAAAACCAATGGACTAAAATGACTAATTTTGAACCAATTTAAAAGGGATGAGAACTAATTTTTAATATTTTACTTTGCATTATGTTTATACCATTTATTTATGTTGGATTGTTAAATGATGTATTTGTTTGTACTCACATTTTGCATTAAGTAGTGAGTTAATTAAATTTTAAATTAATTTCTTAATATAGATTAAGCTTCGTGTATATCATAATATAATTCAAATATTTTGAGTATGGTAAAAAAATTATTTCCGTATTTTTAAACTTTATCCAATATATTTGATAATTCTAGATTTTGCTTGGAATAAACTTTTTAAGTAATTCTAATTTTTATTATTCTATTTGGATATCTTTTACCTTATATGCTCTTTTTTTGGTTATACTTTAGAAGGGTAATTCAAAGATGCGACTATTTTTATTCGTTTTATTTAAAAGTGAAATTAAATAAAATTAACCACTGAATATTAAAACAATATATCTAAGATACTTACCGTGGTAAAAACATTTATTTAATTTTTTACGTGTAAGGCTGTCTAACTTATTAAAGAAAATAGAGAAAGAATAAATAATAATAATAATAATAATTTAATTAATTTGACATTTAAATATTTTAAAATAGAGAAATATAAATTAAATCGTTGATACACTTGAGAAATTTAATTAATATAACTATAAAGTTTTTATAGACATGAAATAATGCTTATTGTCTCTGTCGCTGCGAGAAGCCCACTAAACTGCATAATTATGATTCGCACACTACTGCATTGGCTTTACTCGATATAATTCGCCCGTGGGTTTCAGTCGTTCAACTAATTGGCACGCAATAACCTGCTCGAACAGTCTATCAACAGTCAATTGGTATAGGGTCAAACGGAATACAACAGAGGGTGCAAATTGATACACTTATATATTATAAAAAGTCCAATGCTCGAATTGATACAATTTAAGCTTAGGGTATATGTCGATTTTTTTGCCTCGTCCAAAATATTGGATTGTACTCCAAACCGAAAAAAAAAAAAAAAAAAATTTGTCCCATAATTTATTTATACATTTTTTATTTTTTATATTTACAATTTTATTGTTTTACTTAAACAACAATATTTAAATACACTAAACTTTTATTCAATTTTTTTTCTTAAAATAATTTAAAAATATTTATAAAAATTGAAATGGGGGCAGAAATTGTAGATGCTAAAATTGGATGCTTTGGCATTAGGTATTTATTTATTACGTACTGAAAAGGAGACGTTTTTTTGTGCATTGCAAAGGCGTTTAATTCTCTAATCGTTATCGCCGAACAGTATCTGAGGTGCTCAGTGCGAAGAGTGAGGAGGAAAGCAGATCGGACAGAGATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTGTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCAGCATTTCTACCGATGCTAGTACGCCCTCGTTTTTCTGCTTATTTCCGATCGATTCCTCTTTTTTCGTCGATCAATTTTCGCTATGGATTAGTGATTGCGGTTTTGTGTTGTACTTGACTCTTGTTTTGTCGAAACCTCGATGGATTTTGTAGGGTTTAGTTTGTGTTTCAGCTCAGTAGCTATTAGAACTTTGAAATCTGAGCGTTCTTTGCGATTAGGTATAAGCTTGGTGATTATTCTATTCACAGCGTTAACTTAGATTGGAGGATCTTTTTGGTATCCCCGCTTATGTAGAAGGGTCTCCTTGTCCCTTGGTCCGCTAGGCTGTTTTGGTCGCTTAGGCGTATTTATTCAATGAACGTGTTGAATTCTTTCCTATACATATACATATAAAGTAATGCGGAAGATAATTCTTTGGAGGCTTTCTTTTTCATAGCTGTAGATGAAAATTCTAACTTTCGGGAAGAATCAAATAATTTTTCTTTTCTAATTTTCTTTTTTATGAATGCTTATAACAGATGCATAACCACCCCTTACTAATTATTTCTTGTGTGGCAGGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGGTAGCTTCATCACTTTATTATTGTTATTTTCTATTTGATAGTGTTTATGATTTGATTAAAGGAATGTTTGGGAGTGGTTTCTCTTATATCATGCCGTTTTGAGTGGTACAAGATGATTTTGGCTATTCCAAAATCACTCCAATTCATTCCCTAAGTGGGTTTTTGGATGCCGACTTGGGCATAGCTTGGAAGGTTGAATATTTTAAAATATTGGTATGAAAAAAAAAGAAAAAAAAAAAAATACAGAAGGATGGAGTGGGTTTCAGTGTGTGCGCATGTTCGTATTATTGTGCTGCCTAATAGGGTGTTTATCTTCATGTTCCAATACAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTAATGTTCATTTAGTAGGGTAGTTGATCGTATCATGTCCATGTAAATTAAACTTTTGAGCTGGATATAAAAAATTATAAGTCAATGGAATTTGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCGGCTATTCTTCCGTGGTCAAGACAACTATTATGTACGAACTTTTGGCCTCTTTTCTTTCTGATCATAATATCTTCTCTCTTTAATTTAAATAAGATCTGAATAACTAAGGAGTTGATGGTAATTGTTTTAAAACATGGTTTTCTGCTTTTGTATACTTTTAAGAACAATTTTTTGAGTGACTTATTAAAGTTAAGATAATTGTCCACAACAAACACTATTTACTAGTTATTCTGCTTGGTTCTATTTTCCATTTTTATGTTTATTCTATTTATCTAACCTTATGCTTTAACCCCGTACACTTTGTACTAAAAATCATTTGTCTGTTTCATTAGTTTTGCATAATTCATTTCAGAAACTTGACAAAGTATACCTTTTGCTAATTTACTTGATGAGTAGATTCACGAAAGTATTTAAAGCTAGATCAAGATGTAAGTCATTCTTTGAGTTCAAAAATTGATAAGGCTTTCGTTAAATAAATTGTTATAATTAAATTTATAACAATTTAATCCTACCATGAAAAATCTCATAAAAACTAAGTGCCAGTTTTTATATGTAATGATTTAGACTTTCTAACTTATAAACACATTTGGTCTCTTTTTAGTTTTTTAATTTATATATGTAAGAAATTCCATTCCATCCTTATAGTATTTTCCACAGTAAGAGACTAAATGGTCTCTTGAAAAACTTGACTAAACTATTCTAAGTTTTCAAGTATAGGGACTAATGGTTACATATATAAGTTGAGAGATTGAATTGTTTGAAACTAAACTGTTACAAACTAAAACATAGAGACTAAATTGTTACTTTTATTGAAGTTCAAGGACCAAAAGTGTTTTTAACATCCACTTAGTAATCTTTCTAGTATTGAAAAGTGTCTTTCAGAACATTCTCATGTTTTTCCTGTGATTCAGTTCTTTCTTCGCAAATCTTTCCTGCAGGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAATGAGATTTATGGTAAATGTAAGTTTCGTTAAACTGAACCTTTAACCTCTGTCTTATCTAATACCGAGCATTTAATTTAGATATGCCTTTATGATCACTCTCTGTCCCCATTACGGTTCAACTTTAGTTTCTAGAATATAGTTATTTAAGTGAGTTCGAAAAATTACAACTTGGATTAATTTTGTATATTATTCTACTTGGTGAAAATGATAAACTTTTCTTTTTCGTGTTCTATCTGGCTGTGTACTACTTGGTGGTCTGGTTATTTTGGGTCCATGTTTCATTTACTGAAGGATAATTTATGTCCTGGTGAAGTTGTGATTCTATCTACGCTGCTTTGATATATTCTCTTGAGATAAGGTTGCATTCTTCATTTTTACAGATTCAAAGCTCAAGTTGAGAGTGTTTTCACATTGTTTTGTTTGCCACTTTTTATGCAGACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCGTTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATCGCTACACTTTGA

mRNA sequence

ATGGCGTTTAATTCTCTAATCGTTATCGCCGAACAGTATCTGAGGTGCTCAGTGCGAAGAGTGAGGAGGAAAGCAGATCGGACAGAGATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTGTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCAGCATTTCTACCGATGCTAGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCGGCTATTCTTCCGTGGTCAAGACAACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAATGAGATTTATGGTAAATACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCGTTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATCGCTACACTTTGA

Coding sequence (CDS)

ATGGCGTTTAATTCTCTAATCGTTATCGCCGAACAGTATCTGAGGTGCTCAGTGCGAAGAGTGAGGAGGAAAGCAGATCGGACAGAGATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTGTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCAGCATTTCTACCGATGCTAGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCGGCTATTCTTCCGTGGTCAAGACAACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAATGAGATTTATGGTAAATACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCGTTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATCGCTACACTTTGA

Protein sequence

MAFNSLIVIAEQYLRCSVRRVRRKADRTEMAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIECIATL

Homology

[Close]

BLAST of CmoCh04G010310 vs. ExPASy Swiss-Prot
Match: Q94JQ4 (Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RIDA PE=1 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 5.0e-66
Identity = 139/190 (73.16%), Postives = 157/190 (82.63%), Query Frame = 0


Query: 30  MAWCAARALHMPALDI-TALRS-KTPL-AVGVGCASVAGTTLCRSSSTSKRQIPFASLSI 89
           M W   R+++ P LD+ TALRS +TPL A GVGCA+ AG +L R SS   R  PFASLS+
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSS---RSPPFASLSV 60

Query: 90  STDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 149
           S  +  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ +E QTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 150 KNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 209
           KNMGEILKA GA YSSVVKTTIMLADL DFK VNEIY KYFP+P+PARSTYQVAALPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 210 KVEIECIATL 217
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. ExPASy Swiss-Prot
Match: P52758 (2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens OX=9606 GN=RIDA PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.7e-32
Identity = 63/123 (51.22%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 92  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 151
           I+  + T KAP A+GPYSQA+  +  +++SG +G++P +G+ VS  +  + +Q LKNMGE
Sbjct: 5   IRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGE 64

Query: 152 ILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIE 211
           ILKA G  +++VVKTT++LAD+ DF  VNEIY +YF S  PAR+ YQVAALP  +++EIE
Sbjct: 65  ILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIE 124

Query: 212 CIA 215
            +A
Sbjct: 125 AVA 127

[Close]

BLAST of CmoCh04G010310 vs. ExPASy Swiss-Prot
Match: Q10121 (RutC family protein C23G10.2 OS=Caenorhabditis elegans OX=6239 GN=C23G10.2 PE=3 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 6.1e-32
Identity = 66/122 (54.10%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 93  KEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGEI 152
           ++ + +  AP A+GPYSQA++A N +++SG LGL+P+TG      +E QT Q LKN+GE+
Sbjct: 41  RQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVE-QTHQSLKNLGEV 100

Query: 153 LKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIEC 212
           LKA GA Y +VVKTT++L ++ DF  VNE+YG+YF SP PAR+ YQVAALP    VEIE 
Sbjct: 101 LKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEA 160

Query: 213 IA 215
           +A
Sbjct: 161 VA 161

[Close]

BLAST of CmoCh04G010310 vs. ExPASy Swiss-Prot
Match: P52760 (2-iminobutanoate/2-iminopropanoate deaminase OS=Mus musculus OX=10090 GN=Rida PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-31
Identity = 64/123 (52.03%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 92  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 151
           I++ + T KAPAA+GPYSQA++ +  +++SG +GL+P +G+ V   +  + +Q LKN+GE
Sbjct: 5   IRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKNLGE 64

Query: 152 ILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIE 211
           ILKA G  +++VVKTT++LAD+ DF  VNEIY  YF    PAR+ YQVAALP  ++VEIE
Sbjct: 65  ILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSRVEIE 124

Query: 212 CIA 215
            IA
Sbjct: 125 AIA 127

[Close]

BLAST of CmoCh04G010310 vs. ExPASy Swiss-Prot
Match: Q9ZKQ6 (RutC family protein jhp_0879 OS=Helicobacter pylori (strain J99 / ATCC 700824) OX=85963 GN=jhp_0879 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.9e-31
Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 92  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 151
           +KE + +  AP A+GPYSQAI  N+L+FVSG LG++  TG+F   DI  QT Q ++N+  
Sbjct: 1   MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKA 60

Query: 152 ILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIE 211
           ILK  G G  SVVKTTI+L  L DF  VN IYG YF  P PAR+T+QVA LP DA VEIE
Sbjct: 61  ILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFKEPYPARATFQVAKLPKDALVEIE 120

Query: 212 CIA 215
            IA
Sbjct: 121 AIA 123

[Close]

BLAST of CmoCh04G010310 vs. ExPASy TrEMBL
Match: A0A6J1FUT7 (reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447476 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.3e-96
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
           ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM
Sbjct: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 210 IECIATL 217
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. ExPASy TrEMBL
Match: A0A6J1IN69 (reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476753 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.6e-94
Identity = 183/187 (97.86%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTT CRSSSTSKRQIPFASL ISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTD 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
            SIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM
Sbjct: 61  TSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 210 IECIATL 217
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. ExPASy TrEMBL
Match: A0A1S3CJ54 (reactive Intermediate Deaminase A, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103501583 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.7e-88
Identity = 172/187 (91.98%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCA R+ HMPA D+TALRSKTPLAVGVGC SVAGTTL RSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCATRSFHMPAFDVTALRSKTPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSD++E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDNVEDQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 210 IECIATL 217
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. ExPASy TrEMBL
Match: A0A0A0L2Z6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077580 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.2e-86
Identity = 169/187 (90.37%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCAAR  HMPA D+TALRSK+PLAVGVGC SVAGTTL RSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDD+E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGG+ YSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTY+VA LPLDAKVE
Sbjct: 121 GEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180

Query: 210 IECIATL 217
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. ExPASy TrEMBL
Match: A0A6P4APP4 (reactive Intermediate Deaminase A, chloroplastic OS=Ziziphus jujuba OX=326968 GN=LOC107431842 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.5e-78
Identity = 155/187 (82.89%), Postives = 169/187 (90.37%), Query Frame = 0


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCAAR  ++PA+D+ ALR++ PLAVGVG ASVAG+ + RSSS+ KR  PFA L ISTD
Sbjct: 1   MAWCAARTFNVPAIDVGALRTRAPLAVGVGFASVAGSNIWRSSSSMKRSAPFACLGISTD 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
             IKEAVKTDKAPAALGPYSQAIKANN L+VSGVLGL PETGKFVSD++E QTEQVLKNM
Sbjct: 61  TRIKEAVKTDKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFVSDNVEDQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTYQVAALPLDAK+E
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKIE 180

Query: 210 IECIATL 217
           IECIA+L
Sbjct: 181 IECIASL 187

[Close]

BLAST of CmoCh04G010310 vs. NCBI nr
Match: XP_022942433.1 (reactive Intermediate Deaminase A, chloroplastic [Cucurbita moschata] >XP_023545861.1 reactive Intermediate Deaminase A, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6600781.1 Reactive Intermediate Deaminase A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 360.1 bits (923), Expect = 1.3e-95
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
           ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM
Sbjct: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 210 IECIATL 217
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. NCBI nr
Match: XP_022976324.1 (reactive Intermediate Deaminase A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 353.2 bits (905), Expect = 1.6e-93
Identity = 183/187 (97.86%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTT CRSSSTSKRQIPFASL ISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTD 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
            SIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM
Sbjct: 61  TSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 210 IECIATL 217
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. NCBI nr
Match: KAG7031418.1 (Reactive Intermediate Deaminase A, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 348.2 bits (892), Expect = 5.1e-92
Identity = 184/187 (98.40%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
           ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM
Sbjct: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIY   FPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKVE 180

Query: 210 IECIATL 217
           IECIATL
Sbjct: 181 IECIATL 185

[Close]

BLAST of CmoCh04G010310 vs. NCBI nr
Match: XP_038903207.1 (reactive Intermediate Deaminase A, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 336.7 bits (862), Expect = 1.5e-88
Identity = 173/187 (92.51%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCAAR  HMPA D+TALRSKTPLAVGVGCASVAGTTL RSSSTSKRQ+PFASL ISTD
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQMPFASLGISTD 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
            SIKEAV+TDKAPAALGPYSQAIKANNLLFVSG LGLNPETGKFVSDD+E QTEQVLKNM
Sbjct: 61  TSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIYGKYFPSP+PARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPSPARSTYQVAALPLDAKVE 180

Query: 210 IECIATL 217
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. NCBI nr
Match: XP_008463412.1 (PREDICTED: reactive Intermediate Deaminase A, chloroplastic-like [Cucumis melo])

HSP 1 Score: 334.3 bits (856), Expect = 7.6e-88
Identity = 172/187 (91.98%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCA R+ HMPA D+TALRSKTPLAVGVGC SVAGTTL RSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCATRSFHMPAFDVTALRSKTPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSD++E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDNVEDQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 210 IECIATL 217
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. TAIR 10
Match: AT3G20390.1 (endoribonuclease L-PSP family protein )

HSP 1 Score: 252.3 bits (643), Expect = 3.5e-67
Identity = 139/190 (73.16%), Postives = 157/190 (82.63%), Query Frame = 0


Query: 30  MAWCAARALHMPALDI-TALRS-KTPL-AVGVGCASVAGTTLCRSSSTSKRQIPFASLSI 89
           M W   R+++ P LD+ TALRS +TPL A GVGCA+ AG +L R SS   R  PFASLS+
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSS---RSPPFASLSV 60

Query: 90  STDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 149
           S  +  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ +E QTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 150 KNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 209
           KNMGEILKA GA YSSVVKTTIMLADL DFK VNEIY KYFP+P+PARSTYQVAALPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 210 KVEIECIATL 217
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. TAIR 10
Match: AT3G04480.1 (endoribonucleases )

HSP 1 Score: 41.6 bits (96), Expect = 9.5e-04
Identity = 26/100 (26.00%), Postives = 50/100 (50.00%), Query Frame = 0


Query: 101 APAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGEILKAGGAGY 160
           AP+ +GPYSQA    ++L ++G LGL+P T    ++    +  Q L N   I ++     
Sbjct: 424 APSCIGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSI 483

Query: 161 SSVVKTTIMLADLKDFK-KVNEIYGKYFPSPAPARSTYQV 200
           SS     ++    +  + + N+++ K+      A+S+ +V
Sbjct: 484 SSSAILFVVFCSARTKQSERNQLHEKFVTFLGLAKSSRRV 523

The following BLAST results are available for this feature:

BLAST of CmoCh04G010310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JQ4	5.0e-66	73.16	Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P52758	4.7e-32	51.22	2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens OX=9606 GN=RIDA PE=...	[more]
Q10121	6.1e-32	54.10	RutC family protein C23G10.2 OS=Caenorhabditis elegans OX=6239 GN=C23G10.2 PE=3 ...	[more]
P52760	1.0e-31	52.03	2-iminobutanoate/2-iminopropanoate deaminase OS=Mus musculus OX=10090 GN=Rida PE...	[more]
Q9ZKQ6	8.9e-31	56.91	RutC family protein jhp_0879 OS=Helicobacter pylori (strain J99 / ATCC 700824) O...	[more]

BLAST of CmoCh04G010310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUT7	6.3e-96	100.00	reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IN69	7.6e-94	97.86	reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A1S3CJ54	3.7e-88	91.98	reactive Intermediate Deaminase A, chloroplastic-like OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0L2Z6	1.2e-86	90.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077580 PE=3 SV=1	[more]
A0A6P4APP4	1.5e-78	82.89	reactive Intermediate Deaminase A, chloroplastic OS=Ziziphus jujuba OX=326968 GN...	[more]

BLAST of CmoCh04G010310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942433.1	1.3e-95	100.00	reactive Intermediate Deaminase A, chloroplastic [Cucurbita moschata] >XP_023545...	[more]
XP_022976324.1	1.6e-93	97.86	reactive Intermediate Deaminase A, chloroplastic [Cucurbita maxima]	[more]
KAG7031418.1	5.1e-92	98.40	Reactive Intermediate Deaminase A, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_038903207.1	1.5e-88	92.51	reactive Intermediate Deaminase A, chloroplastic-like [Benincasa hispida]	[more]
XP_008463412.1	7.6e-88	91.98	PREDICTED: reactive Intermediate Deaminase A, chloroplastic-like [Cucumis melo]	[more]

BLAST of CmoCh04G010310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20390.1	3.5e-67	73.16	endoribonuclease L-PSP family protein	[more]
AT3G04480.1	9.5e-04	26.00	endoribonucleases	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006175	YjgF/YER057c/UK114 family	PFAM	PF01042	Ribonuc_L-PSP	coord: 99..215 e-value: 8.5E-42 score: 142.0
IPR006175	YjgF/YER057c/UK114 family	PANTHER	PTHR11803	2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA	coord: 18..216
IPR035959	RutC-like superfamily	GENE3D	3.30.1330.40		coord: 88..215 e-value: 5.1E-49 score: 167.6
IPR035959	RutC-like superfamily	SUPERFAMILY	55298	YjgF-like	coord: 94..216
IPR006056	RidA family	TIGRFAM	TIGR00004	TIGR00004	coord: 93..215 e-value: 1.8E-50 score: 168.3
None	No IPR available	PANTHER	PTHR11803:SF51	BNAA05G36080D PROTEIN	coord: 18..216
None	No IPR available	CDD	cd00448	YjgF_YER057c_UK114_family	coord: 108..214 e-value: 1.96482E-44 score: 142.312
IPR019897	RidA, conserved site	PROSITE	PS01094	UPF0076	coord: 192..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G010310.1	CmoCh04G010310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901565	organonitrogen compound catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0019239	deaminase activity