CmoCh04G009700 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G009700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Metallothionein-like protein type 3
Location	Cmo_Chr04: 4933342 .. 4934564 (-)
RNA-Seq Expression	CmoCh04G009700
Synteny	CmoCh04G009700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAGATCATAAGCCAAAAAAAGTTCCATAAGCTATCAGTTTTTCGTTCTCCTACAACTTCTCTAGCTTCTACACCATGTCAGGCAAGTGCGGCAACTGCGACTGCTCCGACAGCAGCAACTGCGTGTAAGTATTTTTTTTGTTTTCCTACGAACTTCGCAGCAAATCTCATCAAGAGCTTGCTTGTCTCAAAGCTATGATTCTGTTGCCCTCTCAGAAATTGTCTTAATATAGCAAGTCTGTCAATATGGTCCTTGGTTGCCCTCCCAATTATGACAGTTTGTTTGATGCTATAAAGGGAAGCAGAAGGGGCAATAAACTCTATTGGGGTGAAACTAAGAGTTCGAATCCAAATTATAGTGTCGCTGCAAATAAGATAATTATAAAACCACTTTTTCTTTCTTTTCCTTCACAGTATGACCAAATCAAAACTAAAAAATTACTAGTAAAAAAAAGGATTGAAAAGTTTGCATATTCGAATTCATTTCTATGTTAATGACGTGCTCTATAATGACAGGAAAAAAGGGAACAGCTATGGCGCTGTCATCATGGAGAATGAGAAGAGGTAATTTTTTCAGCTCATCGGGCATATACCTTCTTCAAAACAGATTATTTAGAGCCCATTTTTTTCATGAAAAACTCAAATTCAAAGGGTGTAAACAAAAGTATGTTTAGATTTAGAAAAAAAAGAGTGGAGCAGAGACAAAAGAAATCTCAACAAGTTATTAACTAAAAGTGCTTGATAGTACCTGGCATCTAACAATGAATCTCTTGGTTCTGCAGCTACTTTGACGCCATAGACATGGACGTCCCAGCGGCCGAGCACAATGACAAGTGCAGCTGCAACCCCTGCAGTTGCAAGGACTGCCACTGCGGCAAATGAACACATACACCTGTTGTTTCCATTAACACAGTTATATAAAGCCAGGAATAATGTAGCTGTGTTTGAAATGTGTCCTATTATGTTCAAAACCTCTGTGCTTAGCTAGAGGTGTGTTACGAATAATATCTACTTCTGTTCTTCATCCATAGTCATGTAATGCTGGTCACTTCTGTGGCCATGGGTTAACTATTAATGGATAAGTTATATACTAGTACACTCTCCCTCTCCTTCCATTTTTATTGTGGTTCTTTTCATCCTTGATTCAATTTGACTACAAATTACAAAGAGGAAACAATCTAGAAGTGCTTCAATACTTCTAAGAGTAGTGTAATACAACAAA

mRNA sequence

TAGAGATCATAAGCCAAAAAAAGTTCCATAAGCTATCAGTTTTTCGTTCTCCTACAACTTCTCTAGCTTCTACACCATGTCAGGCAAGTGCGGCAACTGCGACTGCTCCGACAGCAGCAACTGCGTGAAAAAAGGGAACAGCTATGGCGCTGTCATCATGGAGAATGAGAAGAGCTACTTTGACGCCATAGACATGGACGTCCCAGCGGCCGAGCACAATGACAAGTGCAGCTGCAACCCCTGCAGTTGCAAGGACTGCCACTGCGGCAAATGAACACATACACCTGTTGTTTCCATTAACACAGTTATATAAAGCCAGGAATAATGTAGCTGTGTTTGAAATGTGTCCTATTATGTTCAAAACCTCTGTGCTTAGCTAGAGGTGTGTTACGAATAATATCTACTTCTGTTCTTCATCCATAGTCATGTAATGCTGGTCACTTCTGTGGCCATGGGTTAACTATTAATGGATAAGTTATATACTAGTACACTCTCCCTCTCCTTCCATTTTTATTGTGGTTCTTTTCATCCTTGATTCAATTTGACTACAAATTACAAAGAGGAAACAATCTAGAAGTGCTTCAATACTTCTAAGAGTAGTGTAATACAACAAA

Coding sequence (CDS)

ATGTCAGGCAAGTGCGGCAACTGCGACTGCTCCGACAGCAGCAACTGCGTGAAAAAAGGGAACAGCTATGGCGCTGTCATCATGGAGAATGAGAAGAGCTACTTTGACGCCATAGACATGGACGTCCCAGCGGCCGAGCACAATGACAAGTGCAGCTGCAACCCCTGCAGTTGCAAGGACTGCCACTGCGGCAAATGA

Protein sequence

MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHCGK

Homology

[Close]

BLAST of CmoCh04G009700 vs. ExPASy Swiss-Prot
Match: O24059 (Metallothionein-like protein type 3 OS=Malus domestica OX=3750 GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.2e-16
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MSGKC NCDC+DS+ CVKKGNSY  VI+E E    D + +D PAAEH+ KC C   CSC 
Sbjct: 1  MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFVDAPAAEHDGKCKCGTGCSCV 60

Query: 61 DCHCG 65
           C CG
Sbjct: 61 SCTCG 65

[Close]

BLAST of CmoCh04G009700 vs. ExPASy Swiss-Prot
Match: A2WLS0 (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica OX=39946 GN=MT3A PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC-NPCSCK 60
          MS KCGNCDC+D S CVKKG SYG VI+E EKS+F+    +V A E N  C C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE----EVAAGEENGGCKCGTSCSCT 60

Query: 61 DCHCGK 66
          DC CGK
Sbjct: 61 DCKCGK 62

[Close]

BLAST of CmoCh04G009700 vs. ExPASy Swiss-Prot
Match: A1YTM8 (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica OX=39947 GN=MT3A PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC-NPCSCK 60
          MS KCGNCDC+D S CVKKG SYG VI+E EKS+F+    +V A E N  C C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE----EVAAGEENGGCKCGTSCSCT 60

Query: 61 DCHCGK 66
          DC CGK
Sbjct: 61 DCKCGK 62

[Close]

BLAST of CmoCh04G009700 vs. ExPASy Swiss-Prot
Match: Q40256 (Metallothionein-like protein type 3 OS=Musa acuminata OX=4641 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCN-PCSCKDCHC 64
          CGNCDC D S CVKKGNSYG  I+E EKSY D + +   AAEH+ KC C   C+C DC C
Sbjct: 4  CGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVAAEAAEHDGKCKCGAACACTDCKC 63

[Close]

BLAST of CmoCh04G009700 vs. ExPASy Swiss-Prot
Match: O48951 (Metallothionein-like protein 1 OS=Prunus avium OX=42229 GN=MT1 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-13
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MS KC NCDCSDSS C KKG S+  VI+E E    D + MD PAAE+   C C P C+C 
Sbjct: 1  MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVIMDAPAAENGGNCKCGPSCACV 60

Query: 61 DCHC 64
          DC C
Sbjct: 61 DCKC 64

[Close]

BLAST of CmoCh04G009700 vs. ExPASy TrEMBL
Match: E5GBS4 (Metallothionein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.9e-20
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHC 64
          CGNCDCSD + CVKKGNSYGAVIMENE S FDAI M+ PAAEHNDKCSCNPCSC +C C
Sbjct: 4  CGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNCGC 62

[Close]

BLAST of CmoCh04G009700 vs. ExPASy TrEMBL
Match: D2J0B0 (Metallothionein-like protein type 3 OS=Cucumis sativus OX=3659 GN=MTP-3 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHC 64
          CGNCDCSD + CVK+G+SYGAVI ENE S FDAI MD PAAEHNDKCSCNPCSC DC C
Sbjct: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDCGC 62

[Close]

BLAST of CmoCh04G009700 vs. ExPASy TrEMBL
Match: A0A2P5D400 (Metallothionein-like protein type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_098150 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.3e-16
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC-NPCSCK 60
          MS KCG+CDC+D S CVKKG+SY  VI+E EKSY DA+ MD PAAEHN KC C   CSC 
Sbjct: 1  MSDKCGSCDCADKSQCVKKGSSYSLVIVETEKSYMDAVVMDAPAAEHNGKCKCGTSCSCV 60

Query: 61 DCHCG 65
          +C CG
Sbjct: 61 NCTCG 65

[Close]

BLAST of CmoCh04G009700 vs. ExPASy TrEMBL
Match: A0A2P5F066 (Metallothionein-like protein type OS=Trema orientale OX=63057 GN=TorRG33x02_129810 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.8e-15
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC-NPCSCK 60
          MS KCG+C+C+D S CVKKG+SY  VI+E EKSY DA+ MD PAAEHN KC C   CSC 
Sbjct: 1  MSDKCGSCNCADKSQCVKKGSSYSLVIVETEKSYMDAVVMDAPAAEHNGKCKCGTSCSCV 60

Query: 61 DCHCG 65
          +C CG
Sbjct: 61 NCTCG 65

[Close]

BLAST of CmoCh04G009700 vs. ExPASy TrEMBL
Match: A0A2N9F6R2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10356 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.6e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCN-PCSCK 60
          MS KCGNCDC+D S CVKKG+SYG VI+E +KSY + + MD PAAEH  KC C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGSSYGLVIVETDKSYTNTVVMDAPAAEHEGKCKCGASCSCT 60

Query: 61 DCHCGK 66
          +C CG+
Sbjct: 61 NCTCGQ 66

[Close]

BLAST of CmoCh04G009700 vs. NCBI nr
Match: KAG7031367.1 (Metallothionein-like protein type 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-31
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKD 60
          MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKD
Sbjct: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKD 60

Query: 61 CHCGK 66
          CHCGK
Sbjct: 61 CHCGK 65

[Close]

BLAST of CmoCh04G009700 vs. NCBI nr
Match: ADN33916.1 (metallothionein-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 107.1 bits (266), Expect = 5.9e-20
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHC 64
          CGNCDCSD + CVKKGNSYGAVIMENE S FDAI M+ PAAEHNDKCSCNPCSC +C C
Sbjct: 4  CGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNCGC 62

[Close]

BLAST of CmoCh04G009700 vs. NCBI nr
Match: ACZ69388.1 (metallothionein-like protein type 3 [Cucumis sativus] >KGN56243.1 hypothetical protein Csa_011531 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-19
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHC 64
          CGNCDCSD + CVK+G+SYGAVI ENE S FDAI MD PAAEHNDKCSCNPCSC DC C
Sbjct: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDCGC 62

[Close]

BLAST of CmoCh04G009700 vs. NCBI nr
Match: PON68011.1 (Metallothionein-like protein type [Parasponia andersonii])

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC-NPCSCK 60
          MS KCG+CDC+D S CVKKG+SY  VI+E EKSY DA+ MD PAAEHN KC C   CSC 
Sbjct: 1  MSDKCGSCDCADKSQCVKKGSSYSLVIVETEKSYMDAVVMDAPAAEHNGKCKCGTSCSCV 60

Query: 61 DCHCG 65
          +C CG
Sbjct: 61 NCTCG 65

[Close]

BLAST of CmoCh04G009700 vs. NCBI nr
Match: PON91165.1 (Metallothionein-like protein type [Trema orientale])

HSP 1 Score: 90.5 bits (223), Expect = 5.7e-15
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC-NPCSCK 60
          MS KCG+C+C+D S CVKKG+SY  VI+E EKSY DA+ MD PAAEHN KC C   CSC 
Sbjct: 1  MSDKCGSCNCADKSQCVKKGSSYSLVIVETEKSYMDAVVMDAPAAEHNGKCKCGTSCSCV 60

Query: 61 DCHCG 65
          +C CG
Sbjct: 61 NCTCG 65

[Close]

BLAST of CmoCh04G009700 vs. TAIR 10
Match: AT3G15353.1 (metallothionein 3 )

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-12
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC---NPCS 60
          MS  CG+CDC+D + CVKKG SY   I+E ++SY +A+ MDV A E+N  C C   + CS
Sbjct: 1  MSSNCGSCDCADKTQCVKKGTSYTFDIVETQESYKEAMIMDVGAEENNANCKCKCGSSCS 60

Query: 61 CKDCHC 64
          C +C C
Sbjct: 61 CVNCTC 66

[Close]

BLAST of CmoCh04G009700 vs. TAIR 10
Match: AT3G15353.2 (metallothionein 3 )

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-09
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC---NPCS 60
          MS  CG+CDC+D +   KKG SY   I+E ++SY +A+ MDV A E+N  C C   + CS
Sbjct: 1  MSSNCGSCDCADKTQ--KKGTSYTFDIVETQESYKEAMIMDVGAEENNANCKCKCGSSCS 60

Query: 61 CKDCHC 64
          C +C C
Sbjct: 61 CVNCTC 64

The following BLAST results are available for this feature:

BLAST of CmoCh04G009700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24059	9.2e-16	60.00	Metallothionein-like protein type 3 OS=Malus domestica OX=3750 GN=MT2 PE=3 SV=1	[more]
A2WLS0	1.3e-14	60.61	Metallothionein-like protein 3A OS=Oryza sativa subsp. indica OX=39946 GN=MT3A P...	[more]
A1YTM8	1.3e-14	60.61	Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica OX=39947 GN=MT3A...	[more]
Q40256	1.3e-14	60.66	Metallothionein-like protein type 3 OS=Musa acuminata OX=4641 PE=3 SV=1	[more]
O48951	1.1e-13	56.25	Metallothionein-like protein 1 OS=Prunus avium OX=42229 GN=MT1 PE=3 SV=1	[more]

BLAST of CmoCh04G009700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GBS4	2.9e-20	81.36	Metallothionein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
D2J0B0	1.1e-19	79.66	Metallothionein-like protein type 3 OS=Cucumis sativus OX=3659 GN=MTP-3 PE=2 SV=...	[more]
A0A2P5D400	7.3e-16	66.15	Metallothionein-like protein type OS=Parasponia andersonii OX=3476 GN=PanWU01x14...	[more]
A0A2P5F066	2.8e-15	64.62	Metallothionein-like protein type OS=Trema orientale OX=63057 GN=TorRG33x02_1298...	[more]
A0A2N9F6R2	3.6e-15	62.12	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10356 PE=4 SV=1	[more]

BLAST of CmoCh04G009700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031367.1	2.6e-31	100.00	Metallothionein-like protein type 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
ADN33916.1	5.9e-20	81.36	metallothionein-like protein [Cucumis melo subsp. melo]	[more]
ACZ69388.1	2.3e-19	79.66	metallothionein-like protein type 3 [Cucumis sativus] >KGN56243.1 hypothetical p...	[more]
PON68011.1	1.5e-15	66.15	Metallothionein-like protein type [Parasponia andersonii]	[more]
PON91165.1	5.7e-15	64.62	Metallothionein-like protein type [Trema orientale]	[more]

BLAST of CmoCh04G009700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15353.1	3.7e-12	50.00	metallothionein 3	[more]
AT3G15353.2	3.8e-09	46.97	metallothionein 3	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G009700.1	CmoCh04G009700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046914	transition metal ion binding