CmoCh04G009630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G009630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pathogenesis-related thaumatin superfamily protein
Location	Cmo_Chr04: 4902152 .. 4902478 (-)
RNA-Seq Expression	CmoCh04G009630
Synteny	CmoCh04G009630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCTTGCCCCAGAGACAACCCAATACCCAGGAGTTTCTTGGGGCCCTCTCTTCATTTCAGTGGTATCGACGAATTTCAGAAGCTTAGGGGCTTGTACAGGCACTGGTGGACCCCCAGGATATACAGCAGAGTTTATATTCACATCAGCTGGTTTTGGAGGCGGTTTCTGAACTGCTGAGAAATGATGACTGATAAGTGTTGATATAAGTCCAGACTTGGCGGCCAGTCCAGGTGAACCTTCCCACTCTGCCTGCTTTACAACTGTAGCTCCCAAAACTGAACAGAAGAAGAGTCGCAGAAACAGAACATTTCTCATCCCATGA

mRNA sequence

ATGAGTCTTGCCCCAGAGACAACCCAATACCCAGGAGTTTCTTGGGGCCCTCTCTTCATTTCAGTGGTATCGACGAATTTCAGAAGCTTAGGGGCTTGTACAGGCACTGGTGGACCCCCAGGATATACAGCAGAGTTTATATTCACATCAGCTGGTTTTGGAGGCGACTTGGCGGCCAGTCCAGGTGAACCTTCCCACTCTGCCTGCTTTACAACTGTAGCTCCCAAAACTGAACAGAAGAAGAGTCGCAGAAACAGAACATTTCTCATCCCATGA

Coding sequence (CDS)

ATGAGTCTTGCCCCAGAGACAACCCAATACCCAGGAGTTTCTTGGGGCCCTCTCTTCATTTCAGTGGTATCGACGAATTTCAGAAGCTTAGGGGCTTGTACAGGCACTGGTGGACCCCCAGGATATACAGCAGAGTTTATATTCACATCAGCTGGTTTTGGAGGCGACTTGGCGGCCAGTCCAGGTGAACCTTCCCACTCTGCCTGCTTTACAACTGTAGCTCCCAAAACTGAACAGAAGAAGAGTCGCAGAAACAGAACATTTCTCATCCCATGA

Protein sequence

MSLAPETTQYPGVSWGPLFISVVSTNFRSLGACTGTGGPPGYTAEFIFTSAGFGGDLAASPGEPSHSACFTTVAPKTEQKKSRRNRTFLIP

Homology

[Close]

BLAST of CmoCh04G009630 vs. ExPASy TrEMBL
Match: A0A5A7QQC0 (Pathogenesis-related thaumatin superfamily protein OS=Striga asiatica OX=4170 GN=STAS_24359 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.6e-19
Identity = 57/109 (52.29%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 2   SLAPETTQYPGVSWGPLFISVVSTNFRSLGACTGTGGPPGYTAEFIFTSAGFG------- 61
           SLAP+TTQYPG S GP  ISV STN  S  AC G GGPPGYTAE  FTSAG G       
Sbjct: 30  SLAPDTTQYPGASCGPRIISVTSTNLSSFEACAGAGGPPGYTAELTFTSAGKGCFFWFWG 89

Query: 62  ------------GDLAASPGEPSHSACFTTVAPKTEQKKSRRNRTFLIP 92
                        DL   PG+PSHS   T  AP T +K+ RR  TFL P
Sbjct: 90  DVKWVLMSVEMRPDLRVRPGDPSHSGYLTATAPATVEKRRRRKSTFLKP 138

[Close]

BLAST of CmoCh04G009630 vs. ExPASy TrEMBL
Match: A0A540LPB7 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_026230 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-04
Identity = 39/92 (42.39%), Postives = 46/92 (50.00%), Query Frame = 0


Query: 2   SLAPETTQYPGVSWGPLFISVVSTNFRSLGACTGTGGPPGYTA--EFIFTSAGFGGDLAA 61
           SLAP TTQYPGVS GPL +S+VSTN    GA  G     G+ A    +        D   
Sbjct: 651 SLAPVTTQYPGVSSGPLNVSLVSTNVAIFGALLG-----GFNAVLNLVLIKVEMNPDFRE 710

Query: 62  SPGEPSHSACFTTVAPKTEQKKSRRNRTFLIP 92
               PSHS      A  T +  S +N+TFLIP
Sbjct: 711 VVEGPSHSD-LRIFADATVENPSLKNKTFLIP 736

[Close]

BLAST of CmoCh04G009630 vs. NCBI nr
Match: GER47269.1 (pathogenesis-related thaumatin superfamily protein [Striga asiatica])

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-18
Identity = 57/109 (52.29%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 2   SLAPETTQYPGVSWGPLFISVVSTNFRSLGACTGTGGPPGYTAEFIFTSAGFG------- 61
           SLAP+TTQYPG S GP  ISV STN  S  AC G GGPPGYTAE  FTSAG G       
Sbjct: 30  SLAPDTTQYPGASCGPRIISVTSTNLSSFEACAGAGGPPGYTAELTFTSAGKGCFFWFWG 89

Query: 62  ------------GDLAASPGEPSHSACFTTVAPKTEQKKSRRNRTFLIP 92
                        DL   PG+PSHS   T  AP T +K+ RR  TFL P
Sbjct: 90  DVKWVLMSVEMRPDLRVRPGDPSHSGYLTATAPATVEKRRRRKSTFLKP 138

[Close]

BLAST of CmoCh04G009630 vs. NCBI nr
Match: TQD88169.1 (hypothetical protein C1H46_026230 [Malus baccata])

HSP 1 Score: 54.7 bits (130), Expect = 4.9e-04
Identity = 39/92 (42.39%), Postives = 46/92 (50.00%), Query Frame = 0


Query: 2   SLAPETTQYPGVSWGPLFISVVSTNFRSLGACTGTGGPPGYTA--EFIFTSAGFGGDLAA 61
           SLAP TTQYPGVS GPL +S+VSTN    GA  G     G+ A    +        D   
Sbjct: 651 SLAPVTTQYPGVSSGPLNVSLVSTNVAIFGALLG-----GFNAVLNLVLIKVEMNPDFRE 710

Query: 62  SPGEPSHSACFTTVAPKTEQKKSRRNRTFLIP 92
               PSHS      A  T +  S +N+TFLIP
Sbjct: 711 VVEGPSHSD-LRIFADATVENPSLKNKTFLIP 736

The following BLAST results are available for this feature:

BLAST of CmoCh04G009630 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G009630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7QQC0	7.6e-19	52.29	Pathogenesis-related thaumatin superfamily protein OS=Striga asiatica OX=4170 GN...	[more]
A0A540LPB7	2.4e-04	42.39	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_026230 PE=4 SV=1	[more]

BLAST of CmoCh04G009630 vs. NCBI nr


Match Name	E-value	Identity	Description
GER47269.1	1.6e-18	52.29	pathogenesis-related thaumatin superfamily protein [Striga asiatica]	[more]
TQD88169.1	4.9e-04	42.39	hypothetical protein C1H46_026230 [Malus baccata]	[more]

BLAST of CmoCh04G009630 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G009630.1	CmoCh04G009630.1	mRNA