Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGGGTATTCAATTTCTGATGCTTTTGGCCTGCTTGGCTACTTCTTCTATGGCTCAGGCTCCTGGCGCTGCTCCCGCTCAGCCGCCCACCACCCCGGCTGTTCCGCCCCCGTCTACTCCTCCTCCAGCTGCCTCCCCACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACCACCGGCCACCCCACCTCCCGCCACCCCTCCTTCAGCAACCCCACCATCATCCCCACCGAGCCAACCACCAGCCACACCTCCTACATCTCCAGCACCGACCTCCTCTCCAACTGCGCCACCAAAGGAGGGTCCAGCCTCATCTCCATCTCCATCCACCGCGTCTCCACCATCACCACCAACGGAAGGAAACGTCCCCTCCGGCGCGCCTGGACCCAACGCTCCCCCACCCCCAGAAGATAATGGCGCAGTCTCCATTAGCCGGGTGGCGATGGTTGGCAGTGCTGTGAGCGGAGTTTTGTTGGCAATGGTGTTCGCTTAG
mRNA sequence
ATGAAGATGGGTATTCAATTTCTGATGCTTTTGGCCTGCTTGGCTACTTCTTCTATGGCTCAGGCTCCTGGCGCTGCTCCCGCTCAGCCGCCCACCACCCCGGCTGTTCCGCCCCCGTCTACTCCTCCTCCAGCTGCCTCCCCACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACCACCGGCCACCCCACCTCCCGCCACCCCTCCTTCAGCAACCCCACCATCATCCCCACCGAGCCAACCACCAGCCACACCTCCTACATCTCCAGCACCGACCTCCTCTCCAACTGCGCCACCAAAGGAGGGTCCAGCCTCATCTCCATCTCCATCCACCGCGTCTCCACCATCACCACCAACGGAAGGAAACGTCCCCTCCGGCGCGCCTGGACCCAACGCTCCCCCACCCCCAGAAGATAATGGCGCAGTCTCCATTAGCCGGGTGGCGATGGTTGGCAGTGCTGTGAGCGGAGTTTTGTTGGCAATGGTGTTCGCTTAG
Coding sequence (CDS)
ATGAAGATGGGTATTCAATTTCTGATGCTTTTGGCCTGCTTGGCTACTTCTTCTATGGCTCAGGCTCCTGGCGCTGCTCCCGCTCAGCCGCCCACCACCCCGGCTGTTCCGCCCCCGTCTACTCCTCCTCCAGCTGCCTCCCCACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACCACCGGCCACCCCACCTCCCGCCACCCCTCCTTCAGCAACCCCACCATCATCCCCACCGAGCCAACCACCAGCCACACCTCCTACATCTCCAGCACCGACCTCCTCTCCAACTGCGCCACCAAAGGAGGGTCCAGCCTCATCTCCATCTCCATCCACCGCGTCTCCACCATCACCACCAACGGAAGGAAACGTCCCCTCCGGCGCGCCTGGACCCAACGCTCCCCCACCCCCAGAAGATAATGGCGCAGTCTCCATTAGCCGGGTGGCGATGGTTGGCAGTGCTGTGAGCGGAGTTTTGTTGGCAATGGTGTTCGCTTAG
Protein sequence
MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVSGVLLAMVFA
Homology
BLAST of CmoCh04G008980 vs. ExPASy TrEMBL
Match:
A0A6J1FLZ3 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111447028 PE=4 SV=1)
HSP 1 Score: 223.0 bits (567), Expect = 1.0e-54
Identity = 149/189 (78.84%), Postives = 149/189 (78.84%), Query Frame = 0
Query: 1 MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXX 60
MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAAS
Sbjct: 1 MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAAS------------- 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSP 120
PPPATPPSATPPSSPPSQPPATPPTSPAPTSSP
Sbjct: 61 ---------------------------PPPATPPSATPPSSPPSQPPATPPTSPAPTSSP 120
Query: 121 TAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVS 180
TAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVS
Sbjct: 121 TAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVS 149
Query: 181 GVLLAMVFA 190
GVLLAMVFA
Sbjct: 181 GVLLAMVFA 149
BLAST of CmoCh04G008980 vs. ExPASy TrEMBL
Match:
A0A6J1J5L5 (classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111482820 PE=4 SV=1)
HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 119/191 (62.30%), Postives = 133/191 (69.63%), Query Frame = 0
Query: 1 MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXX 60
MKMG QF+M+LA ATSSMAQAPGAAPAQPPTTPAVPPPSTPPP +P
Sbjct: 1 MKMGFQFVMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP------------ 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXPPPATPPPA-TPPSATPPSSPPSQPPATPPTSPAPTSS 120
PPPATPPPA TPP + PPSSPP+QPPA+PPTSP P
Sbjct: 61 --------------ATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTP--- 120
Query: 121 PTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPE-DNGAVSISRVAMVGSA 180
PPKEGPASSP+PS+ASPPSPP+EG VPS +PGPN+PPPP DNGA ++SR MVG A
Sbjct: 121 ---PPKEGPASSPTPSSASPPSPPSEGMVPSASPGPNSPPPPPGDNGAATVSRGVMVGGA 159
Query: 181 VSGVLLAMVFA 190
V+G LLAMVFA
Sbjct: 181 VAGALLAMVFA 159
BLAST of CmoCh04G008980 vs. ExPASy TrEMBL
Match:
A0A0A0L0L1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1)
HSP 1 Score: 161.8 bits (408), Expect = 2.9e-36
Identity = 123/194 (63.40%), Postives = 134/194 (69.07%), Query Frame = 0
Query: 1 MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXX 60
MKMG QF+M LA ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPP----------- 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSA-TPPSSPPSQPPATPPTSP---AP 120
PPPATPPPATPP A TPPSSPPSQPPA+PPTSP +P
Sbjct: 61 --------------PATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSP 120
Query: 121 TSSPTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMV 180
+S PTAPPKEGP SP T+SPPSPP EGNVP+ +PGP+ PPPPE NGA S+SR MV
Sbjct: 121 SSPPTAPPKEGPI---SPPTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMV 166
Query: 181 GSAVSGVLLAMVFA 190
G AV+G LAMVFA
Sbjct: 181 GGAVAGAFLAMVFA 166
BLAST of CmoCh04G008980 vs. ExPASy TrEMBL
Match:
A0A5D3CV77 (Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00250 PE=4 SV=1)
HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 122/194 (62.89%), Postives = 134/194 (69.07%), Query Frame = 0
Query: 1 MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXX 60
MKMG QF+M LA ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPP----------- 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSA-TPPSSPPSQPPATPPTSP---AP 120
PPPATPPPATPP A TPPSSPPSQPPA+PPTSP +P
Sbjct: 61 --------------PATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSP 120
Query: 121 TSSPTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMV 180
+S PTAPPKEGP SP T+SPPSPP EGNVP+ +PGP+ PPPPE NGA S+SR MV
Sbjct: 121 SSPPTAPPKEGPI---SPPTSSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMV 166
Query: 181 GSAVSGVLLAMVFA 190
G AV+G LAM+FA
Sbjct: 181 GGAVAGAFLAMIFA 166
BLAST of CmoCh04G008980 vs. ExPASy TrEMBL
Match:
A0A5A7UE17 (Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G001110 PE=4 SV=1)
HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 122/194 (62.89%), Postives = 134/194 (69.07%), Query Frame = 0
Query: 1 MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXX 60
MKMG QF+M LA ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPP----------- 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSA-TPPSSPPSQPPATPPTSP---AP 120
PPPATPPPATPP A TPPSSPPSQPPA+PPTSP +P
Sbjct: 61 --------------PATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSP 120
Query: 121 TSSPTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMV 180
+S PTAPPKEGP SP T+SPPSPP EGNVP+ +PGP+ PPPPE NGA S+SR MV
Sbjct: 121 SSPPTAPPKEGPI---SPPTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMV 166
Query: 181 GSAVSGVLLAMVFA 190
G AV+G LAM+FA
Sbjct: 181 GGAVAGAFLAMIFA 166
BLAST of CmoCh04G008980 vs. NCBI nr
Match:
XP_023545089.1 (classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 232.3 bits (591), Expect = 3.6e-57
Identity = 153/187 (81.82%), Postives = 153/187 (81.82%), Query Frame = 0
Query: 3 MGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXXXX 62
MGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPP
Sbjct: 1 MGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPP------------- 60
Query: 63 XXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPTA 122
PPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPT
Sbjct: 61 -PATPPPAATPPPATPPPATPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPTP 120
Query: 123 PPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVSGV 182
PPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVSGV
Sbjct: 121 PPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVSGV 173
Query: 183 LLAMVFA 190
LLAMVFA
Sbjct: 181 LLAMVFA 173
BLAST of CmoCh04G008980 vs. NCBI nr
Match:
XP_022941756.1 (classical arabinogalactan protein 9-like [Cucurbita moschata])
HSP 1 Score: 223.0 bits (567), Expect = 2.2e-54
Identity = 149/189 (78.84%), Postives = 149/189 (78.84%), Query Frame = 0
Query: 1 MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXX 60
MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAAS
Sbjct: 1 MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAAS------------- 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSP 120
PPPATPPSATPPSSPPSQPPATPPTSPAPTSSP
Sbjct: 61 ---------------------------PPPATPPSATPPSSPPSQPPATPPTSPAPTSSP 120
Query: 121 TAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVS 180
TAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVS
Sbjct: 121 TAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVS 149
Query: 181 GVLLAMVFA 190
GVLLAMVFA
Sbjct: 181 GVLLAMVFA 149
BLAST of CmoCh04G008980 vs. NCBI nr
Match:
KAG6600667.1 (hypothetical protein SDJN03_05900, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 220.3 bits (560), Expect = 1.4e-53
Identity = 152/196 (77.55%), Postives = 154/196 (78.57%), Query Frame = 0
Query: 1 MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXX 60
MKMGIQFLM+LACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPP
Sbjct: 1 MKMGIQFLMVLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPP----------- 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSATPPS-SPPSQPPATPPTSPAPTSS 120
PPPATPPPATPP ATPPS +PPSQPPATPPTSPAPTSS
Sbjct: 61 --------PATPPPATTPPPATPPPATPPPATPPPATPPSATPPSQPPATPPTSPAPTSS 120
Query: 121 PTAPPKEGPAS------SPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVA 180
PT PPKEGPAS SPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVA
Sbjct: 121 PTPPPKEGPASSPSPSPSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVA 177
Query: 181 MVGSAVSGVLLAMVFA 190
MVGSAVSGVLLAMVFA
Sbjct: 181 MVGSAVSGVLLAMVFA 177
BLAST of CmoCh04G008980 vs. NCBI nr
Match:
XP_022984561.1 (classical arabinogalactan protein 4-like [Cucurbita maxima])
HSP 1 Score: 162.9 bits (411), Expect = 2.6e-36
Identity = 119/191 (62.30%), Postives = 133/191 (69.63%), Query Frame = 0
Query: 1 MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXX 60
MKMG QF+M+LA ATSSMAQAPGAAPAQPPTTPAVPPPSTPPP +P
Sbjct: 1 MKMGFQFVMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP------------ 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXPPPATPPPA-TPPSATPPSSPPSQPPATPPTSPAPTSS 120
PPPATPPPA TPP + PPSSPP+QPPA+PPTSP P
Sbjct: 61 --------------ATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTP--- 120
Query: 121 PTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPE-DNGAVSISRVAMVGSA 180
PPKEGPASSP+PS+ASPPSPP+EG VPS +PGPN+PPPP DNGA ++SR MVG A
Sbjct: 121 ---PPKEGPASSPTPSSASPPSPPSEGMVPSASPGPNSPPPPPGDNGAATVSRGVMVGGA 159
Query: 181 VSGVLLAMVFA 190
V+G LLAMVFA
Sbjct: 181 VAGALLAMVFA 159
BLAST of CmoCh04G008980 vs. NCBI nr
Match:
KAA0053440.1 (classical arabinogalactan protein 9 [Cucumis melo var. makuwa])
HSP 1 Score: 161.4 bits (407), Expect = 7.7e-36
Identity = 122/194 (62.89%), Postives = 134/194 (69.07%), Query Frame = 0
Query: 1 MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXX 60
MKMG QF+M LA ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPP----------- 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSA-TPPSSPPSQPPATPPTSP---AP 120
PPPATPPPATPP A TPPSSPPSQPPA+PPTSP +P
Sbjct: 61 --------------PATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSP 120
Query: 121 TSSPTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMV 180
+S PTAPPKEGP SP T+SPPSPP EGNVP+ +PGP+ PPPPE NGA S+SR MV
Sbjct: 121 SSPPTAPPKEGPI---SPPTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMV 166
Query: 181 GSAVSGVLLAMVFA 190
G AV+G LAM+FA
Sbjct: 181 GGAVAGAFLAMIFA 166
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1FLZ3 | 1.0e-54 | 78.84 | classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
A0A6J1J5L5 | 1.3e-36 | 62.30 | classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC11148... | [more] |
A0A0A0L0L1 | 2.9e-36 | 63.40 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1 | [more] |
A0A5D3CV77 | 3.7e-36 | 62.89 | Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
A0A5A7UE17 | 3.7e-36 | 62.89 | Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
Match Name | E-value | Identity | Description | |
XP_023545089.1 | 3.6e-57 | 81.82 | classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022941756.1 | 2.2e-54 | 78.84 | classical arabinogalactan protein 9-like [Cucurbita moschata] | [more] |
KAG6600667.1 | 1.4e-53 | 77.55 | hypothetical protein SDJN03_05900, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022984561.1 | 2.6e-36 | 62.30 | classical arabinogalactan protein 4-like [Cucurbita maxima] | [more] |
KAA0053440.1 | 7.7e-36 | 62.89 | classical arabinogalactan protein 9 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |