CmoCh04G008780 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G008780
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 4416421 .. 4419004 (-)
RNA-Seq ExpressionCmoCh04G008780
SyntenyCmoCh04G008780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGCTCCATCAACGGCATTTTTGCCTCGTCCCGGCGATGAAAAAAAGAGGTAATGTAACTTGATTTCAGCCGTTAATTGTGTGGGTTGTTTGGACTTGACTACTATGTTCAGGGTTTGAAATTTTAAGGGCACATTGGCTATTTGGATTTAGGGGTTTATTGGAGAACTTCGTTCCGATTTAGGGTTTCACTGGAGAACTTCAGAGGTTAATCGAAGGATCGTTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCTATTTTCGATACCTTTTGTATTTTTCGTGGTTTTGATTACGGAGGATTAGGGTGATTTTAGTAGGTTCATTGTTCCCATGGTAACGCGATTATTATCTTTGAACTCTTCGTTTCATTCCCTGTCGTCTTCTATCTCTTCTCTGTGCGGGGATCCGGGGACAAACCTGATATTCAAATTTATATGTTGGCAGAAGAGAGGAGGACGACGAACTCTTATATCATTGAGATTGGTTCCGATAACAGAGAGGGGAAGAACAAAGCAGTTGCTCATGATGGAGTGATTGCTCAGGAGAAAGAAAATCAGTTGGTCCTGTCATTGAGGCCGGTGGGATTTTCGCATCTGCTAAGAATACTGGTATGATTCCAAGCCCAAGGCTATGAAATTGAATTCAAGTTTTTGGGGTCGTAGGAAGTAATTGTTGTTTATAAGTTTATTTATTATTTATTATTTATTATTATTTGTTGGCTGTGAAGATGTGAATTGTAGCTTTAGCTGCTTTAGATGTCACCTCTATTTGTTGGAGCAGGGATTATGTCAGCATTTGACTGCAAGTTCTATTTTGTGATGTTATAGTTTTCAGTATTTGTTTGTCTCTGAATGCTAGTATGCCCAAGTTTCTTACAATAGTATTCCATTTTCTGAACATGCACAGCTTTGCATTTAGATTCATCTAAAAGATCAAGGAAGATGTACTCTTCTCCACTTTTACTTCAATTTCTGCACTAATTAGTCGTAAGGCCCTCATAGTTGAGTTGAGTGGCAGTTTCGAAGCTAGCCAACACATTTGAGGCTGAGGCTGAGGGTATCTTGTTGTTATATGTATTTGTGCACACACTTACCTTCTGGAAAAAATACTGTTGAGATTTTCAAACTAGTCATATTTTATGAGGGATGAAATTTGTTAGATTTCATTTTGTTTTTCAATCATTGGAGTTTTTGAGAATGAGTTTCTAGTTCTGAATTTGTTCTTATAAACATTCCTCTAGGTCATGACGATGAACTATACGAGAGATATATTAGTGTCTGAATCAAATTTTGAGACTGATTTGAGCCTAAGTGTTGAGATATAATATTTGGAAAATATATTATTCTAATTAGTTATAGAATATATCTTAGATATTGTTTATCAGTTAATATTCTTTATTTATGATTTATATATTATTCTAATTAGTTATAGAATATATCTTAGATATTGTTTATCAGTTAATATTCTTTATTTATGATTTGATTAGTAGTATATTTTATTTTATTCTCAATATTTAATTAATTTATATTTCCTTATCGGGAGGTATTAGTTGGTAGCTTGGATTCTATTGAAACATTATGAATATCAATGAGAATACACACCTTCAATTACAATTCTATTTCTCATTATTAACATGGTATCAGAACACCGATCTTGGGATTCTTAAATATCAAAATTTGCTAGGGTTTGGTAAGCCAAACTCTAACTCAATCAGTAAGCCATTAAAAATGAGAAATAGAATTGGGATCGAATGTGGGTATTTTAATGGATATTCATAACATTTAAATAGGATACATGGGATCAAAGGTGGGTATTTTGATGGATATTCATAACATTTAAATAAGGTGGGTATTTTAATGGATATTCATAACATTTAAATAGGATACATGGGATCAAAGGTGGGTATTATGATGGATATTCATAACATTTAAATAGAATACAAGCTACTAACTAGGAAAATATAAACTAATTAAATATTAAGAATAAAATAAAATATACTATTAATCAAATCAGGAAGTTAATAATGAAGTTAAGAATATGAACTGATTACGAATATATAAGATATATTCCATAGCTAATTATTATAATATATTCTCTAAATATTATATCTGACCATCAATTTGTTGAAATCGAAGGTACTTTCTTTGTTCAACTTAATGACTTCTTTGAATTGAAGATCAATGCATAACTGTTTTTTTCCTTGAAAATATCATGCAGAATGGTCCGATTCATGTAAAGTTCATTGTAAACAATTAGGGATGCGTCACACAACCCACTAAGGTAAACCATTGCTTTTACAAAACTCTTATCATTTTATTTACTCGTCAAACTTTAACAAAAATGGTTAATGTTCACTTTTAATGGTTTCAAATTATCCCATATCTCATTGGTTTGATATTATTGCTCATATTTCCTTTGTTATGGAGAAGATTTTGATTCATAACTATGTTGTGAAAATTCAGATGGTAATGGAGGACTGATAGAGATAATAAAGTTTGATGTCAAGGAATCCAACTCTGGTTGCTACTTTCAATACTAAACTAATACTAAACTAGAATGAAGGTTAAAGTTGAAAGGAGT

mRNA sequence

GCGCTCCATCAACGGCATTTTTGCCTCGTCCCGGCGATGAAAAAAAGAGAAGAGAGGAGGACGACGAACTCTTATATCATTGAGATTGGTTCCGATAACAGAGAGGGGAAGAACAAAGCAGTTGCTCATGATGGAGTGATTGCTCAGGAGAAAGAAAATCAGTTGGTCCTGTCATTGAGGCCGGTGGGATTTTCGCATCTGCTAAGAATACTGAATGGTCCGATTCATGTAAAGTTCATTGTAAACAATTAGGGATGCGTCACACAACCCACTAAGATGGTAATGGAGGACTGATAGAGATAATAAAGTTTGATGTCAAGGAATCCAACTCTGGTTGCTACTTTCAATACTAAACTAATACTAAACTAGAATGAAGGTTAAAGTTGAAAGGAGT

Coding sequence (CDS)

ATGAAAAAAAGAGAAGAGAGGAGGACGACGAACTCTTATATCATTGAGATTGGTTCCGATAACAGAGAGGGGAAGAACAAAGCAGTTGCTCATGATGGAGTGATTGCTCAGGAGAAAGAAAATCAGTTGGTCCTGTCATTGAGGCCGGTGGGATTTTCGCATCTGCTAAGAATACTGAATGGTCCGATTCATGTAAAGTTCATTGTAAACAATTAG

Protein sequence

MKKREERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILNGPIHVKFIVNN
Homology
[Close]
BLAST of CmoCh04G008780 vs. ExPASy TrEMBL
Match: A0A6J1ING1 (uncharacterized protein LOC111478006 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478006 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 0 

Query: 1   MKKREERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILN 60
           +K REER+TTNS +IEIG+DN EGKN+ VA D VIA  KE Q VLSLR          L+
Sbjct: 175 VKNREERKTTNSDVIEIGADNGEGKNETVALDEVIAWAKEKQFVLSLR----------LD 234

Query: 61  GPIHVKFIVNN 72
           G IHVKF+ N+
Sbjct: 235 GTIHVKFVANS 235

[Close]
BLAST of CmoCh04G008780 vs. ExPASy TrEMBL
Match: A0A6J1IL14 (uncharacterized protein LOC111478006 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478006 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 1   MKKREERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPV 51
           +K REER+TTNS +IEIG+DN EGKN+ VA D VIA  KE Q VLSLR V
Sbjct: 175 VKNREERKTTNSDVIEIGADNGEGKNETVALDEVIAWAKEKQFVLSLRLV 224

[Close]
BLAST of CmoCh04G008780 vs. ExPASy TrEMBL
Match: A0A6J1FJ97 (uncharacterized protein LOC111446232 OS=Cucurbita moschata OX=3662 GN=LOC111446232 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.0e-04
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 2   KKREERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILNG 61
           + R  RRT   Y+IEIG    E + + +A D VI   K  QLVLSL PVGF HLL  L+G
Sbjct: 106 RSRGGRRTL--YVIEIGYMITE-RGRTLALDEVIVGAKLKQLVLSLWPVGFWHLLGRLDG 165

Query: 62  PIHVKFIVNN 72
            +HVKF+ N+
Sbjct: 166 LVHVKFVANS 172

[Close]
BLAST of CmoCh04G008780 vs. NCBI nr
Match: KAG6600651.1 (hypothetical protein SDJN03_05884, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.6 bits (353), Expect = 5.3e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MKKREERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILN 60
          MKKREERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILN
Sbjct: 1  MKKREERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILN 60

Query: 61 GPIHVKFIVNN 72
          GPIHVKFIVNN
Sbjct: 61 GPIHVKFIVNN 71

[Close]
BLAST of CmoCh04G008780 vs. NCBI nr
Match: KAG7031288.1 (hypothetical protein SDJN02_05328, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.0 bits (271), Expect = 1.7e-20
Identity = 58/71 (81.69%), Postives = 60/71 (84.51%), Query Frame = 0 

Query: 5  EERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRIL----- 64
          EERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRIL     
Sbjct: 4  EERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILLSLRS 63

Query: 65 ----NGPIHVK 67
               G +H+K
Sbjct: 64 SERRRGTLHLK 74

[Close]
BLAST of CmoCh04G008780 vs. NCBI nr
Match: KAG7030840.1 (hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.9 bits (180), Expect = 6.1e-10
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 5   EERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRIL 60
           EE RTTNSY+IE  SDNREGKNKAV  D VIA   E Q VLSLR VGFSHLL IL
Sbjct: 196 EESRTTNSYVIEFCSDNREGKNKAVVLDEVIAWATEKQFVLSLRLVGFSHLLGIL 250

[Close]
BLAST of CmoCh04G008780 vs. NCBI nr
Match: KAG6600176.1 (hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 6.1e-10
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 5   EERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRIL 60
           EE RTTNSY+IE  SDNREGKNKAV  D VIA   E Q VLSLR VGFSHLL IL
Sbjct: 196 EESRTTNSYVIEFCSDNREGKNKAVVLDEVIAWATEKQFVLSLRLVGFSHLLGIL 250

[Close]
BLAST of CmoCh04G008780 vs. NCBI nr
Match: KAG7011932.1 (hypothetical protein SDJN02_26840, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.6 bits (179), Expect = 7.9e-10
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 5   EERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRIL 60
           EE RT NSY+ EI S NREGKN AVA D VIA   E QLVLSLRPVGFSHLL IL
Sbjct: 90  EESRTMNSYVSEICSSNREGKNNAVALDEVIAWTTEKQLVLSLRPVGFSHLLGIL 144

The following BLAST results are available for this feature:
BLAST of CmoCh04G008780 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G008780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ING11.5e-0957.75uncharacterized protein LOC111478006 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1IL141.2e-0668.00uncharacterized protein LOC111478006 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1FJ977.0e-0450.00uncharacterized protein LOC111446232 OS=Cucurbita moschata OX=3662 GN=LOC1114462... [more]
BLAST of CmoCh04G008780 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600651.15.3e-30100.00hypothetical protein SDJN03_05884, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7031288.11.7e-2081.69hypothetical protein SDJN02_05328, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7030840.16.1e-1074.55hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6600176.16.1e-1074.55hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011932.17.9e-1074.55hypothetical protein SDJN02_26840, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh04G008780 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G008780.1CmoCh04G008780.1mRNA