CmoCh04G008220 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G008220
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ubiquitin-conjugating enzyme family protein
Location	Cmo_Chr04: 4086461 .. 4098063 (-)
RNA-Seq Expression	CmoCh04G008220
Synteny	CmoCh04G008220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATCAGAGCATAGAGAAAGGGAAAGGGCTCAGAGAAGAAAAACAGCAACAGCAACAGCAAGAGGAGGAAGAAGCAGCAGCAGCAGCATATGAGTGGATATGGGACTTTTGTGGTGTATTTAAGTTAGCACTTCGCCCCTTCCCCCCACTGCGCAACAAAGCTCATGGCGGCGTTGCAGACTTCACTTCAGTTTTAGACAGAGAGAGAAAAATACCCTTTAATGTATTAGAGAGACAGAGAGACAGAGAGAGACAGAGAGATTTCAGAATCTGATTCCCAATTCGACCTCTTTTCTACCTTCCCCCCTTTTTTTTTTCTCTTGTAGTACGAAGAATTTGATTAAGAATTTCGAGAATTTGAGAAGGTAAGGAGAAAAAGTTGGAAAGGAATTGATTGATACATACCCTTTTTACAACTCTGGCTTTCGATCGCTCTTGAGAGGTTGTTTCTGATATGGATTTTAATTCCAAATCAGGAATAGTATCTCCGGTGGAAATATGGCCGGTTTTTTCCCACTAGGCGGCGGAAGAGAACCCAATTATCACCTTCCCACCACCACCACCACCACCACGGACGGATTATTTTGGTACAGAAATTATGAGAGCCTTGGAATTTGGCAGCAACAGCAGGTGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCGGGCGATGAATCGCCTCCAAGATCGTCGTTGGTGATGCTGAGATCCGGCAGAAACGGGGGAGGGCAAGTAATAAGCTGCCAAGATTGTGGAAATCAAGCCAAAAAGGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGTCGTGGCTTTGACTGTGAAACCCACGTCAAAAGTACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGACACCTCCGCAGCGACGGCACTAATCTCAAACGACCTCGAGACAACACCGCCGCTTCCTCAGGTACAATCAAATTAATTCTTGCTGTTTTCATTTTTTTTATATTTTATTTTATTTTTAGATTTCTTGTGAGGGAGGGCTTTGTTTTGGAAGTTTTTCCAAATTCCAGCAAGACCCACATCGATTTTGGTCATGATTGACAGAATCAATCTCTCTCTTTCTCTAAAATGGTCTCTTTTTTTTCTTTTTTCTCTTTTTAAAATTTTGGTTTTAGGGTTAGAAATGAGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTGCGAATGACAACGTTGGACGAAACCAACGACCAATTTGCTTACCAAACAGCCGTCAACATCGGAGGCCATACCTTCAAGGGCATTCTTTACGACCACGGCCCTGAACAACAACAACAACCACCACCACCACCACCCAACTCCGCCTCCCCCGACGGTGGCGCCCTCCTCATCACCGCCCCCTCCACCACCATGGAATTGCCACCCATCAGCGCCGCATTGCTCGATCCTCCTCCGCCGTACCCAGCTCCTCTGAACACCTACGTCGCCGCCGGTACGCAATTTTTTCTTCCCCCAACGTCTTAATGTCGTAATGAATTTTATGAGATCGAAGAGAATTAGCTGAAATTGAGAACGGAGAATGAGGGAAGTATGTGGCACGAGTATATAATTTTTTTTATCATAAATTTATAAGCTTTTAATTTTTCAAGAGTTCGCATTAATGTGCCGCCATTGTTGGAACTTCGATGCTCCCTTTTATCCTTTTTTTTTTTTTTTTTCTTTTTCCTTTCTTCTCGGTTTCGTATTTGGTAATTCTCAACCCCCTCAACCCCTTTTATTTTTAATTAATTATATGATTTCAATCTATTTTGATTGGTTATTTAATGTTTTATACCTATGTTTTAAATGAAATTTTGAATTTTAAAATTTAAATTACAAGTTTCAAAGGACAGATTATTAAAACGAGGAAATTATTCTATGTTTTTTTTATATAAAAATAATGTGAACAGCATGTCAATCAATCACAATTAATGTATTTAGTGAATGAAAAATGTGAAATGCTGTAGCTAGACAACTATGAATGTGACAATTTCATTTTTTTTTTACCAAAAAGAAAAAGAAAATTAATAGCTGTTATTTCAATAATTCGAAAATTTTATTCACACCCTCTCTTTCTCTCCTATGCATCACTTTCATACACATTGTCACTCTAGTCATTTTTAATATGCATTACATTTATGTTATGTACTTAGAACATGCATCATTTTCATACAATCAAATATTATATGCATGAAGTCTTATTAGTATATATAACATACGTATATATTTTCATTTTTACCACATACCATATATGTCATTATATTCAAACAATCGTATAAACATTTCGAAAAGCACCCAACCTAGCCCTAAGACTTTCTAGCAATAGATTTTCGACAATGAAATTAATTTTCCTTTAGCATACGGAAGCTTTGGTTCTATTGTAAATCACAATTTTAAATTAATTAGAATATTTAGGACGGGCGATTTAAAGAGTTTACCCGAACTCCATTAACAATATAAACTCTTAAAGAACAAAGGAAAACTTTTTAAGAACAAAAAGTTTTAACCTTGAAAACGTAAAAGTCTTCTTGATTCTTTTACATTTTTTTCTTAACGGGTTAAGTATTAAAAATACCAAGAATCCACTATTTGAATTGAGATATGCAATCGCATGCAACTATGACTTATGCTAAAACAATTAAAGTAAGACATTCTTTAGATGTGCATCACTCTCACACCGGCAATCATAACTCATGTAACTATGACTACAAAAGAGTGCATAGTTGCAACATATTTAAGGTGATGGAGAAAGAATAAATCGAGAGGGAAAAAGAGTTAGAGCGAGAGAGACTTAGAGAGTTAGTGATTAACGGAGCTAAGATCTAACGACCCTACTTCTAGGATAAGACTCGCGGAAGGATTTAAAAGAAAAAAACCCGTAACTTTAATTTTTTCTTTAATCTATAAAATTCTTGGTCAAACCTTGAATCAACTATTTTTAAGCCCAATTTTTTTTTTTTTTAAAAAAGAAGTCGCATGAGCACAATTAACTTAATTGACCAAAACATCTCAAAAGAGGATTGAGCCCAAAATTCAAAAGAAAAATAATCTAAAAATTAATCTCATTTTATTATTTTGACGGAAGAATTTAAGTAATTGATTAATTTGTTAAGAAGTAAAATGATAAACAAATGAATATAGTCCACCCAAAATGAATCACTAAGAACCTAATTTATTATACCATCTTTAGCAAACCAATAAAAAATATGGAAAAATATAGAAATAAATTACAAAATGAGATGAACGAATAAACTTTAATTCATCTGTAATGTTTTATATATTTTTTTAACACAAAATCGAAAAACTAAAACGAAAAGAAAAAAAAAAAATGAAGGTATGAAATAGAGTAGCAGAAAAGAATGATGCAGGGAAGTGAAGAAAGACGAACCTGCATTGACATTGGAACGACATGGAGGGTAAGACTTGAGTTGATGAAGAGATCAAAACAACCGGTGTTTGACGGTAGCAGAAATCTGTGACGGCGCCGGCGGATTGGGAAATGAAAGGAGATGAAGCAGAGTGAGATCGATGAGGAGGGTGGAGAATTTGAAAGGGTTTTGTTTAAAATCCCAAATTTAACACTCAGATTCTTGCATTGCATCATTAGCAATCATGAGCTTCTTCCTACGTTTTTTCTTTCACTCCTTTTAAATTGGTGAAGTTTTTGGAAAATAAAATAAATTTAATCTCTCAGTTTTTAATAATATATACAAATAATTAGATAAGTGGTCATATTCTAAGTAGATTTTAATATAAATCACCTTTTAGAAAAGTCAACTTTAAAGATAAAGTGTCTCGATTCTTCCATCAATTTCATTAGATTTCGCTGTTTATTGGATTCGCATCTACAATTAAAAGATATGAAGTTGTTTTAAATCAAGAATGTTGGTATATTGATTTTTGAAACTTAATTTGCAAAACAAAATTAAAATAAAAAACCAAAAAGAAAAGTCACCCATGAAGAAAATAAAAAATAAAAAAAAAACGGAAAAATACACATGTGAGAAAACCCTAAAAAGTTGGAAAAGATGGTTATGGGAGTGATGGAAAAAGGAGTAGCTTCTAGGAATCACGTGAAAGCAAAATGGAAGAAAAGAAGAAGAAGAGAAATAGGGGATTAGGGTATTAGGGCATTAGGGCATTAGGGCATTAGGGCATTAGGGCATTAGGGCCTTAGGGTGGTGGCAGCACCAGTGGACTTTAATAATTAATAATCTCATGCCATAACACAATAGGGTATAGCATTTTCAGCACCTTCATAATTATTAACCACCACGGTTGATCTAAACATATTCAACTGTTTTGTGTTGGAAGAACAGAAGAAGAGAGAATTATGTGAAAATCTTATGTTTTTTTTGGGTTTATCTTGTTTGGATTGAGCAACTCTTCTGAAAAAGCTTCAGGATTTGTGTGAATCCTTGGGCTAAGCTTGTATTATGACATAAATAATGGTGAAACAGCATAGTTTCTTGAGATTTTTATTGACCATATTGGGATTGGAACATTTTGAAATTGGTAAACCTACAAGTCTAAGGACTGTAAATTCTCATAGATTATGATGAAAAGCATTACAAAGTCTACATTAACAGTTGCGTTGTGTTCATCATCATTACAACACACAAACACACAAGTATTTTAATCTAAATGCTTCAATTCCTCAAAACCCATTGTTAAGTTTGGGAATCCGAGTGAGTTGACAGCACTGCCAATTCACTCCTTATGTAATAATTGAACCCAAACCCTCCAAAATGGATAGCTTTTGGGTATACAGTTTGAGCCAGGAAATGGTAGAACTTGGGGGGAGGAGAAGCACTATTGTTTGGGGGCCAACTCTTTTCAGCTCTCCCATTATGCCGTCTGGCAATGCCCCTTCAAACTTAACATAAACCAACCATTCAACAAATTTCACTGTTTTGGTCAGACCCCATTTTTAAGCAACAATTATACATTCTTACACTTTGCATTATTGCATTGTAGTGTACCAGAGATGCCTCAAAGTGCAATTCAATGTGTCTGTAGGTAGCAGGTCAGCTTTCAGATTCAGGGTAATTCTTAAAATTGAGCGAAACTGGTTTTTATTTTCAAAATAAAATGTATTTTTGACACCTAATTTTGTGAGAAGATGGGTAAAATGTCCTTTATGCCCCTAAAGCGGATAAACTATGAGCCTCTCTCGTTTCCGCCCAATTTTTTCTCCTCTCCTTTGTTTCTTGTCAATAAAGAACAAGAAAATCCGATCCAGTCGAAATTTCTCAGATTTCAGAGCTTTTCAATTCCAAAATCTTCAAGATCTTTCAAATTTGGGCTTGTGGGCGGCGGAAGAGTCGTCGCCGGCAGTGGATACGTCTTGGTGAAGGAAGCTGGGAGGAGAGGCCGGAGAGGTAGGAAGAGGTAAAACGAGAGAACTAAAATTTCTCCGCTACTGGTGCAAACCGATGAATTTGATCGGTTATCGGTAGGTCGTTCACACGATCTTTCTTCACCAAAATTGTTCCGATAGGTAACTTCTCTGAAAATCTGTTTTGTTCTTCAATTTCTTTCAGTAGCTTGCTTGTTTTACCAGTTTGATTTTCCTGGATGTTTGGGAGTTGAACAGCCTAGTTTCATGCTTGTTTTCTGCGATTATCCCAATAAAGATTTCAGGGGATTAGCTGAGATTATGAAATTGGGATTGTTTAGCTTAGGTTAATTTTTTGTTGAACCTCTGTCAAATTGAGGGTTTTCAATTTCACTTCAGGAAGCATCTTATAACTCTGGAAATGGGATCAAGTAATGACCCTGAGAATCAAATGATGATAGAAGGAAATGTTGTTCAGAAAATGAAAATTGATCCGGAGAGAGCTCGGTTTCCATGTTGCATTGTGTGGACACCTCTTCCTGTTATTTCCTGGCTCATTCCTTTCATTGGTCACATTGGTATTGGCAGAGAGGATGGAGTGATCTTGGACTTTGCAGGCCCCAATTTTGTTTGCGTGGACAACTTCACATTTGGAGCAGTCGCACGGTATCTTCAAATCAACACAGACAAGGTAACTTTCGATAGGAACCTCTTTCGCTTTTGAAGTTCTTTCGCTCACACGACTGATTTGATTGTTATCGGCTTCCAGTGTTGCATCTCAACTCATAGAAGTGAGGATGAATTCAGGGAAGTTGATAATGGTAGAGAAATATCAACATGGGATGATGCACTGCGGAGGAGCACTCAAGAATTCCAACACCGAGCCTACAATCTCTTAACTTGCAATTGTCATTCCTTTGTTGCTAACAATCTGAACAGACTTGGGTTTGTCACAGGTGGATGGAATGTGGTAAACCTTGCTGCTCTGATGTTTCTCAAGGGTCGGTGGGTCAGTAAAGGAGCTGTGATCCGGACGTTCTTACCATTTGGTGTGGTATTCAGTATAGGAGTTGCAATGGTGGGTACTACATTCCTAACTTTCTTGGCATTCTTCACTTTCTTCCTGGTTGGTTGGTTCGTTCTTGGTACTTATGTCTTCAAAAATTTGGTTCAGTTGTAATGTTTCTACAGTTCCTACAAATTGGATTCTCAAAAGTTCTAATGGGTCTAAGAGATATTTTCACACCATTATAAAGAAAGTTTTGTTCGATACGTTATCTTACAGAAGATTCATGCAATCTTGGAAAAATCCTCCTTAGTTTTGTGTATAGCTTTGGATAGACGCATGTTTGGTTTCTTTGTTTTTGTTCTTTCTTCCACTAACACAATTTTCTTTGGAATTTTAGGAAATAAAGCTGGAAAATTAAATGACCATAATTATTAGGAATATATATATTTTTAAAATAAAATGTATCCCCGTCAATCAAGCTTGGAATATGCCAATCCCAAATTGGAAGTGCCCACAGAATTTTGTAACGTTGAATTATTAAATTAAATAAATTTCATATTTATTTTATTACACTTTTAATTTAAATATTAAACTAAATTAAAATGATTGTTTTATTAACATTTTTTGAACACATAAGCATAGTATTTCAATATTGCTGGATAAATGAAGTCCAACGTGTTCGTTGACAACAAACAACGCACGGGAAACAAAATCAGTTTCTTTAAGTATGTCGAATAAATATCTTTTTCGTGTAGAAATTGAGAATTTGAAAAGATGGAGGACCAAAATGAAAATATAGGGTTTTTTTTTTTCTAATTTAGAAAGGTGGTAATTTTAAAAGGAAAAAAGGAAGATATTTTTAAAAAAACGAAAAAAGAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGGGAAGTAAATGGGAATGGAATAGGGTGCAGAGGAAGAGTGGGGAGTGGCGTTATAAGGCGTGGCCGGTCCACTTCGTCCCTTTCGTCAACATCATCGTCACATTTCGCATTAACTCTTTTCCTCCCTTTCTCTCTGCCATTGCGGAGCCAAACCCAAGCATGACCAGCTCCTCCGACTCCGCTCGTAAGGTTGTCCCTTTTCTTCTTCCTCATAATCATCTTTATTCTCATCGCCATCGCCATCGCCGTGTTTCATTCATCAATTTACTCTCATCTGATTCTGCTCTCCTAACTCTTCCTTTCGTATCTGATTTGATTCCTTTTCCAGGCTTTAAGTAAGATTGCTTGCAATCGGCTTCAGAAGGAACTGGTCGAGTGGCAGGTTAACCCTCCCGCTGGTTTTAAACACAAGGTTACCGATAATCTCCAGAGGTATTGCTTCTTCCCCTTTTCTCGTAGGGTTTTCTTTAATTCGTAATTTCTGTTTATTTGCCTTCTACGTCATTGTTAGCGCTCTGGAAAGTAAGAAAAAGGCTGGAATTTGATGTAATAGCGTCGAATTGGTGTTGTTGGGTGCCTTGGGGCTTAGTTTAGGTTTGATTGTGTCGTGCTCTCCCTATTATCGACAGTGGAGGTTCTTAATTTTTCTTTTGAAATCGAAGTGAGGTTTTCTTGTTACTGTTCTTTGTCTGTAGTGTGTTCTGAAAGGAAATTTACTATCTGCTTTTAGTAGGAATTTGACGTTCATTTTTGGATTTATTTTATTTTATTTTGTTGGAAGATGGGTGATTGAAGTCAACGGAGCTCCGGGAACTCTCTATGCAAATGAAACCTACCAGCTTCAGGTGGACTTCCCTGAGCATTACCCAATGGAAGCCCCACAGGTGTATAAACATAATCATTGAATTCTGAGATCATTTCTTCCATAATCCTGTGTAGTGTCTAAATTTATTGATTGTTGTGTGTTTGATTTTGTATACCGGTTTCATAACAGGTTATATTTCTGCATCCAGCCCCTCTTCATCCTCATATCTATAGCAATGGTCACATTTGTCTAGGTTGGTATATGCATAATTTTCTATTGCTTGTTCTTGTTGGATATTCTTTTCTTTGTGTGTATAGATTTCTTTGTGGTTATATCGTTTGCTTCACCATTTCACTCTATTTATGAGATTGCAATTATGCAGGAATATAAAGTTTATATTCTATTGCCTTCTTCACTCTATTGTTTTTAGATTTTTTTTTTCCATCTACCCTGTTTAAGCCTAATGCGGTCTATAAGGAGTTTTGTTTTTAGTATTTGTGTCAGGGGTCACACTTCAGATGGATGTACAATAATAGTAATGGTGTTTAATTGAATTCGACCCAAGAAGATATCTCAATTGGGGATGTTAATAGATTTTTTACCATACAGTGGCACGTTGCGTGTAAGCTTATCAGTGGTTCATCATGGAGAACCTGAATGATTTAATGTTACAGAAAGGTTTTGATATATATTCTGTCCTATTAGGACAACGTGTTGCTTACATCTATTATGTTTAAAACTTTTCAATTACACAAAATAGAAGTATAAACTAGTCTTGCAATGAAAAATAAAAGAAAAAGAAGAGGAAGTACTGCTTGATATTGGATTCCGTTCTTTTTGTTAATAGCTAGTTTGTATGGATGAAAAGATCCTCTATGCTGAAAAGTTATTGCAGGATGAGTGTTTATCATGGTATTTACTAGGTGTTCATTGGTCGGGTTTGTTTTGAAATCTTTCAACCATTTGGTTATATGTCTATATATGTAATGAATAAGAACAGAACCATACTGCTCAACACTAACATCCAAAACAATACCAATTCATCCATCAATATGTTTCTTTGTATCATTCGTAACTTCTTTCTACTGTTTGGGAAACTTTTGTTTACCCTCCGCCGAATGTTATGTTTGCTGATTGAAATGAAATATAAATACCATAAAGTTCATCAAATCTGCAAAATGAATAAAACTAATTTCTATTACATGTTAGATTGTAATTGTTTTATAACCGAAGTCTTTAAAACTTGACTTAAGATTTTACAGGGCATTATTAATCATGTAATATTTTAAATTATTTAGGTGTAAATATTCGTTTATTTTAGCAATCTAAGTTTTATTAATCTTTTTCGTTTGGTTTGCTTTAGACAGAAATTTGTCAAGCTGAACCAAACTATCATTGCTGGTTTTGTTTGGTCTGAACAAAAGGAAAGGAATCTCAAACCAAGCTAATTTAGTTTGGATCATTGGTTTGGTCTTGAACACCTCTATCATTTGCAATGGATGTAGTTTGAAGGTGAAGTTGGAAATATGCTTGCTGCAACTTGCTAGTTGCTCAGATGCACATTACCTGCGAGATTGAGATGATGTGTTTTCTAATAATTTAATATGTTGGTGTTAAAGTTTTGTCTTGCCTTTTCCTCTCGTACATGTTTCTAACTATCGATACTGTTTGTTGCTCGTGCTTGTTTGAGTTTTGAATTCTATCCTAGTCGTGTATATCTATTGTATGGCTTTATTTATGGTCTATTATTGGCTTTGTCTGAGTCCTTAGTTATCACCTTCATACCAACACTGACCATTGTTATTTCCCTTCACTCTGAAACCGTGTAGATATTTTATATGATTCATGGTCGCCTGCAATGACTGTAAGTTCTATCTGTATCAGCATTCTCTCCATGTTGTCGAGCTCGACAGCAAAGGTCTGTTACACTTCATGCCACTTTGATCCTATTGTATAATTAATATGTTTTTCATGGAGGTGCTGGTAATGAAATTGTTAAGCTATAACTTGTAAGGACGTGTTGTGTGTACTAACTTCAACCAGAATCCTTCTCTGACAGTCTAATGTTTTCCATTGCAGCAACGCCCTGACGATAACGACCGTTATGTAAAGAATTGTAGGAATGGAAGATCCCCGAAAGAGACGAGGTGGTGGTTCCATGACGATAAGGTGTAACAACGTAAGATCTTCCATTGTTATGCCTGTGGCTTCCCTTGTTTGTAAGGTGAAAGAAGTAGAAAGTGATTATGGAAAAAGAAAACCAAGTAAAGTGGTAAGGCCTGGCATTTGTAAAGGAAGATCAATTTATGTTTCTTACTAATGTCTAAAGAACAACTTCTCTTGTCCTTTCTTGGAGGTGGGTTATCCTTCCTGGATGAGAACCTCTTCTTAACAAATTTATAAATCATCAGTAATGCCTCCTTCCTATTACATCACACTGTGTCTTTATATAGTTTCAGTGAATATTACGATTTTTTTATAAATAAATCTTCATTGGTCGTAAATTTCAAATACTTAA

mRNA sequence

ATAATCAGAGCATAGAGAAAGGGAAAGGGCTCAGAGAAGAAAAACAGCAACAGCAACAGCAAGAGGAGGAAGAAGCAGCAGCAGCAGCATATGAGTGGATATGGGACTTTTGTGGTGTATTTAAGTTAGCACTTCGCCCCTTCCCCCCACTGCGCAACAAAGCTCATGGCGGCGTTGCAGACTTCACTTCAGTTTTAGACAGAGAGAGAAAAATACCCTTTAATGTATTAGAGAGACAGAGAGACAGAGAGAGACAGAGAGATTTCAGAATCTGATTCCCAATTCGACCTCTTTTCTACCTTCCCCCCTTTTTTTTTTCTCTTGTAGTACGAAGAATTTGATTAAGAATTTCGAGAATTTGAGAAGGAATAGTATCTCCGGTGGAAATATGGCCGGTTTTTTCCCACTAGGCGGCGGAAGAGAACCCAATTATCACCTTCCCACCACCACCACCACCACCACGGACGGATTATTTTGGTACAGAAATTATGAGAGCCTTGGAATTTGGCAGCAACAGCAGGTGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCGGGCGATGAATCGCCTCCAAGATCGTCGTTGGTGATGCTGAGATCCGGCAGAAACGGGGGAGGGCAAGTAATAAGCTGCCAAGATTGTGGAAATCAAGCCAAAAAGGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGTCGTGGCTTTGACTGTGAAACCCACGTCAAAAGTACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGACACCTCCGCAGCGACGGCACTAATCTCAAACGACCTCGAGACAACACCGCCGCTTCCTCAGGGTTAGAAATGAGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTGCGAATGACAACGTTGGACGAAACCAACGACCAATTTGCTTACCAAACAGCCGTCAACATCGGAGGCCATACCTTCAAGGGCATTCTTTACGACCACGGCCCTGAACAACAACAACAACCACCACCACCACCACCCAACTCCGCCTCCCCCGACGGTGGCGCCCTCCTCATCACCGCCCCCTCCACCACCATGGAATTGCCACCCATCAGCGCCGCATTGCTCGATCCTCCTCCGCCGTACCCAGCTCCTCTGAACACCTACGTCGCCGCCGTGTACCAGAGATGCCTCAAAGTGCAATTCAATGTGTCTGTAGGTAGCAGATTTCAGAGCTTTTCAATTCCAAAATCTTCAAGATCTTTCAAATTTGGGCTTGTGGGCGGCGGAAGAGTCGTCGCCGGCAGTGGATACGTCTTGGTCGTTCACACGATCTTTCTTCACCAAAATTGTTCCGATAGGAAGCATCTTATAACTCTGGAAATGGGATCAAGTAATGACCCTGAGAATCAAATGATGATAGAAGGAAATGTTGTTCAGAAAATGAAAATTGATCCGGAGAGAGCTCGGTTTCCATGTTGCATTGTGTGGACACCTCTTCCTGTTATTTCCTGGCTCATTCCTTTCATTGGTCACATTGGTATTGGCAGAGAGGATGGAGTGATCTTGGACTTTGCAGGCCCCAATTTTGTTTGCGTGGACAACTTCACATTTGGAGCAGTCGCACGGTATCTTCAAATCAACACAGACAAGTGTTGCATCTCAACTCATAGAAGTGAGGATGAATTCAGGGAAGTTGATAATGGTAGAGAAATATCAACATGGGATGATGCACTGCGGAGGAGCACTCAAGAATTCCAACACCGAGCCTACAATCTCTTAACTTGCAATTGTCATTCCTTTGTTGCTAACAATCTGAACAGACTTGGGTTTGTCACAGGTGGATGGAATGTGGTAAACCTTGCTGCTCTGATGTTTCTCAAGGGTCGGTGGGTCAGTAAAGGAGCTGTGATCCGGACGTTCTTACCATTTGGTGTGGTATTCAGTATAGGAGTTGCAATGGTGGGTACTACATTCCTAACTTTCTTGGCATTCTTCACTTTCTTCCTGGTTGGTTGGTTCGTTCTTGGTACTTATGTCTTCAAAAATTTGGTTCAGTTGGTGCAGAGGAAGAGTGGGGAGTGGCGTTATAAGGCGTGGCCGGTCCACTTCGTCCCTTTCGTCAACATCATCGTCACATTTCGCATTAACTCTTTTCCTCCCTTTCTCTCTGCCATTGCGGAGCCAAACCCAAGCATGACCAGCTCCTCCGACTCCGCTCGTAAGGCTTTAAGTAAGATTGCTTGCAATCGGCTTCAGAAGGAACTGGTCGAGTGGCAGGTTAACCCTCCCGCTGGTTTTAAACACAAGGTTACCGATAATCTCCAGAGATGGGTGATTGAAGTCAACGGAGCTCCGGGAACTCTCTATGCAAATGAAACCTACCAGCTTCAGGTGGACTTCCCTGAGCATTACCCAATGGAAGCCCCACAGGTTATATTTCTGCATCCAGCCCCTCTTCATCCTCATATCTATAGCAATGGTCACATTTGTCTAGATATTTTATATGATTCATGGTCGCCTGCAATGACTGTAAGTTCTATCTGTATCAGCATTCTCTCCATGTTGTCGAGCTCGACAGCAAAGCAACGCCCTGACGATAACGACCGTTATGTAAAGAATTGTAGGAATGGAAGATCCCCGAAAGAGACGAGGTGGTGGTTCCATGACGATAAGGTGTAACAACGTAAGATCTTCCATTGTTATGCCTGTGGCTTCCCTTGTTTGTAAGGTGAAAGAAGTAGAAAGTGATTATGGAAAAAGAAAACCAAGTAAAGTGGTAAGGCCTGGCATTTGTAAAGGAAGATCAATTTATGTTTCTTACTAATGTCTAAAGAACAACTTCTCTTGTCCTTTCTTGGAGGTGGGTTATCCTTCCTGGATGAGAACCTCTTCTTAACAAATTTATAAATCATCAGTAATGCCTCCTTCCTATTACATCACACTGTGTCTTTATATAGTTTCAGTGAATATTACGATTTTTTTATAAATAAATCTTCATTGGTCGTAAATTTCAAATACTTAA

Coding sequence (CDS)

ATGGCCGGTTTTTTCCCACTAGGCGGCGGAAGAGAACCCAATTATCACCTTCCCACCACCACCACCACCACCACGGACGGATTATTTTGGTACAGAAATTATGAGAGCCTTGGAATTTGGCAGCAACAGCAGGTGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCGGGCGATGAATCGCCTCCAAGATCGTCGTTGGTGATGCTGAGATCCGGCAGAAACGGGGGAGGGCAAGTAATAAGCTGCCAAGATTGTGGAAATCAAGCCAAAAAGGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGTCGTGGCTTTGACTGTGAAACCCACGTCAAAAGTACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGACACCTCCGCAGCGACGGCACTAATCTCAAACGACCTCGAGACAACACCGCCGCTTCCTCAGGGTTAGAAATGAGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTGCGAATGACAACGTTGGACGAAACCAACGACCAATTTGCTTACCAAACAGCCGTCAACATCGGAGGCCATACCTTCAAGGGCATTCTTTACGACCACGGCCCTGAACAACAACAACAACCACCACCACCACCACCCAACTCCGCCTCCCCCGACGGTGGCGCCCTCCTCATCACCGCCCCCTCCACCACCATGGAATTGCCACCCATCAGCGCCGCATTGCTCGATCCTCCTCCGCCGTACCCAGCTCCTCTGAACACCTACGTCGCCGCCGTGTACCAGAGATGCCTCAAAGTGCAATTCAATGTGTCTGTAGGTAGCAGATTTCAGAGCTTTTCAATTCCAAAATCTTCAAGATCTTTCAAATTTGGGCTTGTGGGCGGCGGAAGAGTCGTCGCCGGCAGTGGATACGTCTTGGTCGTTCACACGATCTTTCTTCACCAAAATTGTTCCGATAGGAAGCATCTTATAACTCTGGAAATGGGATCAAGTAATGACCCTGAGAATCAAATGATGATAGAAGGAAATGTTGTTCAGAAAATGAAAATTGATCCGGAGAGAGCTCGGTTTCCATGTTGCATTGTGTGGACACCTCTTCCTGTTATTTCCTGGCTCATTCCTTTCATTGGTCACATTGGTATTGGCAGAGAGGATGGAGTGATCTTGGACTTTGCAGGCCCCAATTTTGTTTGCGTGGACAACTTCACATTTGGAGCAGTCGCACGGTATCTTCAAATCAACACAGACAAGTGTTGCATCTCAACTCATAGAAGTGAGGATGAATTCAGGGAAGTTGATAATGGTAGAGAAATATCAACATGGGATGATGCACTGCGGAGGAGCACTCAAGAATTCCAACACCGAGCCTACAATCTCTTAACTTGCAATTGTCATTCCTTTGTTGCTAACAATCTGAACAGACTTGGGTTTGTCACAGGTGGATGGAATGTGGTAAACCTTGCTGCTCTGATGTTTCTCAAGGGTCGGTGGGTCAGTAAAGGAGCTGTGATCCGGACGTTCTTACCATTTGGTGTGGTATTCAGTATAGGAGTTGCAATGGTGGGTACTACATTCCTAACTTTCTTGGCATTCTTCACTTTCTTCCTGGTTGGTTGGTTCGTTCTTGGTACTTATGTCTTCAAAAATTTGGTTCAGTTGGTGCAGAGGAAGAGTGGGGAGTGGCGTTATAAGGCGTGGCCGGTCCACTTCGTCCCTTTCGTCAACATCATCGTCACATTTCGCATTAACTCTTTTCCTCCCTTTCTCTCTGCCATTGCGGAGCCAAACCCAAGCATGACCAGCTCCTCCGACTCCGCTCGTAAGGCTTTAAGTAAGATTGCTTGCAATCGGCTTCAGAAGGAACTGGTCGAGTGGCAGGTTAACCCTCCCGCTGGTTTTAAACACAAGGTTACCGATAATCTCCAGAGATGGGTGATTGAAGTCAACGGAGCTCCGGGAACTCTCTATGCAAATGAAACCTACCAGCTTCAGGTGGACTTCCCTGAGCATTACCCAATGGAAGCCCCACAGGTTATATTTCTGCATCCAGCCCCTCTTCATCCTCATATCTATAGCAATGGTCACATTTGTCTAGATATTTTATATGATTCATGGTCGCCTGCAATGACTGTAAGTTCTATCTGTATCAGCATTCTCTCCATGTTGTCGAGCTCGACAGCAAAGCAACGCCCTGACGATAACGACCGTTATGTAAAGAATTGTAGGAATGGAAGATCCCCGAAAGAGACGAGGTGGTGGTTCCATGACGATAAGGTGTAA

Protein sequence

MAGFFPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDESPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPNSASPDGGALLITAPSTTMELPPISAALLDPPPPYPAPLNTYVAAVYQRCLKVQFNVSVGSRFQSFSIPKSSRSFKFGLVGGGRVVAGSGYVLVVHTIFLHQNCSDRKHLITLEMGSSNDPENQMMIEGNVVQKMKIDPERARFPCCIVWTPLPVISWLIPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVARYLQINTDKCCISTHRSEDEFREVDNGREISTWDDALRRSTQEFQHRAYNLLTCNCHSFVANNLNRLGFVTGGWNVVNLAALMFLKGRWVSKGAVIRTFLPFGVVFSIGVAMVGTTFLTFLAFFTFFLVGWFVLGTYVFKNLVQLVQRKSGEWRYKAWPVHFVPFVNIIVTFRINSFPPFLSAIAEPNPSMTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV

Homology

[Close]

BLAST of CmoCh04G008220 vs. ExPASy Swiss-Prot
Match: Q9FWT2 (Probable ubiquitin-conjugating enzyme E2 16 OS=Arabidopsis thaliana OX=3702 GN=UBC16 PE=2 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.4e-83
Identity = 145/161 (90.06%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 597 MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 656
           M+SS   +RK LSKIA NRLQKELVEWQ+NPP GFKHKVTDNLQRW+IEV GAPGTLYAN
Sbjct: 1   MSSSGAPSRKTLSKIATNRLQKELVEWQMNPPTGFKHKVTDNLQRWIIEVIGAPGTLYAN 60

Query: 657 ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 716
           +TYQLQVDFPEHYPME+PQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  DTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 717 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 758
           LSMLSSST KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSTEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161

[Close]

BLAST of CmoCh04G008220 vs. ExPASy Swiss-Prot
Match: Q9FMM0 (Probable ubiquitin-conjugating enzyme E2 18 OS=Arabidopsis thaliana OX=3702 GN=UBC18 PE=2 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.6e-82
Identity = 143/161 (88.82%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 597 MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 656
           MTSSS  +RKALSKIACNRLQKEL EWQVNPP GFKH+VTDNLQ+WVIEV GAPGTLYAN
Sbjct: 1   MTSSSSPSRKALSKIACNRLQKELSEWQVNPPTGFKHRVTDNLQKWVIEVTGAPGTLYAN 60

Query: 657 ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 716
           ETY LQV+FP+HYPMEAPQVIF+ PAPLHPHIYSNGHICLDILYDSWSPAMTVSS+CISI
Sbjct: 61  ETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISI 120

Query: 717 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 758
           LSMLSSS  KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSPEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161

[Close]

BLAST of CmoCh04G008220 vs. ExPASy Swiss-Prot
Match: P42743 (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana OX=3702 GN=UBC15 PE=2 SV=2)

HSP 1 Score: 305.4 bits (781), Expect = 1.7e-81
Identity = 140/161 (86.96%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 597 MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 656
           MTSSS  +RKALSKIACNRLQKEL EWQ+NPP GF+HKVTDNLQ+W I+V GAPGTLYAN
Sbjct: 1   MTSSSAPSRKALSKIACNRLQKELSEWQLNPPTGFRHKVTDNLQKWTIDVTGAPGTLYAN 60

Query: 657 ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 716
           ETYQLQV+FPEHYPMEAPQV+F+ PAP HPHIYSNGHICLDILYDSWSPAMTV+S+CISI
Sbjct: 61  ETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISI 120

Query: 717 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 758
           LSMLSSS AKQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSPAKQRPADNDRYVKNCKNGRSPKETRWWFHDDKV 161

[Close]

BLAST of CmoCh04G008220 vs. ExPASy Swiss-Prot
Match: O23239 (Probable ubiquitin-conjugating enzyme E2 17 OS=Arabidopsis thaliana OX=3702 GN=UBC17 PE=2 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.5e-77
Identity = 132/161 (81.99%), Postives = 149/161 (92.55%), Query Frame = 0


Query: 597 MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 656
           MTSSS+S RK L+KIA NRLQKE +EWQ NPP+GFKH+V+DNLQRW+IEV+G PGTLYAN
Sbjct: 1   MTSSSESTRKGLTKIATNRLQKEFMEWQTNPPSGFKHRVSDNLQRWIIEVHGVPGTLYAN 60

Query: 657 ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 716
           ETYQLQV+FPEHYPMEAPQVIF HPAPLHPHIYSNGHICLD+LYDSWSPAM +SSIC+SI
Sbjct: 61  ETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSI 120

Query: 717 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 758
           LSMLSSS+ KQ+P DND Y+KNC++GRSPKETRW FHDDKV
Sbjct: 121 LSMLSSSSVKQKPKDNDHYLKNCKHGRSPKETRWRFHDDKV 161

[Close]

BLAST of CmoCh04G008220 vs. ExPASy Swiss-Prot
Match: Q9SD42 (Protein RTE1-HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=RTH PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 5.1e-73
Identity = 135/233 (57.94%), Postives = 172/233 (73.82%), Query Frame = 0


Query: 328 SSNDPENQMMIEGNVVQKMKIDPERARFPCCIVWTPLPVISWLIPFIGHIGIGREDGVIL 387
           ++ D E++MMI   +   MKIDP+R RFPCCIVWTPLP ISWL+PFIGH+GI REDGVIL
Sbjct: 4   TATDSEHRMMI--GLSDPMKIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVIL 63

Query: 388 DFAGPNFVCVDNFTFGAVARYLQINTDKCCISTHRSEDE---------FREVDNGREIST 447
           DFAGPNFVCVDNF FGAV+RY+QIN +   + + RS             +E D+  +  T
Sbjct: 64  DFAGPNFVCVDNFAFGAVSRYIQINKE---MESSRSSSSGMFNGERRYEQEEDSHEKEPT 123

Query: 448 WDDALRRSTQEFQHRAYNLLTCNCHSFVANNLNRLGFVTGGWNVVNLAALMFLKGRWVSK 507
           WDDALR+STQE+QH +YN+LTCNCHSFVANNLNRL   +GGWNVVNLA L+  KGRWV+K
Sbjct: 124 WDDALRKSTQEYQHHSYNILTCNCHSFVANNLNRLSIKSGGWNVVNLATLVLFKGRWVNK 183

Query: 508 GAVIRTFLPFGVVFSIGVAMVGTTFLTFLAFFTFFLVGWFVLGTYVFKNLVQL 552
            A++++ LP  +V++IG+ + G TF+   +     L GWF++GTY FK L+QL
Sbjct: 184 TAIVKSLLPPLIVYTIGILLGGWTFIASCSILVVLLTGWFIIGTYCFKKLIQL 231

[Close]

BLAST of CmoCh04G008220 vs. ExPASy TrEMBL
Match: A0A6J1FUH1 (protein SHORT INTERNODES-like OS=Cucurbita moschata OX=3662 GN=LOC111447394 PE=3 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 9.4e-147
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MAGFFPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES 60
           MAGFFPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES
Sbjct: 1   MAGFFPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES 60

Query: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120
           PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA
Sbjct: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120

Query: 121 SKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAY 180
           SKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAY
Sbjct: 121 SKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAY 180

Query: 181 QTAVNIGGHTFKGILYDHGPEQQQQPPPPPPNSASPDGGALLITAPSTTMELPPISAALL 240
           QTAVNIGGHTFKGILYDHGPEQQQQPPPPPPNSASPDGGALLITAPSTTMELPPISAALL
Sbjct: 181 QTAVNIGGHTFKGILYDHGPEQQQQPPPPPPNSASPDGGALLITAPSTTMELPPISAALL 240

Query: 241 DPPPPYPAPLNTYVAA 257
           DPPPPYPAPLNTYVAA
Sbjct: 241 DPPPPYPAPLNTYVAA 256

[Close]

BLAST of CmoCh04G008220 vs. ExPASy TrEMBL
Match: A0A6J1J480 (protein SHI RELATED SEQUENCE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481193 PE=3 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 6.5e-140
Identity = 249/256 (97.27%), Postives = 251/256 (98.05%), Query Frame = 0


Query: 1   MAGFFPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES 60
           MAGFFPLGGGREPNYHLP  TTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES
Sbjct: 1   MAGFFPLGGGREPNYHLP--TTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES 60

Query: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120
           PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA
Sbjct: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120

Query: 121 SKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAY 180
           SKRRERHLRSD TNLKRPRDNTAASSGLEM NFP+EVSSTAVFRCVRMTTLDETNDQFAY
Sbjct: 121 SKRRERHLRSDATNLKRPRDNTAASSGLEMGNFPMEVSSTAVFRCVRMTTLDETNDQFAY 180

Query: 181 QTAVNIGGHTFKGILYDHGPEQQQQPPPPPPNSASPDGGALLITAPSTTMELPPISAALL 240
           QTAVNIGGHTFKGILYDHGPEQQQQ PPPPPNSASPDGGALLITAP+TTMELPPISAALL
Sbjct: 181 QTAVNIGGHTFKGILYDHGPEQQQQ-PPPPPNSASPDGGALLITAPTTTMELPPISAALL 240

Query: 241 DPPPPYPAPLNTYVAA 257
           DPPPPYPAPLNTYVAA
Sbjct: 241 DPPPPYPAPLNTYVAA 253

[Close]

BLAST of CmoCh04G008220 vs. ExPASy TrEMBL
Match: A0A6J1FW19 (protein RTE1-HOMOLOG-like OS=Cucurbita moschata OX=3662 GN=LOC111447395 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 8.2e-127
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 326 MGSSNDPENQMMIEGNVVQKMKIDPERARFPCCIVWTPLPVISWLIPFIGHIGIGREDGV 385
           MGSSNDPENQMMIEGNVVQKMKIDPERARFPCCIVWTPLPVISWLIPFIGHIGIGREDGV
Sbjct: 1   MGSSNDPENQMMIEGNVVQKMKIDPERARFPCCIVWTPLPVISWLIPFIGHIGIGREDGV 60

Query: 386 ILDFAGPNFVCVDNFTFGAVARYLQINTDKCCISTHRSEDEFREVDNGREISTWDDALRR 445
           ILDFAGPNFVCVDNFTFGAVARYLQINTDKCCISTHRSEDEFREVDNGREISTWDDALRR
Sbjct: 61  ILDFAGPNFVCVDNFTFGAVARYLQINTDKCCISTHRSEDEFREVDNGREISTWDDALRR 120

Query: 446 STQEFQHRAYNLLTCNCHSFVANNLNRLGFVTGGWNVVNLAALMFLKGRWVSKGAVIRTF 505
           STQEFQHRAYNLLTCNCHSFVANNLNRLGFVTGGWNVVNLAALMFLKGRWVSKGAVIRTF
Sbjct: 121 STQEFQHRAYNLLTCNCHSFVANNLNRLGFVTGGWNVVNLAALMFLKGRWVSKGAVIRTF 180

Query: 506 LPFGVVFSIGVAMVGTTFLTFLAFFTFFLVGWFVLGTYVFKNLVQL 552
           LPFGVVFSIGVAMVGTTFLTFLAFFTFFLVGWFVLGTYVFKNLVQL
Sbjct: 181 LPFGVVFSIGVAMVGTTFLTFLAFFTFFLVGWFVLGTYVFKNLVQL 226

[Close]

BLAST of CmoCh04G008220 vs. ExPASy TrEMBL
Match: A0A6J1J2Z1 (protein RTE1-HOMOLOG-like OS=Cucurbita maxima OX=3661 GN=LOC111481385 PE=4 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 1.9e-123
Identity = 221/226 (97.79%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 326 MGSSNDPENQMMIEGNVVQKMKIDPERARFPCCIVWTPLPVISWLIPFIGHIGIGREDGV 385
           MGSSNDPENQMMIEGNVVQ+MKIDPE ARFPCCIVWTPLPVISWLIPFIGHIGIGREDGV
Sbjct: 1   MGSSNDPENQMMIEGNVVQEMKIDPESARFPCCIVWTPLPVISWLIPFIGHIGIGREDGV 60

Query: 386 ILDFAGPNFVCVDNFTFGAVARYLQINTDKCCISTHRSEDEFREVDNGREISTWDDALRR 445
           ILDFA PNFVCVDNFTFGAVARYLQINTDKCCISTHRSEDEFREVDNGREISTWDDALRR
Sbjct: 61  ILDFADPNFVCVDNFTFGAVARYLQINTDKCCISTHRSEDEFREVDNGREISTWDDALRR 120

Query: 446 STQEFQHRAYNLLTCNCHSFVANNLNRLGFVTGGWNVVNLAALMFLKGRWVSKGAVIRTF 505
           STQEFQHR YNLLTCNCHSFVANNLNRLGFVTGGWNVVNLAALMFLKGRWVSKGAVIRTF
Sbjct: 121 STQEFQHRPYNLLTCNCHSFVANNLNRLGFVTGGWNVVNLAALMFLKGRWVSKGAVIRTF 180

Query: 506 LPFGVVFSIGVAMVGTTFLTFLAFFTFFLVGWFVLGTYVFKNLVQL 552
           LPFGVVFSIGVAM GTTFLTFLAFFTFFLVGWFVLGTYVFKNLVQL
Sbjct: 181 LPFGVVFSIGVAMGGTTFLTFLAFFTFFLVGWFVLGTYVFKNLVQL 226

[Close]

BLAST of CmoCh04G008220 vs. ExPASy TrEMBL
Match: A0A0A0KXZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G044470 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 2.3e-116
Identity = 207/230 (90.00%), Postives = 218/230 (94.78%), Query Frame = 0


Query: 322 ITLEMGSSNDPENQMMIEGNVVQKMKIDPERARFPCCIVWTPLPVISWLIPFIGHIGIGR 381
           ++LEM SS DPENQ+MIEGN+ Q MKIDPERARFPCCIVWTPLPVISWL+PFIGHIGIGR
Sbjct: 1   MSLEMESSKDPENQLMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGR 60

Query: 382 EDGVILDFAGPNFVCVDNFTFGAVARYLQINTDKCCISTHRSEDEFREVDNGREISTWDD 441
           EDGVILDFAGPNFVCVDNFTFGAVARYLQIN DKCCIS HRSE+E REVD+ REISTWDD
Sbjct: 61  EDGVILDFAGPNFVCVDNFTFGAVARYLQINRDKCCISAHRSEEELREVDHSREISTWDD 120

Query: 442 ALRRSTQEFQHRAYNLLTCNCHSFVANNLNRLGFVTGGWNVVNLAALMFLKGRWVSKGAV 501
           ALRRSTQEFQHRAYNLLTCNCHSFVANNLNRLGF TGGWNVVNLAAL+FLKGRWVSKGAV
Sbjct: 121 ALRRSTQEFQHRAYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAV 180

Query: 502 IRTFLPFGVVFSIGVAMVGTTFLTFLAFFTFFLVGWFVLGTYVFKNLVQL 552
           IRTFLPF VVFSIG+A+  TTFLTFLAFFTFFLVGWF+LGTYVFKNLVQL
Sbjct: 181 IRTFLPFVVVFSIGLALGDTTFLTFLAFFTFFLVGWFILGTYVFKNLVQL 230

[Close]

BLAST of CmoCh04G008220 vs. NCBI nr
Match: KAG6600597.1 (Protein RTE1-HOMOLOG, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1039.3 bits (2686), Expect = 1.7e-299
Identity = 517/552 (93.66%), Postives = 520/552 (94.20%), Query Frame = 0


Query: 1   MAGFFPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES 60
           MAGF+PLGGGREPNYHLPTTTTTTTDGLFWYRNYESL IWQQQQVQQQAGEGFVYSGDES
Sbjct: 1   MAGFYPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLEIWQQQQVQQQAGEGFVYSGDES 60

Query: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120
           PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA
Sbjct: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120

Query: 121 SKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAY 180
           SKRRERHLRSDGTNLKRPRDNTAASSGLEM NFPVEVSSTAVFRCVRMTTLDETNDQFAY
Sbjct: 121 SKRRERHLRSDGTNLKRPRDNTAASSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQFAY 180

Query: 181 QTAVNIGGHTFKGILYDHGPEQQQQ-PPPPPPNSASPDGGALLITAPSTTMELPPISAAL 240
           QTAVNIGGHTFKGILYDHGPEQQQQ PPPPPPNSASPDGG LLITAPSTTMELPPISAAL
Sbjct: 181 QTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGTLLITAPSTTMELPPISAAL 240

Query: 241 LDPPPPYPAPLNTYVAAVYQRCLKVQFNVSVGSRFQSFSIPKSSRSFKFGLVGGGRVVAG 300
           LDPPPPYPAPLNTYVAAVYQRCLKVQFNVSVGSR           +F+F           
Sbjct: 241 LDPPPPYPAPLNTYVAAVYQRCLKVQFNVSVGSR----------SAFRF----------- 300

Query: 301 SGYVLVVHTIFLHQNCSDRKHLITLEMGSSNDPENQMMIEGNVVQKMKIDPERARFPCCI 360
                VVHTIFLHQNCSDRKHLITLEMGSSNDPENQMMIEGNVVQKMKIDPERARFPCCI
Sbjct: 301 ----RVVHTIFLHQNCSDRKHLITLEMGSSNDPENQMMIEGNVVQKMKIDPERARFPCCI 360

Query: 361 VWTPLPVISWLIPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVARYLQINTDKCCIS 420
           VWTPLPVISWLIPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVARYLQINTDKCCIS
Sbjct: 361 VWTPLPVISWLIPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVARYLQINTDKCCIS 420

Query: 421 THRSEDEFREVDNGREISTWDDALRRSTQEFQHRAYNLLTCNCHSFVANNLNRLGFVTGG 480
           THRSEDEFREVDNGREISTWDDALRRSTQEFQHRAYNLLTCNCHSFVANNLNRLGFVTGG
Sbjct: 421 THRSEDEFREVDNGREISTWDDALRRSTQEFQHRAYNLLTCNCHSFVANNLNRLGFVTGG 480

Query: 481 WNVVNLAALMFLKGRWVSKGAVIRTFLPFGVVFSIGVAMVGTTFLTFLAFFTFFLVGWFV 540
           WNVVNLAALMFLKGRWVSKGAVIRTFLPFGVVFSIGVAM GTTFLTFLAFFTFFLVGWFV
Sbjct: 481 WNVVNLAALMFLKGRWVSKGAVIRTFLPFGVVFSIGVAMGGTTFLTFLAFFTFFLVGWFV 527

Query: 541 LGTYVFKNLVQL 552
           LGTYVFKNLVQL
Sbjct: 541 LGTYVFKNLVQL 527

[Close]

BLAST of CmoCh04G008220 vs. NCBI nr
Match: XP_022942307.1 (protein SHORT INTERNODES-like [Cucurbita moschata] >XP_022942308.1 protein SHORT INTERNODES-like [Cucurbita moschata])

HSP 1 Score: 530.8 bits (1366), Expect = 1.9e-146
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MAGFFPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES 60
           MAGFFPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES
Sbjct: 1   MAGFFPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES 60

Query: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120
           PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA
Sbjct: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120

Query: 121 SKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAY 180
           SKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAY
Sbjct: 121 SKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAY 180

Query: 181 QTAVNIGGHTFKGILYDHGPEQQQQPPPPPPNSASPDGGALLITAPSTTMELPPISAALL 240
           QTAVNIGGHTFKGILYDHGPEQQQQPPPPPPNSASPDGGALLITAPSTTMELPPISAALL
Sbjct: 181 QTAVNIGGHTFKGILYDHGPEQQQQPPPPPPNSASPDGGALLITAPSTTMELPPISAALL 240

Query: 241 DPPPPYPAPLNTYVAA 257
           DPPPPYPAPLNTYVAA
Sbjct: 241 DPPPPYPAPLNTYVAA 256

[Close]

BLAST of CmoCh04G008220 vs. NCBI nr
Match: KAG7031235.1 (Protein SHORT INTERNODES, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 517.7 bits (1332), Expect = 1.7e-142
Identity = 252/257 (98.05%), Postives = 253/257 (98.44%), Query Frame = 0


Query: 1   MAGFFPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES 60
           MAGF+PLGGGREPNYHLPTTTTTTTDGLFWYRNYESL IWQQQQVQQQAGEGFVYSGDES
Sbjct: 1   MAGFYPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLEIWQQQQVQQQAGEGFVYSGDES 60

Query: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120
           PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA
Sbjct: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120

Query: 121 SKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAY 180
           SKRRERHLRSDGTNLKRPRDNTAASSGLEM NFPVEVSSTAVFRCVRMTTLDETNDQFAY
Sbjct: 121 SKRRERHLRSDGTNLKRPRDNTAASSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQFAY 180

Query: 181 QTAVNIGGHTFKGILYDHGPEQQQQ-PPPPPPNSASPDGGALLITAPSTTMELPPISAAL 240
           QTAVNIGGHTFKGILYDHGPEQQQQ PPPPPPNSASPDGG LLITAPSTTMELPPISAAL
Sbjct: 181 QTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGTLLITAPSTTMELPPISAAL 240

Query: 241 LDPPPPYPAPLNTYVAA 257
           LDPPPPYPAPLNTYVAA
Sbjct: 241 LDPPPPYPAPLNTYVAA 257

[Close]

BLAST of CmoCh04G008220 vs. NCBI nr
Match: XP_023552309.1 (protein SHI RELATED SEQUENCE 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 513.8 bits (1322), Expect = 2.4e-141
Identity = 252/258 (97.67%), Postives = 253/258 (98.06%), Query Frame = 0


Query: 1   MAGFFPLGGGREPNYHLPTTTTTT-TDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDE 60
           MAGF+PLGGGREPNYHLPTTTTTT TDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDE
Sbjct: 1   MAGFYPLGGGREPNYHLPTTTTTTITDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDE 60

Query: 61  SPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVP 120
           SPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVP
Sbjct: 61  SPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVP 120

Query: 121 ASKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFA 180
           ASKRRERHLRSDGTNLKRPRDNTAASSGLEM N PVEVSSTAVFRCVRMTTLDETNDQFA
Sbjct: 121 ASKRRERHLRSDGTNLKRPRDNTAASSGLEMGNLPVEVSSTAVFRCVRMTTLDETNDQFA 180

Query: 181 YQTAVNIGGHTFKGILYDHGPEQQQQ-PPPPPPNSASPDGGALLITAPSTTMELPPISAA 240
           YQTAVNIGGHTFKGILYDHGPEQQQQ PPPPPPNSASPDGGALLITAPSTTMELPPIS A
Sbjct: 181 YQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGALLITAPSTTMELPPISTA 240

Query: 241 LLDPPPPYPAPLNTYVAA 257
           LLDPPPPYPAPLNTYVAA
Sbjct: 241 LLDPPPPYPAPLNTYVAA 258

[Close]

BLAST of CmoCh04G008220 vs. NCBI nr
Match: XP_022982329.1 (protein SHI RELATED SEQUENCE 1-like [Cucurbita maxima] >XP_022982338.1 protein SHI RELATED SEQUENCE 1-like [Cucurbita maxima])

HSP 1 Score: 508.1 bits (1307), Expect = 1.3e-139
Identity = 249/256 (97.27%), Postives = 251/256 (98.05%), Query Frame = 0


Query: 1   MAGFFPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES 60
           MAGFFPLGGGREPNYHLP  TTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES
Sbjct: 1   MAGFFPLGGGREPNYHLP--TTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES 60

Query: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120
           PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA
Sbjct: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120

Query: 121 SKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAY 180
           SKRRERHLRSD TNLKRPRDNTAASSGLEM NFP+EVSSTAVFRCVRMTTLDETNDQFAY
Sbjct: 121 SKRRERHLRSDATNLKRPRDNTAASSGLEMGNFPMEVSSTAVFRCVRMTTLDETNDQFAY 180

Query: 181 QTAVNIGGHTFKGILYDHGPEQQQQPPPPPPNSASPDGGALLITAPSTTMELPPISAALL 240
           QTAVNIGGHTFKGILYDHGPEQQQQ PPPPPNSASPDGGALLITAP+TTMELPPISAALL
Sbjct: 181 QTAVNIGGHTFKGILYDHGPEQQQQ-PPPPPNSASPDGGALLITAPTTTMELPPISAALL 240

Query: 241 DPPPPYPAPLNTYVAA 257
           DPPPPYPAPLNTYVAA
Sbjct: 241 DPPPPYPAPLNTYVAA 253

[Close]

BLAST of CmoCh04G008220 vs. TAIR 10
Match: AT1G75440.1 (ubiquitin-conjugating enzyme 16 )

HSP 1 Score: 311.6 bits (797), Expect = 1.7e-84
Identity = 145/161 (90.06%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 597 MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 656
           M+SS   +RK LSKIA NRLQKELVEWQ+NPP GFKHKVTDNLQRW+IEV GAPGTLYAN
Sbjct: 1   MSSSGAPSRKTLSKIATNRLQKELVEWQMNPPTGFKHKVTDNLQRWIIEVIGAPGTLYAN 60

Query: 657 ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 716
           +TYQLQVDFPEHYPME+PQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 61  DTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120

Query: 717 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 758
           LSMLSSST KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSTEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161

[Close]

BLAST of CmoCh04G008220 vs. TAIR 10
Match: AT5G42990.1 (ubiquitin-conjugating enzyme 18 )

HSP 1 Score: 308.9 bits (790), Expect = 1.1e-83
Identity = 143/161 (88.82%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 597 MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 656
           MTSSS  +RKALSKIACNRLQKEL EWQVNPP GFKH+VTDNLQ+WVIEV GAPGTLYAN
Sbjct: 1   MTSSSSPSRKALSKIACNRLQKELSEWQVNPPTGFKHRVTDNLQKWVIEVTGAPGTLYAN 60

Query: 657 ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 716
           ETY LQV+FP+HYPMEAPQVIF+ PAPLHPHIYSNGHICLDILYDSWSPAMTVSS+CISI
Sbjct: 61  ETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISI 120

Query: 717 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 758
           LSMLSSS  KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSPEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161

[Close]

BLAST of CmoCh04G008220 vs. TAIR 10
Match: AT1G45050.1 (Ubiquitin-conjugating enzyme family protein )

HSP 1 Score: 305.4 bits (781), Expect = 1.2e-82
Identity = 140/161 (86.96%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 597 MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 656
           MTSSS  +RKALSKIACNRLQKEL EWQ+NPP GF+HKVTDNLQ+W I+V GAPGTLYAN
Sbjct: 1   MTSSSAPSRKALSKIACNRLQKELSEWQLNPPTGFRHKVTDNLQKWTIDVTGAPGTLYAN 60

Query: 657 ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 716
           ETYQLQV+FPEHYPMEAPQV+F+ PAP HPHIYSNGHICLDILYDSWSPAMTV+S+CISI
Sbjct: 61  ETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISI 120

Query: 717 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 758
           LSMLSSS AKQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct: 121 LSMLSSSPAKQRPADNDRYVKNCKNGRSPKETRWWFHDDKV 161

[Close]

BLAST of CmoCh04G008220 vs. TAIR 10
Match: AT4G36410.1 (ubiquitin-conjugating enzyme 17 )

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-78
Identity = 132/161 (81.99%), Postives = 149/161 (92.55%), Query Frame = 0


Query: 597 MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 656
           MTSSS+S RK L+KIA NRLQKE +EWQ NPP+GFKH+V+DNLQRW+IEV+G PGTLYAN
Sbjct: 1   MTSSSESTRKGLTKIATNRLQKEFMEWQTNPPSGFKHRVSDNLQRWIIEVHGVPGTLYAN 60

Query: 657 ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 716
           ETYQLQV+FPEHYPMEAPQVIF HPAPLHPHIYSNGHICLD+LYDSWSPAM +SSIC+SI
Sbjct: 61  ETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSI 120

Query: 717 LSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 758
           LSMLSSS+ KQ+P DND Y+KNC++GRSPKETRW FHDDKV
Sbjct: 121 LSMLSSSSVKQKPKDNDHYLKNCKHGRSPKETRWRFHDDKV 161

[Close]

BLAST of CmoCh04G008220 vs. TAIR 10
Match: AT3G51040.1 (RTE1-homolog )

HSP 1 Score: 277.3 bits (708), Expect = 3.6e-74
Identity = 135/233 (57.94%), Postives = 172/233 (73.82%), Query Frame = 0


Query: 328 SSNDPENQMMIEGNVVQKMKIDPERARFPCCIVWTPLPVISWLIPFIGHIGIGREDGVIL 387
           ++ D E++MMI   +   MKIDP+R RFPCCIVWTPLP ISWL+PFIGH+GI REDGVIL
Sbjct: 4   TATDSEHRMMI--GLSDPMKIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVIL 63

Query: 388 DFAGPNFVCVDNFTFGAVARYLQINTDKCCISTHRSEDE---------FREVDNGREIST 447
           DFAGPNFVCVDNF FGAV+RY+QIN +   + + RS             +E D+  +  T
Sbjct: 64  DFAGPNFVCVDNFAFGAVSRYIQINKE---MESSRSSSSGMFNGERRYEQEEDSHEKEPT 123

Query: 448 WDDALRRSTQEFQHRAYNLLTCNCHSFVANNLNRLGFVTGGWNVVNLAALMFLKGRWVSK 507
           WDDALR+STQE+QH +YN+LTCNCHSFVANNLNRL   +GGWNVVNLA L+  KGRWV+K
Sbjct: 124 WDDALRKSTQEYQHHSYNILTCNCHSFVANNLNRLSIKSGGWNVVNLATLVLFKGRWVNK 183

Query: 508 GAVIRTFLPFGVVFSIGVAMVGTTFLTFLAFFTFFLVGWFVLGTYVFKNLVQL 552
            A++++ LP  +V++IG+ + G TF+   +     L GWF++GTY FK L+QL
Sbjct: 184 TAIVKSLLPPLIVYTIGILLGGWTFIASCSILVVLLTGWFIIGTYCFKKLIQL 231

The following BLAST results are available for this feature:

BLAST of CmoCh04G008220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FWT2	2.4e-83	90.06	Probable ubiquitin-conjugating enzyme E2 16 OS=Arabidopsis thaliana OX=3702 GN=U...	[more]
Q9FMM0	1.6e-82	88.82	Probable ubiquitin-conjugating enzyme E2 18 OS=Arabidopsis thaliana OX=3702 GN=U...	[more]
P42743	1.7e-81	86.96	Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana OX=3702 GN=UBC15 PE=2 SV...	[more]
O23239	1.5e-77	81.99	Probable ubiquitin-conjugating enzyme E2 17 OS=Arabidopsis thaliana OX=3702 GN=U...	[more]
Q9SD42	5.1e-73	57.94	Protein RTE1-HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=RTH PE=2 SV=1	[more]

BLAST of CmoCh04G008220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUH1	9.4e-147	100.00	protein SHORT INTERNODES-like OS=Cucurbita moschata OX=3662 GN=LOC111447394 PE=3...	[more]
A0A6J1J480	6.5e-140	97.27	protein SHI RELATED SEQUENCE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481193 ...	[more]
A0A6J1FW19	8.2e-127	100.00	protein RTE1-HOMOLOG-like OS=Cucurbita moschata OX=3662 GN=LOC111447395 PE=4 SV=...	[more]
A0A6J1J2Z1	1.9e-123	97.79	protein RTE1-HOMOLOG-like OS=Cucurbita maxima OX=3661 GN=LOC111481385 PE=4 SV=1	[more]
A0A0A0KXZ7	2.3e-116	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G044470 PE=4 SV=1	[more]

BLAST of CmoCh04G008220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600597.1	1.7e-299	93.66	Protein RTE1-HOMOLOG, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022942307.1	1.9e-146	100.00	protein SHORT INTERNODES-like [Cucurbita moschata] >XP_022942308.1 protein SHORT...	[more]
KAG7031235.1	1.7e-142	98.05	Protein SHORT INTERNODES, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023552309.1	2.4e-141	97.67	protein SHI RELATED SEQUENCE 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022982329.1	1.3e-139	97.27	protein SHI RELATED SEQUENCE 1-like [Cucurbita maxima] >XP_022982338.1 protein S...	[more]

BLAST of CmoCh04G008220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75440.1	1.7e-84	90.06	ubiquitin-conjugating enzyme 16	[more]
AT5G42990.1	1.1e-83	88.82	ubiquitin-conjugating enzyme 18	[more]
AT1G45050.1	1.2e-82	86.96	Ubiquitin-conjugating enzyme family protein	[more]
AT4G36410.1	1.1e-78	81.99	ubiquitin-conjugating enzyme 17	[more]
AT3G51040.1	3.6e-74	57.94	RTE1-homolog	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00212	ubc_7	coord: 614..757 e-value: 3.8E-47 score: 172.6
None	No IPR available	PFAM	PF05142	DUF702	coord: 80..201 e-value: 5.1E-51 score: 173.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..146
None	No IPR available	PANTHER	PTHR20921:SF5	SUBFAMILY NOT NAMED	coord: 302..551
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 153..200 e-value: 1.0E-22 score: 77.8
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 81..123 e-value: 1.6E-27 score: 93.2
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 615..750 e-value: 1.0E-36 score: 125.6
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBC_2	coord: 611..757 score: 40.575031
IPR000608	Ubiquitin-conjugating enzyme E2	CDD	cd00195	UBCc	coord: 613..713 e-value: 6.7624E-35 score: 127.318
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10	Ubiquitin Conjugating Enzyme	coord: 611..757 e-value: 3.3E-46 score: 158.6
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 602..737
IPR008496	TMEM222/RTE1	PFAM	PF05608	DUF778	coord: 421..495 e-value: 6.8E-18 score: 65.7 coord: 364..413 e-value: 1.2E-19 score: 71.4
IPR008496	TMEM222/RTE1	PANTHER	PTHR20921	UNCHARACTERIZED	coord: 302..551
IPR023313	Ubiquitin-conjugating enzyme, active site	PROSITE	PS00183	UBC_1	coord: 684..699

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G008220.1	CmoCh04G008220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0010104	regulation of ethylene-activated signaling pathway
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus