CmoCh04G008180 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G008180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionAAA-ATPase At5g17760-like
LocationCmo_Chr04: 4074409 .. 4074630 (-)
RNA-Seq ExpressionCmoCh04G008180
SyntenyCmoCh04G008180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGCGAGGACGCTGAGGTGTCCCTTCAGTGCGTGGTTAAGCTGCTGAAGAGGAAGAAGCTGGAAGAGGAAAAGAATGGTAATGGCGAAGAAGGAGAAGAAGATAAGGTGAGAGCGGCGAAGAGATTGAAAGTTCTGGCGAAGAAGAAGGTGGCGGGAATGGTTACGAGAAGGAAGTTTGTCAGAAGGAATTTGTCAGAGGCTGAGATTAATTTCTAA

mRNA sequence

ATGAAGAGCGAGGACGCTGAGGTGTCCCTTCAGTGCGTGGTTAAGCTGCTGAAGAGGAAGAAGCTGGAAGAGGAAAAGAATGGTAATGGCGAAGAAGGAGAAGAAGATAAGGTGAGAGCGGCGAAGAGATTGAAAGTTCTGGCGAAGAAGAAGGTGGCGGGAATGGTTACGAGAAGGAAGTTTGTCAGAAGGAATTTGTCAGAGGCTGAGATTAATTTCTAA

Coding sequence (CDS)

ATGAAGAGCGAGGACGCTGAGGTGTCCCTTCAGTGCGTGGTTAAGCTGCTGAAGAGGAAGAAGCTGGAAGAGGAAAAGAATGGTAATGGCGAAGAAGGAGAAGAAGATAAGGTGAGAGCGGCGAAGAGATTGAAAGTTCTGGCGAAGAAGAAGGTGGCGGGAATGGTTACGAGAAGGAAGTTTGTCAGAAGGAATTTGTCAGAGGCTGAGATTAATTTCTAA

Protein sequence

MKSEDAEVSLQCVVKLLKRKKLEEEKNGNGEEGEEDKVRAAKRLKVLAKKKVAGMVTRRKFVRRNLSEAEINF
Homology
BLAST of CmoCh04G008180 vs. ExPASy TrEMBL
Match: A0A6J1FWA7 (AAA-ATPase At5g17760-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447916 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.0e-21
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 1   MKSEDAEVSLQCVVKLLKRKKLEEEKNGNG----EEGEEDKVRAAKRLKVLAKKKVAGMV 60
           MKSEDAEVSLQCVVKLLKRKKLEEE+NGNG    EEGEEDKVRAAKRLKVLAKKKVAGMV
Sbjct: 428 MKSEDAEVSLQCVVKLLKRKKLEEEENGNGEEEEEEGEEDKVRAAKRLKVLAKKKVAGMV 487

Query: 61  TRRKFVRR 65
           TRRKFVRR
Sbjct: 488 TRRKFVRR 495

BLAST of CmoCh04G008180 vs. ExPASy TrEMBL
Match: A0A6J1FT76 (AAA-ATPase At5g17760-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447916 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.5e-21
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 1   MKSEDAEVSLQCVVKLLKRKKLEEEKNGNG----EEGEEDKVRAAKRLKVLAKKKVAGMV 60
           MKSEDAEVSLQCVVKLLKRKKLEEE+NGNG    EEGEEDKVRAAKRLKVLAKKKVAGMV
Sbjct: 428 MKSEDAEVSLQCVVKLLKRKKLEEEENGNGEEEEEEGEEDKVRAAKRLKVLAKKKVAGMV 487

Query: 61  TRRKFVRR 65
           TRRKF+RR
Sbjct: 488 TRRKFIRR 495

BLAST of CmoCh04G008180 vs. ExPASy TrEMBL
Match: A0A6J1FWA9 (AAA-ATPase At5g17760-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111447916 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.9e-19
Identity = 56/64 (87.50%), Postives = 58/64 (90.62%), Query Frame = 0

Query: 1   MKSEDAEVSLQCVVKLLKRKKLEEEKNGNGEEGEEDKVRAAKRLKVLAKKKVAGMVTRRK 60
           MKSEDAEVSLQCVVKLLKRKKLEEE+NGNGEE EE KVR  KRLKV AKKKV GMVTRRK
Sbjct: 428 MKSEDAEVSLQCVVKLLKRKKLEEEENGNGEEEEEGKVRGTKRLKVQAKKKVTGMVTRRK 487

Query: 61  FVRR 65
           F+RR
Sbjct: 488 FIRR 491

BLAST of CmoCh04G008180 vs. ExPASy TrEMBL
Match: A0A6J1FQQ5 (AAA-ATPase At5g17760-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111447916 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 56/64 (87.50%), Postives = 58/64 (90.62%), Query Frame = 0

Query: 1   MKSEDAEVSLQCVVKLLKRKKLEEEKNGNGEEGEEDKVRAAKRLKVLAKKKVAGMVTRRK 60
           MKSEDAEVSLQCVVKLLKRKKLEEE+NGNGEE EE KVR  KRLKV AKKK AGMVTRRK
Sbjct: 428 MKSEDAEVSLQCVVKLLKRKKLEEEENGNGEEEEEGKVRGTKRLKVQAKKKAAGMVTRRK 487

Query: 61  FVRR 65
           F+RR
Sbjct: 488 FMRR 491

BLAST of CmoCh04G008180 vs. ExPASy TrEMBL
Match: A0A6J1IZ91 (AAA-ATPase At5g17760-like OS=Cucurbita maxima OX=3661 GN=LOC111479789 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 1   MKSEDAEVSLQCVVKLLKRKKLEEEKNGNGEEGEED----KVRAAKRLKVLAKKKVAGMV 60
           MKSEDAEVSLQCVVKLLKRKKLEEE+NGNGEE EE+    K+RAAKRLKV  KKKVAGMV
Sbjct: 428 MKSEDAEVSLQCVVKLLKRKKLEEEENGNGEEEEEEEEKGKLRAAKRLKVQPKKKVAGMV 487

Query: 61  TRRKFVRR 65
           TRRKF+RR
Sbjct: 488 TRRKFLRR 495

BLAST of CmoCh04G008180 vs. NCBI nr
Match: XP_022943068.1 (AAA-ATPase At5g17760-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 1   MKSEDAEVSLQCVVKLLKRKKLEEEKNGNG----EEGEEDKVRAAKRLKVLAKKKVAGMV 60
           MKSEDAEVSLQCVVKLLKRKKLEEE+NGNG    EEGEEDKVRAAKRLKVLAKKKVAGMV
Sbjct: 428 MKSEDAEVSLQCVVKLLKRKKLEEEENGNGEEEEEEGEEDKVRAAKRLKVLAKKKVAGMV 487

Query: 61  TRRKFVRR 65
           TRRKFVRR
Sbjct: 488 TRRKFVRR 495

BLAST of CmoCh04G008180 vs. NCBI nr
Match: XP_022943069.1 (AAA-ATPase At5g17760-like isoform X2 [Cucurbita moschata] >XP_022943070.1 AAA-ATPase At5g17760-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 1   MKSEDAEVSLQCVVKLLKRKKLEEEKNGNG----EEGEEDKVRAAKRLKVLAKKKVAGMV 60
           MKSEDAEVSLQCVVKLLKRKKLEEE+NGNG    EEGEEDKVRAAKRLKVLAKKKVAGMV
Sbjct: 428 MKSEDAEVSLQCVVKLLKRKKLEEEENGNGEEEEEEGEEDKVRAAKRLKVLAKKKVAGMV 487

Query: 61  TRRKFVRR 65
           TRRKF+RR
Sbjct: 488 TRRKFIRR 495

BLAST of CmoCh04G008180 vs. NCBI nr
Match: KAG6600594.1 (AAA-ATPase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.8 bits (260), Expect = 3.3e-19
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1   MKSEDAEVSLQCVVKLLKRKKLEEEKNGNGEEGEEDKVRAAKRLKVLAKKKVAGMVTRRK 60
           MKSEDAEVSLQCVVKLLKRKKLEEE+NGNGEE EE KVRA KRLKV AKKKVAGMVTRRK
Sbjct: 422 MKSEDAEVSLQCVVKLLKRKKLEEEENGNGEEEEEGKVRATKRLKVQAKKKVAGMVTRRK 481

Query: 61  FVRR 65
           F+RR
Sbjct: 482 FMRR 485

BLAST of CmoCh04G008180 vs. NCBI nr
Match: KAG7031231.1 (AAA-ATPase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.6 bits (257), Expect = 7.4e-19
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1   MKSEDAEVSLQCVVKLLKRKKLEEEKNGNGEEGEEDKVRAAKRLKVLAKKKVAGMVTRRK 60
           MKSEDAEVSLQCVVKLLKRKKLEEE+NGNGEE EE KVRA KRLKV AKKKVAGMVTR+K
Sbjct: 428 MKSEDAEVSLQCVVKLLKRKKLEEEENGNGEEEEEGKVRATKRLKVQAKKKVAGMVTRKK 487

Query: 61  FVRR 65
           F+RR
Sbjct: 488 FMRR 491

BLAST of CmoCh04G008180 vs. NCBI nr
Match: XP_022943073.1 (AAA-ATPase At5g17760-like isoform X5 [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18
Identity = 56/64 (87.50%), Postives = 58/64 (90.62%), Query Frame = 0

Query: 1   MKSEDAEVSLQCVVKLLKRKKLEEEKNGNGEEGEEDKVRAAKRLKVLAKKKVAGMVTRRK 60
           MKSEDAEVSLQCVVKLLKRKKLEEE+NGNGEE EE KVR  KRLKV AKKKV GMVTRRK
Sbjct: 428 MKSEDAEVSLQCVVKLLKRKKLEEEENGNGEEEEEGKVRGTKRLKVQAKKKVTGMVTRRK 487

Query: 61  FVRR 65
           F+RR
Sbjct: 488 FIRR 491

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FWA75.0e-2192.65AAA-ATPase At5g17760-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114479... [more]
A0A6J1FT766.5e-2191.18AAA-ATPase At5g17760-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114479... [more]
A0A6J1FWA97.9e-1987.50AAA-ATPase At5g17760-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC1114479... [more]
A0A6J1FQQ51.4e-1887.50AAA-ATPase At5g17760-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC1114479... [more]
A0A6J1IZ911.1e-1783.82AAA-ATPase At5g17760-like OS=Cucurbita maxima OX=3661 GN=LOC111479789 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
XP_022943068.11.0e-2092.65AAA-ATPase At5g17760-like isoform X1 [Cucurbita moschata][more]
XP_022943069.11.3e-2091.18AAA-ATPase At5g17760-like isoform X2 [Cucurbita moschata] >XP_022943070.1 AAA-AT... [more]
KAG6600594.13.3e-1990.63AAA-ATPase, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7031231.17.4e-1989.06AAA-ATPase, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022943073.11.6e-1887.50AAA-ATPase At5g17760-like isoform X5 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G008180.1CmoCh04G008180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity