CmoCh04G007920 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G007920
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 3956402 .. 3957440 (-)
RNA-Seq ExpressionCmoCh04G007920
SyntenyCmoCh04G007920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGCTGGCAGGTCGCTTCCTTGGCAGTTAGCAAGCATTTAGTGTGTGCGCTCCTCTTTCTTCCACACACTCTCTCTCTCTCTCTCTTTCTCTCTTCGCCTCTTTTCCATTTTGCACATTTCAATGCTTCCTTCCTTCCGCTTACATTACACCTCTGTTTCTTCTTTGTCCCTTTGATCACTCACTCCCTTCGCCCCATTTCTTCTGAAATTCCCATCTCTTCTTCCCTTCTAAATCTTCTCTCGTTTTCCTGTTTCTCATCTTCCAATCCCCCTCCATTCTGCTTCCATTCGAGGTATTGTAATCGAATCCCTCTGCATTTATTGCTGTACTGTTATGTTTCCCTTCTCTGCTTCTGTTTGTTTGGTGAACTCAGAGTGATTTGCCTGTTTTAATGGGGTTTTTCATTGTCAGTGAGCTTAAATCAAACACTAATTACGATTCTGTTTCTTTCTTTTTCTTGGGGTTTTTCATTGATGATTACCCAAATTGAATGTGTTCTTCACATGGGCATTTCTCGTTTACCTTATATATATTCTGCAATTTCCAAATGTAATATCGGTTTTCAGTTGACTTTGATGAGATATGCTTTCTTGACTTCTTGACTGTTGTCTAGGAAGATGCTGCGAAGGTTTCAGAAGGTTTTATTTATTTAATTTTCGAATTGGTAATTGGAGATTTTCATTCGATTCTGCGCAGAGATTGAATAATTTTCTTTTCCTTTCAAATTATAGCTAATAAATTGAATGCTGGATTCTGTTTTTTCCCCTTTTCTCTAAGCTTAGGAATTAAAAACATCATTTTCATCTATTCTGTCAGAAACACATATGTTCCATATTTTCATCGAGCTTCTTATTGTTTTCGTTCTTAGCTTGTCTTTTGGAAATATTAAGAATTATATGATTTATTCATATGGGAAGGGAATGTAAAAGCTGTTGGAACAATCAAACTTGCAAATCCATAGAAAATTCTCCAGTTCGTCTACGATCTATTTGCTCCGAATTGATATTTGGCTGTTGGGCATCAATGAAATGA

mRNA sequence

ATGGCAGGCTGGCAGGTCGCTTCCTTGGCAGTTAGCAAGCATTTAGTGTGTGCGCTCCTCTTTCTTCCACACACTCTCTCTCTCTCTCTCTTTCTCTCTTCGCCTCTTTTCCATTTTGCACATTTCAATGCTTCCTTCCTTCCGCTTACATTACACCTCTGTTTCTTCTTTGTCCCTTTGATCACTCACTCCCTTCGCCCCATTTCTTCTGAAATTCCCATCTCTTCTTCCCTTCTAAATCTTCTCTCGTTTTCCTGTTTCTCATCTTCCAATCCCCCTCCATTCTGCTTCCATTCGAGGGAATGTAAAAGCTGTTGGAACAATCAAACTTGCAAATCCATAGAAAATTCTCCAGTTCGTCTACGATCTATTTGCTCCGAATTGATATTTGGCTGTTGGGCATCAATGAAATGA

Coding sequence (CDS)

ATGGCAGGCTGGCAGGTCGCTTCCTTGGCAGTTAGCAAGCATTTAGTGTGTGCGCTCCTCTTTCTTCCACACACTCTCTCTCTCTCTCTCTTTCTCTCTTCGCCTCTTTTCCATTTTGCACATTTCAATGCTTCCTTCCTTCCGCTTACATTACACCTCTGTTTCTTCTTTGTCCCTTTGATCACTCACTCCCTTCGCCCCATTTCTTCTGAAATTCCCATCTCTTCTTCCCTTCTAAATCTTCTCTCGTTTTCCTGTTTCTCATCTTCCAATCCCCCTCCATTCTGCTTCCATTCGAGGGAATGTAAAAGCTGTTGGAACAATCAAACTTGCAAATCCATAGAAAATTCTCCAGTTCGTCTACGATCTATTTGCTCCGAATTGATATTTGGCTGTTGGGCATCAATGAAATGA

Protein sequence

MAGWQVASLAVSKHLVCALLFLPHTLSLSLFLSSPLFHFAHFNASFLPLTLHLCFFFVPLITHSLRPISSEIPISSSLLNLLSFSCFSSSNPPPFCFHSRECKSCWNNQTCKSIENSPVRLRSICSELIFGCWASMK
Homology
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BLAST of CmoCh04G007920 vs. NCBI nr
Match: KAG6600568.1 (hypothetical protein SDJN03_05801, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227.3 bits (578), Expect = 8.3e-56
Identity = 115/121 (95.04%), Postives = 116/121 (95.87%), Query Frame = 0 

Query: 1   MAGWQVASLAVSKHLVCALLFLPHTLSLSLFLSSPLFHFAHFNASFLPLTLHLCFFFVPL 60
           MAGWQVASLAVSKHLVCALLFLPHT +LS  LSSPLFHFAHFNASFLPLTLHLCFFFVPL
Sbjct: 1   MAGWQVASLAVSKHLVCALLFLPHTHTLS--LSSPLFHFAHFNASFLPLTLHLCFFFVPL 60

Query: 61  ITHSLRPISSEIPISSSLLNLLSFSCFSSSNPPPFCFHSRECKSCWNNQTCKSIENSPVR 120
           ITHSLRPISSEIPISSSLLNLLSFSCFSSSNPPPFCFHSRECKSCWNNQTCKSIENSP  
Sbjct: 61  ITHSLRPISSEIPISSSLLNLLSFSCFSSSNPPPFCFHSRECKSCWNNQTCKSIENSPSH 119

Query: 121 L 122
           L
Sbjct: 121 L 119

The following BLAST results are available for this feature:
BLAST of CmoCh04G007920 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G007920 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G007920 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600568.18.3e-5695.04hypothetical protein SDJN03_05801, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh04G007920 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G007920.1CmoCh04G007920.1mRNA