CmoCh04G007850 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G007850
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 3935461 .. 3937328 (-)
RNA-Seq ExpressionCmoCh04G007850
SyntenyCmoCh04G007850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTGGTTTTTTCTGTAGGGCTCTCTTGGATTAAACCTCAGCGACAAGAATCCGTAGAACACGTAGTGTAAACTGAAATGTAAGTTGAAGAACATGAAGAACATGAAAAACTGATGTTTTTTTACACAATTTCAATTCAATTGATTCATTGTTTGTTATGTTCTTGTAGGTAGCGATGGCTGTCTCTACTTGGTTGGACAAATGGCAAAGCCCATGCAGGTTTTGGCAGAGAAAAGTTTGAAAGAGATGGCTTTTAACAGGTTGGCTAATGGCTTATAAATTAATATATACATTCTAATCTTCATATTATATTATATTCATTCATTACTTAAAAAAAAACCCCTTTAATTATTTCTTCTTTTCTCACTTTCTAATCTTGTCTGGTAATTATGATGATGAAATGAATGTGTTTGTGCTGAATAGTATGAATTTTTTGTTTTCTTTCCCCTTCTTTTTGTTCTCTCCTCACTTAAACCAATTATTGGTCTTCTAAAAACACACTAAATTACTGTAGTTTAGGCACTACATTTGCTGTTGGCTTTGTAGCTGATTTTTTCCCCAATGTTGTATTCTTTGCCTTCTTTATAAGGGTGTATAAACCTCTCTATCTAGCAGACGCGTTTAAAAACCTATAGGAAAAGACTAAAAGGGAAAATCCAAAGAGAACAATATCTACTAGCGGTGGGCTTGGATTGTTAGGTATACTATTTATGAAAGGCTTTCGATTTTGATGTTTGTGTACTTGAATTTGATTTGGTTGACTTTGATTAAACAAATTTATGAGTAAAAGTAAGCCCTTATGTGAAATGGGATTTAAGATACGAAAATGACAGTTCTATATATGGATATATATTTAACACATTTTCTGGAGGGACTAATCCCAATCAATTAACAATAATTGAAGGATTAAATGCAAAAAAATAGACTTTTAGGGAGTGACCCAGTGGCAAGCTAGCTAAGTTATTGCTATCTCACTCCAAAGATCCATTTTTTTTTTCAGGTCATTTATTGCTTATTTACACATAAAAACACATGATCCAAGTATTTATATGCTATTTAATTCTTCAAATATTTAGTATTTATGCTCCTAGCGAGCTATTGATGATCTTACTCCTATTTCCCTATTATTATGTGGTTTTGTTATAAATTGATTAGCTAGTAGCTTAATAATGCACTTGTTTATTATGGACAAATTTTCTTGTTTTTCTTCTAATGCCCATAAAATCATACCATTTACTACTACCACTCATCAACATATGCTTGGTTGCATTCATTTAGTACTTTTTCATATCCAAAATTCTTTGTTTTTGACATGAATTATGGCTTTTTAGCATGAGAATTCAGAGAAATGAACTGCTTCTATATATATATTTGTCTTGCCTTCATGATGTAGTGAGTAAATTGATGTAGTGATTTTAGGGTTGGTCGAAGTGTTGAAGCATTGTTTGGACCAAAAAACATAGCAGTTAAACCATAACAGACAACATAGGAACACAAATGCTGCTGTCCAATTCTTGTTCTTGATATTGTTGATCATCTCATGAATGTTTTTTTTTTTTTTTTGTTTTTTTTTGTGCAGTTTTGGATATGGCAGTGGAAGCAAATGCTTTCTTTTTCTGGTGATTAAATGCTTCATTTCTGTTGACAATCACAGTCTCACAAACAAGTTTGGTTTTGTTTATAGGTTTTGACATCTTTGTTCCAAGGTGTGTTTTTTGTTCTGACAATGTTCTAAACTTGTGTCTCTTTGTGTAAAACATTATTGTAACATGCTTTTAATTTGTAATATTTTAGGGAAAAGTTTAAGAGGGAAAAAGAATTGAAGTGTTTTTTCTTTCTTTTAAGGGAGATGCTTATTCACAGG

mRNA sequence

ATGTTGTTGTGTAAACTGAAATGTAGCGATGGCTGTCTCTACTTGGTTGGACAAATGGCAAAGCCCATGCAGGTTTTGGCAGAGAAAAGTTTGAAAGAGATGGCTTTTAACAGTTTTGGATATGGCAGTGGAAGCAAATGCTTTCTTTTTCTGGTGATTAAATGCTTCATTTCTGTTGACAATCACAGTCTCACAAACAAGTTTGGTTTTGTTTATAGGTTTTGACATCTTTGTTCCAAGGTGTGTTTTTTGTTCTGACAATGTTCTAAACTTGTGTCTCTTTGTGTAAAACATTATTGTAACATGCTTTTAATTTGTAATATTTTAGGGAAAAGTTTAAGAGGGAAAAAGAATTGAAGTGTTTTTTCTTTCTTTTAAGGGAGATGCTTATTCACAGG

Coding sequence (CDS)

ATGTTGTTGTGTAAACTGAAATGTAGCGATGGCTGTCTCTACTTGGTTGGACAAATGGCAAAGCCCATGCAGGTTTTGGCAGAGAAAAGTTTGAAAGAGATGGCTTTTAACAGTTTTGGATATGGCAGTGGAAGCAAATGCTTTCTTTTTCTGGTGATTAAATGCTTCATTTCTGTTGACAATCACAGTCTCACAAACAAGTTTGGTTTTGTTTATAGGTTTTGA

Protein sequence

MLLCKLKCSDGCLYLVGQMAKPMQVLAEKSLKEMAFNSFGYGSGSKCFLFLVIKCFISVDNHSLTNKFGFVYRF
Homology
[Close]
BLAST of CmoCh04G007850 vs. NCBI nr
Match: KAG7031204.1 (B3 domain-containing transcription factor NGA1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.7 bits (348), Expect = 2.1e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 9   SDGCLYLVGQMAKPMQVLAEKSLKEMAFNSFGYGSGSKCFLFLVIKCFISVDNHSLTNKF 68
           SDGCLYLVGQMAKPMQVLAEKSLKEMAFNSFGYGSGSKCFLFLVIKCFISVDNHSLTNKF
Sbjct: 327 SDGCLYLVGQMAKPMQVLAEKSLKEMAFNSFGYGSGSKCFLFLVIKCFISVDNHSLTNKF 386

Query: 69  GFVYRF 75
           GFVYRF
Sbjct: 387 GFVYRF 392

[Close]
BLAST of CmoCh04G007850 vs. NCBI nr
Match: KAG6600563.1 (B3 domain-containing transcription factor NGA1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.5 bits (345), Expect = 4.7e-29
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 7   KCSDGCLYLVGQMAKPMQVLAEKSLKEMAFNSFGYGSGSKCFLFLVIKCFISVDNHSLTN 66
           K  DGCLYLVGQMAKPMQVLAEKSLKEMAFNSFGYGSGSKCFLFLVIKCFISVDNHSLTN
Sbjct: 334 KNPDGCLYLVGQMAKPMQVLAEKSLKEMAFNSFGYGSGSKCFLFLVIKCFISVDNHSLTN 393

Query: 67  KFGFVYRF 75
           KFGFVYRF
Sbjct: 394 KFGFVYRF 401

The following BLAST results are available for this feature:
BLAST of CmoCh04G007850 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G007850 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G007850 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031204.12.1e-29100.00B3 domain-containing transcription factor NGA1, partial [Cucurbita argyrosperma ... [more]
KAG6600563.14.7e-2997.06B3 domain-containing transcription factor NGA1, partial [Cucurbita argyrosperma ... [more]
BLAST of CmoCh04G007850 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G007850.1CmoCh04G007850.1mRNA