CmoCh04G007820 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G007820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr04: 3905608 .. 3907420 (+)
RNA-Seq Expression	CmoCh04G007820
Synteny	CmoCh04G007820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCTTTGGTAATTAGTTCGGAAATTGCCTGTCATTCTCAGGAATAAGAGATATTAAAGGGTATAATCAAATTACAAATCTTTTTTTTTTTTTTTAAATTTTTATTTTTATGAAAGCTTAATAAAAAAAAAAAAAGAAATATATGGTTAACAAAATCTAAAAAATCCCTAGAACTGCGGAAGAAATAAAATCAAGTAATCAATTAGTTGAATCAAAAAAGGAAAAGAAGAAAACATCAATTTAATGTACATAGCCGTTCGTATCGTTGACGGTTTTCGACGGACGAAGTCAAACGGTCTTCATAGCCGTTATAGCCATCGCTTAGTCGGACGCCACCTGTCTCGCCCACCGCGGATTTTACACGGCTTATATATTTCTCCCCCACTCACACTCTCTTCTTCAGCACATTCTCACACTAGAATCAGAGCGCTCCCATCAACGGCCTCTTTCCCTCTTGAGCGTTCGTTGCCGAAATCGAACTCTCGACCATTACCAGGCGATCGGAGGAAGATGGCCTCTTTCCTCTTGAGCGTTCGTTGCCGAAATCGAACGCTCGACCATTACCAGGGAGAGCAGAATCGAAAGAAGTTTCTCGCCTCCTCAAACATAGAGGTAATGTCACTTCATTTAGTTTATGGGTAGTTTGGTCTTGGCTATTCTGTTCTGGGTTTGAAATTTTAAGGGTACAGCCGGCTATTCCGATTTTGGGGTTCACTGGAGAACTCAGAGGTTAATCAAAGGATTGTATCTTTCCTTTTTTTCTTTTGCATGTTATCGACACCTTTTGTATTTTTCGTGGTTTCGATTACGGAGGATTAGGGCGTTTTTAGTAGGTTCATTGCTTCCATGGCAACCTGATTATTATATTGGACTCTTCGTTTCACACCCCGTCATCTTCTATCTCTTCTCGGGGGACAAACCTGATATTCAATTTCATGTGTTGGCAGATGAGAGGAGCTCGTATGTCACTCAGACTGGTTCCGACAACAGAGAGGGGAAGCACAAAGCAATTACTCTTGAAGCAGTTGGTCCTCTCACTGCCGGTGGGGTTTTCGCATCTGCTAGGAATACTGGTATGATTTCAAGTTTTTGAATATTCTGATCATCTCACTGAGGTCTGTGAAGTTGAATTTAAGTTTTTGGGGGGTCTTTTAAGATTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTATAATTATTATTTGTAGCTTCATCTTCTTTTAGATGTTACTCTGTTTTTCGGCACACGGATTATGTCAGCATTTAACTTAAGTTCTGTGAAGATGTTGTAGTTTTCAGTATTTGCATACTTGTCTTTCAATGTTAGTATGCCCACATTTCTTACAGTAGTATTCTATTTTCTGAACCCTCACAGCTTTGCATTTAGATTCATTTAAAAGGTCATTTACCAAGGAAGATGTTATACCTATATATTTAGGGTCTTCTCTTTTAAACAACGTGGACTATGATCACATTCATAATATTTGAGCGCATGTTGAAGGATTTACAGCTTTTTTCCGGTTATTTGCATATGATTTCAACATAAATGAAGTGTTTTACTTAAATTTCTTCCCTAATTAGTCACAAGGCCCTAATAGTTGAGTTGAGTGACTACTTCAAAGCTAGCTAATACATTTAGACCGAGGCTGAGATTATCTTGTTGTTATATGCATTTGTGCACACACTTACATTATGGAAAAGATACCTTTTGACATTTTCTCTACCTTACATTTTCTTTTAAAGGTAGAAGAAAGAATTTGGTCGGTCGAAGAGGTAAAATGCGGGTTCTAAGGAAGAATTTGGTCTGCTGA

mRNA sequence

ATGACCCTTTGGCGATCGGAGGAAGATGGCCTCTTTCCTCTTGAGCGTTCGTTGCCGAAATCGAACGCTCGACCATTACCAGGGAGAGCAGAATCGAAAGAAGTTTCTCGCCTCCTCAAACATAGAGATGAGAGGAGCTCGTATGTCACTCAGACTGGTTCCGACAACAGAGAGGGGAAGCACAAAGCAATTACTCTTGAAGCAGTTGGTCCTCTCACTGCCGGTGGGGTTTTCGCATCTGCTAGGAATACTGGTAGAAGAAAGAATTTGGTCGGTCGAAGAGGTAAAATGCGGGTTCTAAGGAAGAATTTGGTCTGCTGA

Coding sequence (CDS)

ATGACCCTTTGGCGATCGGAGGAAGATGGCCTCTTTCCTCTTGAGCGTTCGTTGCCGAAATCGAACGCTCGACCATTACCAGGGAGAGCAGAATCGAAAGAAGTTTCTCGCCTCCTCAAACATAGAGATGAGAGGAGCTCGTATGTCACTCAGACTGGTTCCGACAACAGAGAGGGGAAGCACAAAGCAATTACTCTTGAAGCAGTTGGTCCTCTCACTGCCGGTGGGGTTTTCGCATCTGCTAGGAATACTGGTAGAAGAAAGAATTTGGTCGGTCGAAGAGGTAAAATGCGGGTTCTAAGGAAGAATTTGGTCTGCTGA

Protein sequence

MTLWRSEEDGLFPLERSLPKSNARPLPGRAESKEVSRLLKHRDERSSYVTQTGSDNREGKHKAITLEAVGPLTAGGVFASARNTGRRKNLVGRRGKMRVLRKNLVC

Homology

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BLAST of CmoCh04G007820 vs. NCBI nr
Match: KAG7031201.1 (hypothetical protein SDJN02_05241, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 68/97 (70.10%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 5   RSEEDGLFPLERSLPKSNARPLPGRAESKEVSRLL------------------KHRDERS 64
           RSEEDGLFPLERSLPKSNARPLPG     E +R                    + RDERS
Sbjct: 10  RSEEDGLFPLERSLPKSNARPLPGDRRKGEQNRKKFLASSKIEPAIPILGFTGELRDERS 69

Query: 65  SYVTQTGSDNREGKHKAITLEAVGPLTAGGVFASARN 84
           SYVTQTGSDNREGKHKAITLEAVGPLTAGGVFASARN
Sbjct: 70  SYVTQTGSDNREGKHKAITLEAVGPLTAGGVFASARN 106

The following BLAST results are available for this feature:

BLAST of CmoCh04G007820 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G007820 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G007820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031201.1	1.1e-23	70.10	hypothetical protein SDJN02_05241, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh04G007820 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G007820.1	CmoCh04G007820.1	mRNA