CmoCh04G007760 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G007760
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr04: 3878565 .. 3879716 (+)
RNA-Seq Expression	CmoCh04G007760
Synteny	CmoCh04G007760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGTTTATTACAATGTGAACTTTTACATTCTGTTATTTCAAGTTTATTTGATTTCAGAATAGTTGATATGTGCATGGCTTCTATTTCCTTCCCAAACCCACATTTCTGCTACAGTAGAGCACAGCCCAAGTACCAATTTAGGGAAGAGAGAAGGTTCAAAGCCTTTCAAATTGAAATTTCCAATCTATTTCTATTATGCATTGCCCAAGATTTTTCAATTTACATGGTTTTTCTTCAATTGTTCGTAGACAGGTTTTTGAACAGGTATGCCTGCTCAAAGCGAAGAACAATATTTCTGAAGAAGAAGAGAATTGATATGCTAGATTACCTCTATACCGCGCAGTATCAAATTAGGGGCATTGTTGCTGAGGTGGGTTTCTGGCCTTCTGGTTTCTATAAATCTATTAAACGTTCAAAATTTTGTGTGAAGTTTGTTTTCATTTTATTTCTGCAGGACGTGCCTGTGATCAAAACAATGAAAGGTATACCCATGGTGTGTAAGTTCTCTTGTTTTCTTCCATCTTCTCATTGATTGTTCTTCTACACATGGTGCACGCCAAAAAAGTCTCTCCTGCACTGAATTCCTATATTTCTTTTTATGTAACTCCCCAAACGATGTTTCTGCAGATGGATTATGATATTTCAACGAATTCTTAGTTCCTCAGAGACCCCTTTTCTAGAACAAGTAAAAGGGCATGTTCTGGGAGTGATTTTAAAATGGTTCTAATAGTTTTTGTCATACTGAAAATCACTCCAAAAGGGATATTTAATCCTTCAAATTATTTGAGCGTTTGGTTTTACAGTTTTAATGTGATTTTCACATCATCAAAATTGATTTTGAATAATTAAATGAATATTTTGGAGTGGTCTTTTGATCATTTCAACTTCAGTCTCAAATATGCCCTAAAGTTTTGATTGATTTCCACGTGAGGTGTACTCTTTTTGGCTGTCAAAGCGCTAAATTCTTTGTTTAATTGCTGTTGTTTTCAGTAGATATTTTATCTTCTCTCTTTCTCTGCCGCTTTCTGTTTGGTCAGCATGTTGTGTTGTAATTTTCTTGGCTGGCATTTATGATAAATCTGTCTCAACATTTTTCTCTCTTCAGATGGAAGCAAAAAGGGTCAAAAACAAATCCAGACGGGAGTGA

mRNA sequence

ATGAGAAGTTTATTACAATGTGAACTTTTACATTCTGTTATTTCAAGTTTATTTGATTTCAGAATAGTTGATATGTGCATGGCTTCTATTTCCTTCCCAAACCCACATTTCTGCTACAGTAGAGCACAGCCCAAGTACCAATTTAGGGAAGAGAGAAGACAGGTTTTTGAACAGTATCAAATTAGGGGCATTGTTGCTGAGGACGTGCCTGTGATCAAAACAATGAAAGGTATACCCATGATGGAAGCAAAAAGGGTCAAAAACAAATCCAGACGGGAGTGA

Coding sequence (CDS)

ATGAGAAGTTTATTACAATGTGAACTTTTACATTCTGTTATTTCAAGTTTATTTGATTTCAGAATAGTTGATATGTGCATGGCTTCTATTTCCTTCCCAAACCCACATTTCTGCTACAGTAGAGCACAGCCCAAGTACCAATTTAGGGAAGAGAGAAGACAGGTTTTTGAACAGTATCAAATTAGGGGCATTGTTGCTGAGGACGTGCCTGTGATCAAAACAATGAAAGGTATACCCATGATGGAAGCAAAAAGGGTCAAAAACAAATCCAGACGGGAGTGA

Protein sequence

MRSLLQCELLHSVISSLFDFRIVDMCMASISFPNPHFCYSRAQPKYQFREERRQVFEQYQIRGIVAEDVPVIKTMKGIPMMEAKRVKNKSRRE

Homology

[Close]

BLAST of CmoCh04G007760 vs. ExPASy TrEMBL
Match: A0A6J1J750 (uncharacterized protein LOC111481959 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111481959 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.3e-31
Identity = 83/118 (70.34%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 1   MRSLLQCELLHSVISSLFDFRIVDMCMASISFPNPHFCYSRAQPKYQFREE--------- 60
           MRSLLQ ELLHSVISSLFDFR VDMCMASIS PNPHFCY RAQPKYQFREE         
Sbjct: 1   MRSLLQSELLHSVISSLFDFRRVDMCMASISLPNPHFCYGRAQPKYQFREERRFLNRYAC 60

Query: 61  --RRQVF--------------EQYQIRGIVAEDVPVIKTMKGIPMMEAKRVKNKSRRE 94
             RR +F               QYQ+RGIVAE VPVIKT KGIPMMEAKRVKNKSRRE
Sbjct: 61  SKRRTIFLKKKRMDMLDYLYTSQYQMRGIVAEVVPVIKTKKGIPMMEAKRVKNKSRRE 118

[Close]

BLAST of CmoCh04G007760 vs. ExPASy TrEMBL
Match: A0A6J1IZ23 (uncharacterized protein LOC111481959 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481959 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 9.4e-25
Identity = 70/106 (66.04%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 1   MRSLLQCELLHSVISSLFDFRIVDMCMASISFPNPHFCYSRAQPKYQFREE--------- 60
           MRSLLQ ELLHSVISSLFDFR VDMCMASIS PNPHFCY RAQPKYQFREE         
Sbjct: 1   MRSLLQSELLHSVISSLFDFRRVDMCMASISLPNPHFCYGRAQPKYQFREERRFLNRYAC 60

Query: 61  --RRQVF--------------EQYQIRGIVAEDVPVIKTMKGIPMM 82
             RR +F               QYQ+RGIVAE VPVIKT KGIPM+
Sbjct: 61  SKRRTIFLKKKRMDMLDYLYTSQYQMRGIVAEVVPVIKTKKGIPMV 106

[Close]

BLAST of CmoCh04G007760 vs. ExPASy TrEMBL
Match: A0A6J1J5M8 (uncharacterized protein LOC111481959 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481959 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.4e-20
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MRSLLQCELLHSVISSLFDFRIVDMCMASISFPNPHFCYSRAQPKYQFREERRQVFEQ 59
          MRSLLQ ELLHSVISSLFDFR VDMCMASIS PNPHFCY RAQPKYQFREERR+VFEQ
Sbjct: 1  MRSLLQSELLHSVISSLFDFRRVDMCMASISLPNPHFCYGRAQPKYQFREERRKVFEQ 58

[Close]

BLAST of CmoCh04G007760 vs. ExPASy TrEMBL
Match: A0A6J1J209 (uncharacterized protein LOC111481959 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111481959 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.4e-20
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MRSLLQCELLHSVISSLFDFRIVDMCMASISFPNPHFCYSRAQPKYQFREERRQVFEQ 59
          MRSLLQ ELLHSVISSLFDFR VDMCMASIS PNPHFCY RAQPKYQFREERR+VFEQ
Sbjct: 1  MRSLLQSELLHSVISSLFDFRRVDMCMASISLPNPHFCYGRAQPKYQFREERRKVFEQ 58

[Close]

BLAST of CmoCh04G007760 vs. NCBI nr
Match: XP_022983364.1 (uncharacterized protein LOC111481959 isoform X3 [Cucurbita maxima])

HSP 1 Score: 144.4 bits (363), Expect = 4.8e-31
Identity = 83/118 (70.34%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 1   MRSLLQCELLHSVISSLFDFRIVDMCMASISFPNPHFCYSRAQPKYQFREE--------- 60
           MRSLLQ ELLHSVISSLFDFR VDMCMASIS PNPHFCY RAQPKYQFREE         
Sbjct: 1   MRSLLQSELLHSVISSLFDFRRVDMCMASISLPNPHFCYGRAQPKYQFREERRFLNRYAC 60

Query: 61  --RRQVF--------------EQYQIRGIVAEDVPVIKTMKGIPMMEAKRVKNKSRRE 94
             RR +F               QYQ+RGIVAE VPVIKT KGIPMMEAKRVKNKSRRE
Sbjct: 61  SKRRTIFLKKKRMDMLDYLYTSQYQMRGIVAEVVPVIKTKKGIPMMEAKRVKNKSRRE 118

[Close]

BLAST of CmoCh04G007760 vs. NCBI nr
Match: XP_022983352.1 (uncharacterized protein LOC111481959 isoform X1 [Cucurbita maxima])

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-24
Identity = 70/106 (66.04%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 1   MRSLLQCELLHSVISSLFDFRIVDMCMASISFPNPHFCYSRAQPKYQFREE--------- 60
           MRSLLQ ELLHSVISSLFDFR VDMCMASIS PNPHFCY RAQPKYQFREE         
Sbjct: 1   MRSLLQSELLHSVISSLFDFRRVDMCMASISLPNPHFCYGRAQPKYQFREERRFLNRYAC 60

Query: 61  --RRQVF--------------EQYQIRGIVAEDVPVIKTMKGIPMM 82
             RR +F               QYQ+RGIVAE VPVIKT KGIPM+
Sbjct: 61  SKRRTIFLKKKRMDMLDYLYTSQYQMRGIVAEVVPVIKTKKGIPMV 106

[Close]

BLAST of CmoCh04G007760 vs. NCBI nr
Match: XP_022983360.1 (uncharacterized protein LOC111481959 isoform X2 [Cucurbita maxima])

HSP 1 Score: 107.8 bits (268), Expect = 5.0e-20
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MRSLLQCELLHSVISSLFDFRIVDMCMASISFPNPHFCYSRAQPKYQFREERRQVFEQ 59
          MRSLLQ ELLHSVISSLFDFR VDMCMASIS PNPHFCY RAQPKYQFREERR+VFEQ
Sbjct: 1  MRSLLQSELLHSVISSLFDFRRVDMCMASISLPNPHFCYGRAQPKYQFREERRKVFEQ 58

[Close]

BLAST of CmoCh04G007760 vs. NCBI nr
Match: XP_022983371.1 (uncharacterized protein LOC111481959 isoform X4 [Cucurbita maxima])

HSP 1 Score: 107.8 bits (268), Expect = 5.0e-20
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MRSLLQCELLHSVISSLFDFRIVDMCMASISFPNPHFCYSRAQPKYQFREERRQVFEQ 59
          MRSLLQ ELLHSVISSLFDFR VDMCMASIS PNPHFCY RAQPKYQFREERR+VFEQ
Sbjct: 1  MRSLLQSELLHSVISSLFDFRRVDMCMASISLPNPHFCYGRAQPKYQFREERRKVFEQ 58

The following BLAST results are available for this feature:

BLAST of CmoCh04G007760 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G007760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J750	2.3e-31	70.34	uncharacterized protein LOC111481959 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IZ23	9.4e-25	66.04	uncharacterized protein LOC111481959 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J5M8	2.4e-20	91.38	uncharacterized protein LOC111481959 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J209	2.4e-20	91.38	uncharacterized protein LOC111481959 isoform X4 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmoCh04G007760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983364.1	4.8e-31	70.34	uncharacterized protein LOC111481959 isoform X3 [Cucurbita maxima]	[more]
XP_022983352.1	2.0e-24	66.04	uncharacterized protein LOC111481959 isoform X1 [Cucurbita maxima]	[more]
XP_022983360.1	5.0e-20	91.38	uncharacterized protein LOC111481959 isoform X2 [Cucurbita maxima]	[more]
XP_022983371.1	5.0e-20	91.38	uncharacterized protein LOC111481959 isoform X4 [Cucurbita maxima]	[more]

BLAST of CmoCh04G007760 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G007760.1	CmoCh04G007760.1	mRNA