CmoCh04G006860 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G006860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 3406598 .. 3407021 (-)
RNA-Seq ExpressionCmoCh04G006860
SyntenyCmoCh04G006860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGTATTGGTATGAGATTTACTGGAATTTCCGTTTTTAATTAAATAGTTACAGAGCTTTCTCCAGTTCCACCAGCTCCGACGCCGCATGCGGTGGTTGACGTCACGCACGTGGCTCACGTGTGATCTGGCTTTTCTCATCAATCCGTACACCTCCGGCGGTCGGTACATCCGGATTAACGCCCATTTTATGCCGTTGAAGAATGGATGCCGTTTGATCTCCGTCGCCCCTTTCCCGGATCCCAACCGTCTCGCCGGATCTTTCACCAGTAGTCTCTCTATCAGATCCCTCGCCTCTGCTATACCTTCCTCTTCCTCCATGGCCGCCCTGAACTTCACCCCTTCTGTAGACGCTATGTTTCTAAGCGTACCCTCCTTGTTCACTCCCCTAAACGGCGTCGTTCCGTGTAGCAGCTCGTAA

mRNA sequence

ATGATTGGTATTGGTATGAGATTTACTGGAATTTCCAGCTTTCTCCAGTTCCACCAGCTCCGACGCCGCATGCGGTGGTTGACGTCACGCACGTGGCTCACGTGTGATCTGGCTTTTCTCATCAATCCGTACACCTCCGGCGGTCGGTACATCCGGATTAACGCCCATTTTATGCCGTTGAAGAATGGATGCCGTTTGATCTCCGTCGCCCCTTTCCCGGATCCCAACCGTCTCGCCGGATCTTTCACCAGTAGTCTCTCTATCAGATCCCTCGCCTCTGCTATACCTTCCTCTTCCTCCATGGCCGCCCTGAACTTCACCCCTTCTGTAGACGCTATGTTTCTAAGCGTACCCTCCTTGTTCACTCCCCTAAACGGCGTCGTTCCGTGTAGCAGCTCGTAA

Coding sequence (CDS)

ATGATTGGTATTGGTATGAGATTTACTGGAATTTCCAGCTTTCTCCAGTTCCACCAGCTCCGACGCCGCATGCGGTGGTTGACGTCACGCACGTGGCTCACGTGTGATCTGGCTTTTCTCATCAATCCGTACACCTCCGGCGGTCGGTACATCCGGATTAACGCCCATTTTATGCCGTTGAAGAATGGATGCCGTTTGATCTCCGTCGCCCCTTTCCCGGATCCCAACCGTCTCGCCGGATCTTTCACCAGTAGTCTCTCTATCAGATCCCTCGCCTCTGCTATACCTTCCTCTTCCTCCATGGCCGCCCTGAACTTCACCCCTTCTGTAGACGCTATGTTTCTAAGCGTACCCTCCTTGTTCACTCCCCTAAACGGCGTCGTTCCGTGTAGCAGCTCGTAA

Protein sequence

MIGIGMRFTGISSFLQFHQLRRRMRWLTSRTWLTCDLAFLINPYTSGGRYIRINAHFMPLKNGCRLISVAPFPDPNRLAGSFTSSLSIRSLASAIPSSSSMAALNFTPSVDAMFLSVPSLFTPLNGVVPCSSS
Homology
[Close]
BLAST of CmoCh04G006860 vs. ExPASy TrEMBL
Match: A0A0P0YA51 (Os12g0480250 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0480250 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-05
Identity = 41/88 (46.59%), Postives = 48/88 (54.55%), Query Frame = 0 

Query: 46  SGGRYIRINAHFMPLKNGCRLISVAPFPDPNRLAGSFTSSLSIRSLASAIPSSSSMAALN 105
           SGG   RI A F P K GC LIS AP  DP+  +GSFTS   IRSLA  +    S   L 
Sbjct: 11  SGGAADRIKAQFKPSKKGCCLISAAPLNDPSLFSGSFTSKPLIRSLALLLTDGFS-GNLR 70

Query: 106 FTPSVDAMFLSVPSLFTPLNGVVPCSSS 134
           F    +  F +V S   PL GV+P +SS
Sbjct: 71  F---CETTFANVSSFPGPLKGVLPYNSS 94

[Close]
BLAST of CmoCh04G006860 vs. NCBI nr
Match: KAB8117494.1 (hypothetical protein EE612_059571, partial [Oryza sativa] >BAT17139.1 Os12g0480250, partial [Oryza sativa Japonica Group])

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-05
Identity = 41/88 (46.59%), Postives = 48/88 (54.55%), Query Frame = 0 

Query: 46  SGGRYIRINAHFMPLKNGCRLISVAPFPDPNRLAGSFTSSLSIRSLASAIPSSSSMAALN 105
           SGG   RI A F P K GC LIS AP  DP+  +GSFTS   IRSLA  +    S   L 
Sbjct: 11  SGGAADRIKAQFKPSKKGCCLISAAPLNDPSLFSGSFTSKPLIRSLALLLTDGFS-GNLR 70

Query: 106 FTPSVDAMFLSVPSLFTPLNGVVPCSSS 134
           F    +  F +V S   PL GV+P +SS
Sbjct: 71  F---CETTFANVSSFPGPLKGVLPYNSS 94

The following BLAST results are available for this feature:
BLAST of CmoCh04G006860 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G006860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0P0YA512.4e-0546.59Os12g0480250 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os12... [more]
BLAST of CmoCh04G006860 vs. NCBI nr
Match NameE-valueIdentityDescription
KAB8117494.14.9e-0546.59hypothetical protein EE612_059571, partial [Oryza sativa] >BAT17139.1 Os12g04802... [more]
BLAST of CmoCh04G006860 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G006860.1CmoCh04G006860.1mRNA