CmoCh04G006420 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G006420
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPolyamine-modulated factor 1/Kinetochore protein NNF
LocationCmo_Chr04: 3174287 .. 3178770 (+)
RNA-Seq ExpressionCmoCh04G006420
SyntenyCmoCh04G006420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTCGTTGAAGCCGTGACTCGCCGGCACTGACCGGAGTCAACTCATCAACTCGCTCACTTGCTGCCGCTCTCTAATTTCTTTTTGATGTTGTTACTTGCGCCATTTCCGCAGAGTTATATGTTGGGGTGGAATTTAGCGAGGTAGGGTTGGGGATTGAAGTGTATAAACGTTTTGAAAATGGAGAAGAAGCACGAGATTAGTACTCCGCTTAACTCCAGCCTGATTGATCTGAAAAATTCGTTCAAGCTCGCCGTTCGTTCTCTCCTGACTTCCTGTTCCAGGGAGGTAAGCACGAAAGTTGCTATAATGTGTATAATGTTCTATACTTTAGTAACCTTTTGTTCATATTTGTTTCTGGAAATGGTGTGGAATTGATGCTTTGGAATAAAAATTTCCTTATCAAGTGGCAATTTGGTTATGAGAGATATCTATAGGTTACTTTTCTTTTGAAAGAGACAGTAAATTTTGTATAGTTGTGCTTTTTTGTTTCGTAAAGGAGTTTCGGGAATGCCTTTCGGGATTTACGACCGTGGAGCAAGAAAATCTTCATCGTCTATTCGTTCAGGTACTATTGTGCTGCTCTTTTATGTCTTCCCCCGTCCTCACAGGAAAGATGTGGTGAAAGAAAATTAACATCCTATGTGTTAGACGAACACGACTCTCCACAATAGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGTTTTGCTTTGGGCTTCCCCAAAAGGCCTCACACCAATGGAGTTAGTATTCCTCACTTATAAACCCATGATCACACCCTAAATTAGTCGATGTGGGACTTCCATCATCCAACACTATGGACACAGATGCTATAATTTAAATTGGAGATCTTGTGTTTCTTTAAATATGATTCTAGGACGTTTTCTTGCGTGGATCATTCCTAGTTTTTCTGAATGTGCAAATCATGTGTTGTCTTCATGGTTAGCAGCATGTTATTTGCTTTACATTTTAAGAATTTACATATATTCTTATTGGTTTTAGTCTCTTTGGACATTGGAATAATGCATTTTGGTGTTCATCAAACTTTCAGGTTATAACTTCTTTGCACGGAAACATAGAGGTATATTTCCATTCAAGGTTTTGCTTCGGAGTCCATTGTGATGATTCCATTTCGGGATTTCCTGTTGTGTAATGTGATTATGTTATTTCTTCTTTTTCTCAACGTTAAGACCCTTAGAACATGTATGAGAGTGATTTTGAAATTGAATTACATGCCTTTAATCATTCAAGATCAACTTAGGGTTTAATTTTACAATTTTAGATGTCATTTTAAATTCATAAAAATTGTTTTTGAATAATTAAAATCATGTTTGGGAGTGATTTGGAATACGACTGAAGCGATTTTAACCATTTCAAAATCGCTCCCAAACATCTTTAATCGCATAATGTGCTTATTCTATGCTTAGGCATACTGCTGTTCCAATTGGATGTTCTCTTTAGTTATAATCATGTCACAGAATTATCACAACCCTTTATATCCATTGGATTTTCTTCTCTAATTATATTATACAAATTTTTAGCATTGAAGTTCTCAATTCTGCGCTGCAACGAGACACATGATTTAGAATAGAAAGAATATACTTATATATTGTTAATAGAAGATAGCAAGCCATGATAACACAAATTTCGATTGCTTCTGTCTCTAATAGGATAGGAAATGGAAAAAAGGAAAGTTTCTCAGAAACACGCAATTATTGTCTATCAGTAGAATGCAAATTGCCTTCGTCTTTTGCAAAAGGTAACCCATGAAATCACATGGACCTAGGTGTTTGCCATAGTCTAGTGCGGTTTTCCTCGTCCATTGCTGTTGGCTATTCACCTTACCCTGTCCTGAAATAAATCCTACAATAGGCTTCTCTTCTTTTACATTTATATGTGGTTATCGACAACATTTCATTTTAATTCTCTTTTTACATATTGCACTTCTGTTCAATAACACTGCCATTTCTGAAACATACAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAATTCTCCTGTCTATTAACTTGTTTTGGTTATTTACGATTAGCTCTTGCTTGCAAGGAACTTCTATGTGTCAGATTTGTTGGGGGGCTGTTGGGTTAAGACCTTTATGACATAATATTAATTTGTAGTTGATTTTTTCGTTCTGATCCACTTCAATGACCTTCTGTCTCCTATTCACTTTTTCCCTTCATGCGTGTATATATATATATATATAGTAAGGCATGGGAGTGATTCCGTGGACAAGTTCAATAGGATTACAGTGAGGGGGCCTTCATTGAAATTATCGATGTATTAGTTTTAAAAAACTCAAACCAGTTGCACAGTCTTGAATGTGTCAGATGCCTTTGTCCAAATAGCTGATGGTGGGTTTCAATACAAGATAAAAAACATGAATGATGGGTAAGAATTGGCGAAAATCTGTGAGATTGATCGTGATGGTTCACATGATAATAGGATTACAGGAAAAGTAATCGACATTCTGTATTGTTTCATTTCTTTTATGATAATTTTTCTTCTCAATTTCTAAATTCGCGTCACTTGTTCTTTGTCGTGTGTAATTGTAATTCGTTGGGGTTTGTTTGAAGTGATTATGCATTGCTAGTCATTTGTGTTATGTCAGGTGATTTTTCCTCTCCCATTGTGTGACTATTTGCCTCATTGTAATAGTTTTGATTTATGCAGGTAGGACGTATACTTGATAATGTTGAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTATTCCAAGAAGTAGGTATCTTCTGCTGGGAGGTTACTTTCTCAATTAGTGGTCCAAATAAGTTGGGTTCTCTGATAGTTAAATCAATGATTTGATGTATAATTATATATAATTTTTGGATGAAAATTTGAAATGTGATTGGAAGTAATAACAACTCATGGTGGTTTATGCAATTTTCCCTTGTTTTTCGTTACGCAAAGGCATGGGAAGTGATCTATTAAGGTCGGGCTTCCTTGGGCGGCCTTTACAGATTGATTTCTCAGCTGGAGTTAACAAATAACAATATCTAATGCAGGACTAATATAATGGATATTCCTAATTATCTGTCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGGTATGCAACTCTTGTAACTGTAGCGAACTTCTCCATCTAAAAACAAACCAGCTTAACTGACATTGTTACTCATGTTTTATAATTATTATTTATTTATTTATTTATTTTTGTGGGTGAGAGGGAGGGGGAGGGGGTCATTCTTAATTGATTCGAGTATAATGGAAGAATTAGGCCTTTCTTCAATGGTAAATCTTAGCATATCACCGCATTTCCCTTTAGAAGAACTGAATTCTTAAAGTCACAACAATACTGGTAGTTTTGTATCCAATGGATCTTTTTTCTGTGATTGAAAATTGAAACAAATGAGTATGCTCTGATCCATCTGTAAGCACGCATCTTAGCTTTTAGGTAAAAAAGGCTCAATAATGCATTTGCTTTTGTTTGCTTGTATTTCTTGGGCGTGTCTCCCTGTGGTACTCTTTCTACTTTGTATTTTATGCATCTTCTTGTACCGTCCTTTCCACTTTAGTTCCCAAAAACAATCTGTGCTGTCTTTTCTTTTATGGTCCTTGCCAGCTGCCAATTAATGATGTGTGGCTTCTCAAAGAATCATTGCAGATACTATCAATCAATTCCTTCCCTAGATTTTTATGGTATACGTGGCAATTTCTTGACAAATTAAGTTTACAAGTTTTCTTATGATTGAAACTTTTTCTAGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCAGATGCTGTTGAGAAGGTGCAACTTTTATTTGCTTTCCAATGACCCAATTGGTATTTTTTAAGACAGTTTAATCTTAAAAAATGTGTTCATCAATGGCCAAGTCTGAAAATAGTGGTTGATTTCTTATGAAAATTCCAAGAATTTAAACCATCTAGAAGAGAGAATAAAATTCAAGACCTAGTTTCTAAGCCCTATATCTAATCCGCAAATGCTCACAGCTAAGAATCAGAGGCAGAGCTTCTGCAACTGATGGTGATAACGGGACCTGCGATACATAACTCGCTGCTGCCTGTTGCCATCCTATTTGATTTCGTCCTGTTAAATGCATCTGGGATTGACGTTGAATAATGAGGTCAGTATGTAATTCAGTAGATTTCTTTGTGTAAATTTCTTCAGCTTAGCTCAAGCTTAATATGTTTTATGTTGTGGATCATGTGTTCTTCTGTCAATTCAACCGCTATATGGCTTTTGTTTTTCCTCTTCCACTCTCCGTGAAATCTCTATTTGCCTTTTTTCTTTAGCTTAGTCCAATTTTATTTAGGTATATATGATCAGTCAGAATATTTATGGGCAACATTTCACAGAAATTTCTTGGTGATGCAAATATTC

mRNA sequence

TTGTCGTTGAAGCCGTGACTCGCCGGCACTGACCGGAGTCAACTCATCAACTCGCTCACTTGCTGCCGCTCTCTAATTTCTTTTTGATGTTGTTACTTGCGCCATTTCCGCAGAGTTATATGTTGGGGTGGAATTTAGCGAGGTAGGGTTGGGGATTGAAGTGTATAAACGTTTTGAAAATGGAGAAGAAGCACGAGATTAGTACTCCGCTTAACTCCAGCCTGATTGATCTGAAAAATTCGTTCAAGCTCGCCGTTCGTTCTCTCCTGACTTCCTGTTCCAGGGAGGAGTTTCGGGAATGCCTTTCGGGATTTACGACCGTGGAGCAAGAAAATCTTCATCGTCTATTCGTTCAGGTTATAACTTCTTTGCACGGAAACATAGAGAATGCAAATTGCCTTCGTCTTTTGCAAAAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAGGACGTATACTTGATAATGTTGAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTATTCCAAGAAGACTAATATAATGGATATTCCTAATTATCTGTCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCAGATGCTGTTGAGAAGCTAAGAATCAGAGGCAGAGCTTCTGCAACTGATGGTGATAACGGGACCTGCGATACATAACTCGCTGCTGCCTGTTGCCATCCTATTTGATTTCGTCCTGTTAAATGCATCTGGGATTGACGTTGAATAATGAGGTCAGTATGTAATTCAGTAGATTTCTTTGTGTAAATTTCTTCAGCTTAGCTCAAGCTTAATATGTTTTATGTTGTGGATCATGTGTTCTTCTGTCAATTCAACCGCTATATGGCTTTTGTTTTTCCTCTTCCACTCTCCGTGAAATCTCTATTTGCCTTTTTTCTTTAGCTTAGTCCAATTTTATTTAGGTATATATGATCAGTCAGAATATTTATGGGCAACATTTCACAGAAATTTCTTGGTGATGCAAATATTC

Coding sequence (CDS)

ATGGAGAAGAAGCACGAGATTAGTACTCCGCTTAACTCCAGCCTGATTGATCTGAAAAATTCGTTCAAGCTCGCCGTTCGTTCTCTCCTGACTTCCTGTTCCAGGGAGGAGTTTCGGGAATGCCTTTCGGGATTTACGACCGTGGAGCAAGAAAATCTTCATCGTCTATTCGTTCAGGTTATAACTTCTTTGCACGGAAACATAGAGAATGCAAATTGCCTTCGTCTTTTGCAAAAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAGGACGTATACTTGATAATGTTGAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTATTCCAAGAAGACTAATATAATGGATATTCCTAATTATCTGTCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCAGATGCTGTTGAGAAGCTAAGAATCAGAGGCAGAGCTTCTGCAACTGATGGTGATAACGGGACCTGCGATACATAA

Protein sequence

MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQVITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDIPNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRASATDGDNGTCDT
Homology
[Close]
BLAST of CmoCh04G006420 vs. ExPASy TrEMBL
Match: A0A6J1FPA4 (uncharacterized protein LOC111447007 OS=Cucurbita moschata OX=3662 GN=LOC111447007 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 181/191 (94.76%), Postives = 181/191 (94.76%), Query Frame = 0 

Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV
Sbjct: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           ITSLHGNIE          DEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI
Sbjct: 61  ITSLHGNIE----------DEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180
           PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS
Sbjct: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180

Query: 181 ATDGDNGTCDT 192
           ATDGDNGTCDT
Sbjct: 181 ATDGDNGTCDT 181

[Close]
BLAST of CmoCh04G006420 vs. ExPASy TrEMBL
Match: A0A6J1IY03 (uncharacterized protein LOC111481654 OS=Cucurbita maxima OX=3661 GN=LOC111481654 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.4e-83
Identity = 168/191 (87.96%), Postives = 173/191 (90.58%), Query Frame = 0 

Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           MEKKH+I +PLNSSLIDLK SFKLAVRSLLTSCSREEFREC SGFTT EQENLH LFVQV
Sbjct: 1   MEKKHQIDSPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           ITSLHGNIE          DEFESLCIETQVGR+LDNVEQLLEEQDLDPLYSKKTNIMDI
Sbjct: 61  ITSLHGNIE----------DEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180
            +YLS+TKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIR RAS
Sbjct: 121 ADYLSITKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRCRAS 180

Query: 181 ATDGDNGTCDT 192
           A DGDNGTCDT
Sbjct: 181 AADGDNGTCDT 181

[Close]
BLAST of CmoCh04G006420 vs. ExPASy TrEMBL
Match: A0A6J1EZ15 (uncharacterized protein LOC111437518 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437518 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.6e-71
Identity = 147/188 (78.19%), Postives = 160/188 (85.11%), Query Frame = 0 

Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           M+KKHEI TP++SS IDLK SFKLAVRSLLTSCSREEFREC S FTT EQE LHRLF+QV
Sbjct: 1   MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           ITSLHGNIE          DEFESLC+ETQVG +LDNVEQLLEEQDLDPLYSKKTNIM+I
Sbjct: 61  ITSLHGNIE----------DEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIMEI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180
            NYLSMTKKNEIQHLKDMLKT+EEQNRH+Q RID+L+KGV+DAS M DAVEKLR R RA 
Sbjct: 121 ANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKLRNRCRAY 178

Query: 181 ATDGDNGT 189
           A DG + T
Sbjct: 181 ADDGVSRT 178

[Close]
BLAST of CmoCh04G006420 vs. ExPASy TrEMBL
Match: A0A6J1C7G2 (uncharacterized protein LOC111008110 OS=Momordica charantia OX=3673 GN=LOC111008110 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 8.0e-71
Identity = 149/190 (78.42%), Postives = 159/190 (83.68%), Query Frame = 0 

Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           MEKKHE+STP +SS +DLK SFKLAVRSLLTSCSREEFREC   FT  EQE LHRLF+QV
Sbjct: 1   MEKKHEVSTPASSSHLDLKKSFKLAVRSLLTSCSREEFRECFLRFTNAEQEYLHRLFIQV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           ITSLHGNIE          DEFESLCIETQVG ILDNVEQLLEEQ LDPLYSKKTNIMDI
Sbjct: 61  ITSLHGNIE----------DEFESLCIETQVGPILDNVEQLLEEQGLDPLYSKKTNIMDI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180
            NYLSMTKKNEIQ LKDMLKT+EEQN+H+QARID+L+KGV+D SG ADAVEKL  R RA 
Sbjct: 121 ANYLSMTKKNEIQRLKDMLKTAEEQNQHVQARIDLLRKGVQDVSGTADAVEKLWNRCRAY 180

Query: 181 ATDGDNGTCD 191
           ATDG N TCD
Sbjct: 181 ATDGVNETCD 180

[Close]
BLAST of CmoCh04G006420 vs. ExPASy TrEMBL
Match: A0A6J1J4K9 (uncharacterized protein LOC111483373 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483373 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 6.8e-70
Identity = 145/188 (77.13%), Postives = 159/188 (84.57%), Query Frame = 0 

Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           M+KKHEI TP++SS IDLK SFKLAVRSLLTSCSR EFREC S FTT EQE LHRLF+QV
Sbjct: 1   MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           ITSLHGNIE          DEFESLC+ET+VG +LDNVEQLLEEQDLDPLYSKKTNIM+I
Sbjct: 61  ITSLHGNIE----------DEFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180
            NYLSMTKKNEIQHLKDMLKT+EEQNRH+Q RID+L+KGV+DAS M DAVEKLR R RA 
Sbjct: 121 ANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKLRNRCRAY 178

Query: 181 ATDGDNGT 189
           A DG + T
Sbjct: 181 ADDGVSRT 178

[Close]
BLAST of CmoCh04G006420 vs. NCBI nr
Match: XP_022941729.1 (uncharacterized protein LOC111447007 [Cucurbita moschata])

HSP 1 Score: 342.4 bits (877), Expect = 2.5e-90
Identity = 181/191 (94.76%), Postives = 181/191 (94.76%), Query Frame = 0 

Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV
Sbjct: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           ITSLHGNIE          DEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI
Sbjct: 61  ITSLHGNIE----------DEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180
           PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS
Sbjct: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180

Query: 181 ATDGDNGTCDT 192
           ATDGDNGTCDT
Sbjct: 181 ATDGDNGTCDT 181

[Close]
BLAST of CmoCh04G006420 vs. NCBI nr
Match: KAG6600431.1 (hypothetical protein SDJN03_05664, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031082.1 hypothetical protein SDJN02_05121 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 334.3 bits (856), Expect = 6.7e-88
Identity = 177/191 (92.67%), Postives = 178/191 (93.19%), Query Frame = 0 

Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           MEKKHEISTPLNSSLIDLK SFKLAVRSLLTSCSREEFREC SGFTTVEQENLHRLFVQV
Sbjct: 1   MEKKHEISTPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTVEQENLHRLFVQV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           ITSLHGNIE          DEFESLCIETQVGRILDNV+QLLEEQDLDPLYSKKTNIMDI
Sbjct: 61  ITSLHGNIE----------DEFESLCIETQVGRILDNVQQLLEEQDLDPLYSKKTNIMDI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180
            NYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS
Sbjct: 121 ANYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180

Query: 181 ATDGDNGTCDT 192
           ATDGDNGTCDT
Sbjct: 181 ATDGDNGTCDT 181

[Close]
BLAST of CmoCh04G006420 vs. NCBI nr
Match: XP_023527503.1 (uncharacterized protein LOC111790708 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.2 bits (822), Expect = 5.9e-84
Identity = 170/191 (89.01%), Postives = 173/191 (90.58%), Query Frame = 0 

Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           MEKKHEI TPL+SSLIDL  SFKLAVRSLLTSCSREEFREC SGFTT EQENLHRLFVQV
Sbjct: 1   MEKKHEIGTPLSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           ITSLHGNIE          DEFESLCIETQVGR+LDNVEQLLEEQDLDPLYSKKTNIMDI
Sbjct: 61  ITSLHGNIE----------DEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180
            NYLSMT+KNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIR RAS
Sbjct: 121 ANYLSMTRKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRCRAS 180

Query: 181 ATDGDNGTCDT 192
            TDGDNGTCDT
Sbjct: 181 PTDGDNGTCDT 181

[Close]
BLAST of CmoCh04G006420 vs. NCBI nr
Match: XP_022982967.1 (uncharacterized protein LOC111481654 [Cucurbita maxima])

HSP 1 Score: 318.2 bits (814), Expect = 5.0e-83
Identity = 168/191 (87.96%), Postives = 173/191 (90.58%), Query Frame = 0 

Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           MEKKH+I +PLNSSLIDLK SFKLAVRSLLTSCSREEFREC SGFTT EQENLH LFVQV
Sbjct: 1   MEKKHQIDSPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           ITSLHGNIE          DEFESLCIETQVGR+LDNVEQLLEEQDLDPLYSKKTNIMDI
Sbjct: 61  ITSLHGNIE----------DEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180
            +YLS+TKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIR RAS
Sbjct: 121 ADYLSITKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRCRAS 180

Query: 181 ATDGDNGTCDT 192
           A DGDNGTCDT
Sbjct: 181 AADGDNGTCDT 181

[Close]
BLAST of CmoCh04G006420 vs. NCBI nr
Match: XP_022931290.1 (uncharacterized protein LOC111437518 isoform X1 [Cucurbita moschata] >XP_023552810.1 uncharacterized protein LOC111810334 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6577107.1 hypothetical protein SDJN03_24681, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 277.7 bits (709), Expect = 7.5e-71
Identity = 147/188 (78.19%), Postives = 160/188 (85.11%), Query Frame = 0 

Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           M+KKHEI TP++SS IDLK SFKLAVRSLLTSCSREEFREC S FTT EQE LHRLF+QV
Sbjct: 1   MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           ITSLHGNIE          DEFESLC+ETQVG +LDNVEQLLEEQDLDPLYSKKTNIM+I
Sbjct: 61  ITSLHGNIE----------DEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIMEI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180
            NYLSMTKKNEIQHLKDMLKT+EEQNRH+Q RID+L+KGV+DAS M DAVEKLR R RA 
Sbjct: 121 ANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKLRNRCRAY 178

Query: 181 ATDGDNGT 189
           A DG + T
Sbjct: 181 ADDGVSRT 178

[Close]
BLAST of CmoCh04G006420 vs. TAIR 10
Match: AT4G19350.1 (embryo defective 3006 )

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-33
Identity = 82/173 (47.40%), Postives = 111/173 (64.16%), Query Frame = 0 

Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           MEK    +    S    LK SFK  +R LLT+CS+++F +  S F+  EQE L +L+ +V
Sbjct: 1   MEKPGHETDIAGSRRTHLKKSFKSTLRHLLTACSKQDFVDIFSKFSGAEQELLFQLYTRV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           + +LH  IE          +EF+  C ETQVG ILD VE+L+EEQ LDPL+S KT++M I
Sbjct: 61  VVNLHQTIE----------EEFDEQCHETQVGPILDTVEELVEEQSLDPLFSDKTDVMAI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKL 174
              L+ +KKNEIQ L  +L+ +EEQNR  +ARI +LKK  +D SG AD +EKL
Sbjct: 121 AYDLTTSKKNEIQKLTVLLQRAEEQNRQKEARISMLKKQTQDLSGTADRIEKL 163

The following BLAST results are available for this feature:
BLAST of CmoCh04G006420 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G006420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FPA41.2e-9094.76uncharacterized protein LOC111447007 OS=Cucurbita moschata OX=3662 GN=LOC1114470... [more]
A0A6J1IY032.4e-8387.96uncharacterized protein LOC111481654 OS=Cucurbita maxima OX=3661 GN=LOC111481654... [more]
A0A6J1EZ153.6e-7178.19uncharacterized protein LOC111437518 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1C7G28.0e-7178.42uncharacterized protein LOC111008110 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A6J1J4K96.8e-7077.13uncharacterized protein LOC111483373 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of CmoCh04G006420 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022941729.12.5e-9094.76uncharacterized protein LOC111447007 [Cucurbita moschata][more]
KAG6600431.16.7e-8892.67hypothetical protein SDJN03_05664, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023527503.15.9e-8489.01uncharacterized protein LOC111790708 [Cucurbita pepo subsp. pepo][more]
XP_022982967.15.0e-8387.96uncharacterized protein LOC111481654 [Cucurbita maxima][more]
XP_022931290.17.5e-7178.19uncharacterized protein LOC111437518 isoform X1 [Cucurbita moschata] >XP_0235528... [more]
BLAST of CmoCh04G006420 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G19350.11.3e-3347.40embryo defective 3006 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 132..152
NoneNo IPR availablePANTHERPTHR15459:SF3POLYAMINE-MODULATED FACTOR 1coord: 8..171
IPR007128Nuclear MIS12/MIND complex subunit PMF1/Nnf1PANTHERPTHR15459POLYAMINE-MODULATED FACTOR 1coord: 8..171

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G006420.1CmoCh04G006420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007049 cell cycle
biological_process GO:0051301 cell division
biological_process GO:0007059 chromosome segregation
cellular_component GO:0000818 nuclear MIS12/MIND complex