CmoCh04G006260 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G006260
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 3111548 .. 3113028 (-)
RNA-Seq ExpressionCmoCh04G006260
SyntenyCmoCh04G006260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGGTCAGCGTACGAAAGGGAAACGGATAGGATCACATCAAGATGATGAGATGAGTCGGACGAGGCATTGGCTCGCAGGGAATGTGAAGGCGAAAATGGGACAGTCGGTCACACGCTTGGATGCATCCCATTCGCACGTGCCACTTCCCTCCTCCTCAGTCTCACTCCAGCGCCTCTCTGTCGAATATTCCACATGCTCGCCCTCACTCTCTCACTCTCTCTCTAGAAGCAAGCTGCAAACTCAGCCTTTCGGTGATAGATAGATGCAGCCAAGGCTCTCACGGACCGACGATTTTCTCTCTATCTTGATACTGAGCTGCATTTCTTTCAATTGGATCTAACTTCCTCTTCCAGGTCCGTGCATGTTTTGCTTTTCAGTTTTCATCACTCGGTTTGCGTTTTTCCCCCGCTTTTTCGCCGGTTAAACCTGTAATTGTTGTGTAATCTGTGAGTTGTTTTGTTGTTTGGTGACTTTGAGATGTGTGTGAGATTTTGCCTTTTTGAATCAATTGGCGACTCTGATTGGATTGTGATTGTGATTGTGATTGTGATTGTTGAATGTGACTACACTTTTCGCGGTTTTGGTTCTGAAGTGTTGTGGAATGGAAGTGTGAGATTTTGTGTCGTACTTGGAGGTTTTGGTTTTCGTTCTGTTTGCTTCTTGTTTGAGCAATTTTGAGTGAAAAGTGGTTGTAGTTCTGGTGCTATACTGCATCTATTGAATTCCATGATTCACGGCTTGCGAGGAAGAGTCGTTGCCTACTTCATAACAAAGTACTAATTTGTTGATTTTAACACTGACGCGTTTTGATATGTCCGGATAGCCAGTCTATTAATTTCATTCTATGTTTTCCATGAAGAAATTTTGAGTTTCTAACATCGATGTTGGAACTTAATAGTTGTGTTTATGGGGAACAGCCGCTTGATTTTTCCTATTTCCTTTTACAAATTCCATTATATCGTTGTTTCTGGATTCCTCTCCATCTAATTAGTGGAAAGCCGTCTATGTGAGTACTTCATCGGAAGTTTGGTGATGGCCTCTCAATTTTGCCACTATAGTGTTTCCCTGATGGAATGGGAGGTTTCGTGGCCCATCCATTGTTAGGCATTTGCTAATGAGCCATGTCGTGAATTGACATACATCAATATGTGAAAGTAGAGATGTTATCCTCTAGTTACTAATGTAGCTTTTCTATTATTGTTAAGTTGATCTAACCAGATTAAGAATAATTCCTTCTAGTCACTGATATTTATTCATTACATACATAGGGATATCGTTTCCATTATTGTTAAATTGATTTGTACTTTGTTCAAAACAACGTTTTTCCTTCTTCCTCTCTTTTTAGTCTATTTTTTCTTTTTTCTTTTTCTTTTTAATAGCCTTCTGTCTATATATTTTTGTGTTTGTAACAGCTCATTTTTAACCAGAGTGCCATATGTCCGAGGAAACTATTGCCAAGCTTGTTCTGTCAGATGA

mRNA sequence

ATGCCAGGTCAGCGTACGAAAGGGAAACGGATAGGATCACATCAAGATGATGAGATGAGTCGGACGAGGCATTGGCTCGCAGGGAATGTGAAGGCGAAAATGGGACAGTCGATAGATGCAGCCAAGGCTCTCACGGACCGACGATTTTCTCTCTATCTTGATACTGAGCTGCATTTCTTTCAATTGGATCTAACTTCCTCTTCCAGAGTGCCATATGTCCGAGGAAACTATTGCCAAGCTTGTTCTGTCAGATGA

Coding sequence (CDS)

ATGCCAGGTCAGCGTACGAAAGGGAAACGGATAGGATCACATCAAGATGATGAGATGAGTCGGACGAGGCATTGGCTCGCAGGGAATGTGAAGGCGAAAATGGGACAGTCGATAGATGCAGCCAAGGCTCTCACGGACCGACGATTTTCTCTCTATCTTGATACTGAGCTGCATTTCTTTCAATTGGATCTAACTTCCTCTTCCAGAGTGCCATATGTCCGAGGAAACTATTGCCAAGCTTGTTCTGTCAGATGA

Protein sequence

MPGQRTKGKRIGSHQDDEMSRTRHWLAGNVKAKMGQSIDAAKALTDRRFSLYLDTELHFFQLDLTSSSRVPYVRGNYCQACSVR
Homology
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BLAST of CmoCh04G006260 vs. NCBI nr
Match: KAG6600415.1 (hypothetical protein SDJN03_05648, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.2 bits (417), Expect = 2.4e-37
Identity = 83/94 (88.30%), Postives = 83/94 (88.30%), Query Frame = 0 

Query: 1  MPGQRTKGKRIGSHQDDEMSRTRHWLAGNVKAKMGQ----------SIDAAKALTDRRFS 60
          MPGQRTKGKRIGSHQDDEMSRTRHWLAGNVKAKMGQ           IDAAKALTDRRFS
Sbjct: 1  MPGQRTKGKRIGSHQDDEMSRTRHWLAGNVKAKMGQPVTRLDASHSHIDAAKALTDRRFS 60

Query: 61 LYLDTELHFFQLDLTSSSRVPYVRGNYCQACSVR 85
          LYLDTELHFFQLDLTSSSRVPYVRGNYCQACSVR
Sbjct: 61 LYLDTELHFFQLDLTSSSRVPYVRGNYCQACSVR 94

The following BLAST results are available for this feature:
BLAST of CmoCh04G006260 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G006260 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G006260 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600415.12.4e-3788.30hypothetical protein SDJN03_05648, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh04G006260 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G006260.1CmoCh04G006260.1mRNA