CmoCh04G006210 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G006210
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 3091045 .. 3091429 (-)
RNA-Seq ExpressionCmoCh04G006210
SyntenyCmoCh04G006210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATGCTGCCTATCATCTTCATCTTCCTCATCTTCACTTCACCTTCCTCAGGTACTTTCCATTATCACTTCAAATTCATAACTAATCTCAATCTAATTGCAAATGGCTCACATTCCATTGCAGGACGAGCTCATGGCCCGAGCCTCGAGCCAGGTTTAAACGAAAAACTAAACCCTTACAATCAGGTAAGACAACTATTGGTTAAGACATATATTATCGATCAATAGCTCAAACTCGGACGTTAATGTGCAGAGAATTGTGATGAGAAAGGTTTTGGGAATGGATGCAACGTTGATGGACTACCATGAACCAGGTGCTAACCCAAGCCACGAGCCAAGAAGGGGAAGCCCCGGAGGTCGAGCAAGTTTCAATCCATGA

mRNA sequence

ATGGCTTCCATGCTGCCTATCATCTTCATCTTCCTCATCTTCACTTCACCTTCCTCAGGACGAGCTCATGGCCCGAGCCTCGAGCCAGGTTTAAACGAAAAACTAAACCCTTACAATCAGAGAATTGTGATGAGAAAGGTTTTGGGAATGGATGCAACGTTGATGGACTACCATGAACCAGGTGCTAACCCAAGCCACGAGCCAAGAAGGGGAAGCCCCGGAGGTCGAGCAAGTTTCAATCCATGA

Coding sequence (CDS)

ATGGCTTCCATGCTGCCTATCATCTTCATCTTCCTCATCTTCACTTCACCTTCCTCAGGACGAGCTCATGGCCCGAGCCTCGAGCCAGGTTTAAACGAAAAACTAAACCCTTACAATCAGAGAATTGTGATGAGAAAGGTTTTGGGAATGGATGCAACGTTGATGGACTACCATGAACCAGGTGCTAACCCAAGCCACGAGCCAAGAAGGGGAAGCCCCGGAGGTCGAGCAAGTTTCAATCCATGA

Protein sequence

MASMLPIIFIFLIFTSPSSGRAHGPSLEPGLNEKLNPYNQRIVMRKVLGMDATLMDYHEPGANPSHEPRRGSPGGRASFNP
Homology
BLAST of CmoCh04G006210 vs. ExPASy TrEMBL
Match: A0A5A7TNM7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003170 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 0

Query: 26 SLEPGLNEK-LNPYNQ-RI-----VMRKVLG-MDATLMDYHEPGANPSHEPRRGSPGGR 77
          SL+ GLNE+  NP  Q RI     VMRK+LG  +  LMDY+EP ANPSHEPRRG+PGGR
Sbjct: 2  SLKEGLNEEHNNPCGQMRIGRKGKVMRKILGNEEGILMDYNEPSANPSHEPRRGTPGGR 60

BLAST of CmoCh04G006210 vs. ExPASy TrEMBL
Match: A0A6A1ULL4 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004811 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.5e-06
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 3  SMLPIIFIFLIFTSPSSGRAHGPSLEPGLNEKLNPYNQRIVMRKVLGMDATLMDYHEPGA 62
          + +P++ + LI++  SS RA G      L         RI  RK+LG   TL DY  P A
Sbjct: 12 AFIPVLLLLLIWS--SSVRADGFRDSMELTYPHGEVMIRIKARKLLGRVDTLSDYQYPSA 71

Query: 63 NPSHEPRRGSPGGRASFNP 82
          NP+HEP++GSPGG+ S NP
Sbjct: 72 NPTHEPKKGSPGGKGSNNP 88

BLAST of CmoCh04G006210 vs. ExPASy TrEMBL
Match: A0A5D3D203 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003180 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-05
Identity = 41/77 (53.25%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 8  IFIFL-IFTSPSSGRAHGPSLEPGLNEKLNPYNQRI------VMRKVLGMDATLMDYHEP 67
          IFIFL IFT P SG A   SL+ GL +  NP  Q I      V RK+LG +  L+DY  P
Sbjct: 9  IFIFLIIFTFPDSGDAGDLSLKKGL-KLSNPCGQMIVEKNNRVTRKLLGAE-VLLDYASP 68

Query: 68 GANPSHEPRRGSPGGRA 78
            N  HEPR GSPGGRA
Sbjct: 69 DHNSRHEPRFGSPGGRA 83

BLAST of CmoCh04G006210 vs. ExPASy TrEMBL
Match: A0A0A0KYH7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055320 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 40/77 (51.95%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 8  IFIFL-IFTSPSSGRAHGPSLEPGLNEKLNPYNQRI------VMRKVLGMDATLMDYHEP 67
          IFIFL IF  P+SG AH  SL+ GL +  NP  Q I      V RK+LG +A   DY  P
Sbjct: 9  IFIFLIIFMFPNSGDAHDLSLKKGL-KLSNPCGQLIVEKNNKVTRKLLGAEA-FADYASP 68

Query: 68 GANPSHEPRRGSPGGRA 78
            N  HEPR G+PGGRA
Sbjct: 69 DHNTRHEPRFGNPGGRA 83

BLAST of CmoCh04G006210 vs. NCBI nr
Match: KAG6600410.1 (hypothetical protein SDJN03_05643, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.7 bits (400), Expect = 2.1e-35
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 0

Query: 1  MASMLPIIFIFLIFTSPSSGRAHGPSLEPGLNEKLNPYNQRIVMRKVLGMDATLMDYHEP 60
          MASMLPIIF FLIFTSPSSGRAHGPSL+P LNEK NPY+QRIVMRKVLGMDATLMDYHEP
Sbjct: 1  MASMLPIIFTFLIFTSPSSGRAHGPSLQPDLNEKPNPYSQRIVMRKVLGMDATLMDYHEP 60

Query: 61 GANPSHEPRRGSPGGRASFNP 82
          GANPSHEPRRGSPGGRASFNP
Sbjct: 61 GANPSHEPRRGSPGGRASFNP 81

BLAST of CmoCh04G006210 vs. NCBI nr
Match: KAG6577122.1 (hypothetical protein SDJN03_24696, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = 0

Query: 7  IIFIFLIFTSPSSGRAHGPSLEPGLNEKLNPYNQRIVMRKVLGMDATLMDYHEPGANPSH 66
          ++   L F S  SG AHG                  V RK+LG +A LMDY+EP ANP H
Sbjct: 10 LLIFVLFFASFISGGAHG---------------NVQVTRKLLGNEAILMDYNEPSANPRH 69

Query: 67 EPRRGSPGGRASFNP 82
          EPR+GSPGGRASFNP
Sbjct: 70 EPRKGSPGGRASFNP 69

BLAST of CmoCh04G006210 vs. NCBI nr
Match: KAG6600409.1 (hypothetical protein SDJN03_05642, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 1  MASMLPIIFIFLIFTSPSSGRAHGPSLEPGLNEKLNPYNQRIV----MRKVLGMDATLMD 60
          MA+    IFIFL+F  P+SG A G  L+ GL +  NP  Q I+    +RK+LG +  L+D
Sbjct: 4  MAAFKTFIFIFLVFICPNSGDADGLRLKEGL-KLPNPCGQVIIEKKGVRKLLGAE-ELLD 63

Query: 61 YHEPGANPSHEPRRGSPGGRA 78
          Y  P  NP HEPR G+PGGRA
Sbjct: 64 YASPSHNPRHEPRVGNPGGRA 82

BLAST of CmoCh04G006210 vs. NCBI nr
Match: KAA0044962.1 (hypothetical protein E6C27_scaffold74G002680 [Cucumis melo var. makuwa] >TYK16508.1 hypothetical protein E5676_scaffold21G003170 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-06
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 0

Query: 26 SLEPGLNEK-LNPYNQ-RI-----VMRKVLG-MDATLMDYHEPGANPSHEPRRGSPGGR 77
          SL+ GLNE+  NP  Q RI     VMRK+LG  +  LMDY+EP ANPSHEPRRG+PGGR
Sbjct: 2  SLKEGLNEEHNNPCGQMRIGRKGKVMRKILGNEEGILMDYNEPSANPSHEPRRGTPGGR 60

BLAST of CmoCh04G006210 vs. NCBI nr
Match: KAB1201142.1 (hypothetical protein CJ030_MR0G004811 [Morella rubra])

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 3  SMLPIIFIFLIFTSPSSGRAHGPSLEPGLNEKLNPYNQRIVMRKVLGMDATLMDYHEPGA 62
          + +P++ + LI++  SS RA G      L         RI  RK+LG   TL DY  P A
Sbjct: 12 AFIPVLLLLLIWS--SSVRADGFRDSMELTYPHGEVMIRIKARKLLGRVDTLSDYQYPSA 71

Query: 63 NPSHEPRRGSPGGRASFNP 82
          NP+HEP++GSPGG+ S NP
Sbjct: 72 NPTHEPKKGSPGGKGSNNP 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TNM71.7e-0662.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6A1ULL46.5e-0643.04Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004811 PE=4 SV=1[more]
A0A5D3D2031.5e-0553.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KYH72.5e-0551.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055320 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6600410.12.1e-3593.83hypothetical protein SDJN03_05643, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6577122.11.3e-0850.67hypothetical protein SDJN03_24696, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6600409.11.4e-0749.38hypothetical protein SDJN03_05642, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0044962.13.6e-0662.71hypothetical protein E6C27_scaffold74G002680 [Cucumis melo var. makuwa] >TYK1650... [more]
KAB1201142.11.4e-0543.04hypothetical protein CJ030_MR0G004811 [Morella rubra][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G006210.1CmoCh04G006210.1mRNA