CmoCh04G004890 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G004890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	PXMP2/4 family protein 4-like
Location	Cmo_Chr04: 2442875 .. 2443459 (-)
RNA-Seq Expression	CmoCh04G004890
Synteny	CmoCh04G004890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTGCCTGAAAATAGGTGAAAATGGTTCTGAAATCATTGGCCGATTGAAACGAGATTTACTTCCTACAATGCTCAATGGTGTTATGTACTGGCCAGTTTGTGACTTCATCACATTCAGATTCGTCCCTGTTCATCTTCAAGTATGCCCTGTTCTTTAATCTTTGTCCATCTGATTCTCTTCCCTTCTCTTGTGGTTTTGAGTGTATGTTTGGTTTTGCAGCCGTTGGTCAGCAATTCGTTCTCATACGCGTGGACTGTTTACATGACATACATGGCAAGCCTCGAGAAAGCTGCCTCATGATCCGATCCCAATGGCTGAGCAATTTGGGATTTTGACAGTCCCTTTTGCAGGCTGATGCAGAAACTGGCAGCTTATTAGCACAGGAGGGAGAAAAATAGAGAGATTCTTTGTTCAGTTCATATAATTGTACAGAATTTCATGAGGGAACTTTCTGGGATTCTGTTTAGCAGCTACTTGGTGTACATTCTTCTTGTTTTTATTTAGTAATGAAGACCCATGTATTATCATTTATGTTATCACATAGCCTTTCAGATAATTGAGATTCTAGTTCGATCTTAAA

mRNA sequence

ATGATGTGCCTGAAAATAGGTGAAAATGGTTCTGAAATCATTGGCCGATTGAAACGAGATTTACTTCCTACAATGCTCAATGGTGTTATGTACTGGCCAGTTTGTGACTTCATCACATTCAGATTCGTCCCTGTTCATCTTCAACCGTTGGTCAGCAATTCGTTCTCATACGCGTGGACTGTTTACATGACATACATGGCAAGCCTCGAGAAAGCTGCCTCATGATCCGATCCCAATGGCTGAGCAATTTGGGATTTTGACAGTCCCTTTTGCAGGCTGATGCAGAAACTGGCAGCTTATTAGCACAGGAGGGAGAAAAATAGAGAGATTCTTTGTTCAGTTCATATAATTGTACAGAATTTCATGAGGGAACTTTCTGGGATTCTGTTTAGCAGCTACTTGGTGTACATTCTTCTTGTTTTTATTTAGTAATGAAGACCCATGTATTATCATTTATGTTATCACATAGCCTTTCAGATAATTGAGATTCTAGTTCGATCTTAAA

Coding sequence (CDS)

ATGATGTGCCTGAAAATAGGTGAAAATGGTTCTGAAATCATTGGCCGATTGAAACGAGATTTACTTCCTACAATGCTCAATGGTGTTATGTACTGGCCAGTTTGTGACTTCATCACATTCAGATTCGTCCCTGTTCATCTTCAACCGTTGGTCAGCAATTCGTTCTCATACGCGTGGACTGTTTACATGACATACATGGCAAGCCTCGAGAAAGCTGCCTCATGA

Protein sequence

MMCLKIGENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYMASLEKAAS

Homology

[Close]

BLAST of CmoCh04G004890 vs. ExPASy Swiss-Prot
Match: Q54GD8 (PXMP2/4 family protein 3 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290223 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 21/59 (35.59%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 13  IIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYMASLEK 72
           I+ +L  DL PT+      WP+   I FRFVP HL+ L  N   + W +Y++ +A+ ++
Sbjct: 125 ILFKLYFDLFPTLKASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILATKKR 183

[Close]

BLAST of CmoCh04G004890 vs. ExPASy TrEMBL
Match: A0A6J1FSU4 (PXMP2/4 family protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111447830 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 7   GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 66
           GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM
Sbjct: 189 GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 248

Query: 67  ASLEKAAS 75
           ASLEKAAS
Sbjct: 249 ASLEKAAS 256

[Close]

BLAST of CmoCh04G004890 vs. ExPASy TrEMBL
Match: A0A6J1JW67 (PXMP2/4 family protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111488902 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.6e-30
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 7   GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 66
           GENGSEIIGRLKRDLLPTMLNGVMYWP CDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM
Sbjct: 189 GENGSEIIGRLKRDLLPTMLNGVMYWPACDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 248

Query: 67  ASLEKAA 74
           ASLEKAA
Sbjct: 249 ASLEKAA 255

[Close]

BLAST of CmoCh04G004890 vs. ExPASy TrEMBL
Match: A0A118K6L5 (Mpv17/PMP22 OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_010769 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.0e-29
Identity = 60/68 (88.24%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 7   GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 66
           GENG+EI+GRLKRDL+PTM+NGVMYWPVCDFITFRF+PVHLQPLVSNSF+Y WTVYMTYM
Sbjct: 190 GENGAEIVGRLKRDLIPTMINGVMYWPVCDFITFRFIPVHLQPLVSNSFAYIWTVYMTYM 249

Query: 67  ASLEKAAS 75
           ASLEKAA+
Sbjct: 250 ASLEKAAT 257

[Close]

BLAST of CmoCh04G004890 vs. ExPASy TrEMBL
Match: A0A5D3E190 (PXMP2/4 family protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00770 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 7   GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 66
           GENG+EII RLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQ LVSNSFSY WTVYMTYM
Sbjct: 190 GENGAEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSFSYVWTVYMTYM 249

Query: 67  ASLEKAAS 75
           ASLEKA S
Sbjct: 250 ASLEKAVS 257

[Close]

BLAST of CmoCh04G004890 vs. ExPASy TrEMBL
Match: A0A1S3BY02 (PXMP2/4 family protein 4 OS=Cucumis melo OX=3656 GN=LOC103494798 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 7   GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 66
           GENG+EII RLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQ LVSNSFSY WTVYMTYM
Sbjct: 224 GENGAEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSFSYVWTVYMTYM 283

Query: 67  ASLEKAAS 75
           ASLEKA S
Sbjct: 284 ASLEKAVS 291

[Close]

BLAST of CmoCh04G004890 vs. NCBI nr
Match: XP_023525272.1 (PXMP2/4 family protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.1 bits (362), Expect = 5.0e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 7   GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 66
           GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM
Sbjct: 189 GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 248

Query: 67  ASLEKAAS 75
           ASLEKAAS
Sbjct: 249 ASLEKAAS 256

[Close]

BLAST of CmoCh04G004890 vs. NCBI nr
Match: XP_022942949.1 (PXMP2/4 family protein 4-like [Cucurbita moschata])

HSP 1 Score: 144.1 bits (362), Expect = 5.0e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 7   GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 66
           GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM
Sbjct: 189 GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 248

Query: 67  ASLEKAAS 75
           ASLEKAAS
Sbjct: 249 ASLEKAAS 256

[Close]

BLAST of CmoCh04G004890 vs. NCBI nr
Match: KAG6600293.1 (PXMP2/4 family protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030953.1 PXMP2/4 family protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 7   GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 66
           GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM
Sbjct: 189 GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 248

Query: 67  ASLEKAAS 75
           ASLEKAA+
Sbjct: 249 ASLEKAAA 256

[Close]

BLAST of CmoCh04G004890 vs. NCBI nr
Match: XP_022992610.1 (PXMP2/4 family protein 4-like [Cucurbita maxima])

HSP 1 Score: 141.4 bits (355), Expect = 3.2e-30
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 7   GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 66
           GENGSEIIGRLKRDLLPTMLNGVMYWP CDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM
Sbjct: 189 GENGSEIIGRLKRDLLPTMLNGVMYWPACDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 248

Query: 67  ASLEKAA 74
           ASLEKAA
Sbjct: 249 ASLEKAA 255

[Close]

BLAST of CmoCh04G004890 vs. NCBI nr
Match: XP_024966880.1 (PXMP2/4 family protein 4-like [Cynara cardunculus var. scolymus] >KVI10830.1 Mpv17/PMP22 [Cynara cardunculus var. scolymus])

HSP 1 Score: 136.3 bits (342), Expect = 1.0e-28
Identity = 60/68 (88.24%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 7   GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 66
           GENG+EI+GRLKRDL+PTM+NGVMYWPVCDFITFRF+PVHLQPLVSNSF+Y WTVYMTYM
Sbjct: 190 GENGAEIVGRLKRDLIPTMINGVMYWPVCDFITFRFIPVHLQPLVSNSFAYIWTVYMTYM 249

Query: 67  ASLEKAAS 75
           ASLEKAA+
Sbjct: 250 ASLEKAAT 257

[Close]

BLAST of CmoCh04G004890 vs. TAIR 10
Match: AT4G33905.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 120.9 bits (302), Expect = 4.2e-28
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 7   GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 66
           GENGSEI+ RLKRDLLPTMLNGVMYWP+CDFITF+F PV+LQPLVSNSFSY WT+Y+TYM
Sbjct: 191 GENGSEIVARLKRDLLPTMLNGVMYWPLCDFITFKFCPVYLQPLVSNSFSYLWTIYITYM 250

Query: 67  AS 69
           AS
Sbjct: 251 AS 252

[Close]

BLAST of CmoCh04G004890 vs. TAIR 10
Match: AT2G14860.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-27
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 7   GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 66
           GE GS I+ RLKRDLLP + NGVMYWP+CDFITFRF PVHLQPLVSNSFSY WT+YMTYM
Sbjct: 182 GERGSVILARLKRDLLPALFNGVMYWPLCDFITFRFFPVHLQPLVSNSFSYVWTIYMTYM 241

Query: 67  ASLEK 72
           A+ EK
Sbjct: 242 ANREK 246

[Close]

BLAST of CmoCh04G004890 vs. TAIR 10
Match: AT5G43140.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 110.2 bits (274), Expect = 7.4e-25
Identity = 46/68 (67.65%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 7   GENGSEIIGRLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQPLVSNSFSYAWTVYMTYM 66
           GEN  EI+ RLKRDLLPT+ NG+MYWPVCDF+TF++VPVHLQPL+++S +Y WT+Y+TYM
Sbjct: 187 GENSEEIVARLKRDLLPTLKNGLMYWPVCDFVTFKYVPVHLQPLMNSSCAYIWTIYLTYM 246

Query: 67  ASLEKAAS 75
           A+  KA S
Sbjct: 247 ANQTKADS 254

The following BLAST results are available for this feature:

BLAST of CmoCh04G004890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54GD8	2.2e-05	35.59	PXMP2/4 family protein 3 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290223 PE...	[more]

BLAST of CmoCh04G004890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FSU4	2.4e-31	100.00	PXMP2/4 family protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111447830 PE=3...	[more]
A0A6J1JW67	1.6e-30	98.51	PXMP2/4 family protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111488902 PE=3 S...	[more]
A0A118K6L5	5.0e-29	88.24	Mpv17/PMP22 OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_010769 PE=3 SV=...	[more]
A0A5D3E190	1.9e-28	92.65	PXMP2/4 family protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BY02	1.9e-28	92.65	PXMP2/4 family protein 4 OS=Cucumis melo OX=3656 GN=LOC103494798 PE=3 SV=1	[more]

BLAST of CmoCh04G004890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525272.1	5.0e-31	100.00	PXMP2/4 family protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022942949.1	5.0e-31	100.00	PXMP2/4 family protein 4-like [Cucurbita moschata]	[more]
KAG6600293.1	1.1e-30	98.53	PXMP2/4 family protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG70...	[more]
XP_022992610.1	3.2e-30	98.51	PXMP2/4 family protein 4-like [Cucurbita maxima]	[more]
XP_024966880.1	1.0e-28	88.24	PXMP2/4 family protein 4-like [Cynara cardunculus var. scolymus] >KVI10830.1 Mpv...	[more]

BLAST of CmoCh04G004890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33905.1	4.2e-28	85.48	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT2G14860.1	2.1e-27	80.00	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT5G43140.1	7.4e-25	67.65	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007248	Mpv17/PMP22	PFAM	PF04117	Mpv17_PMP22	coord: 7..63 e-value: 1.9E-17 score: 63.2
IPR007248	Mpv17/PMP22	PANTHER	PTHR11266	PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17	coord: 7..73
None	No IPR available	PANTHER	PTHR11266:SF18	OS12G0508100 PROTEIN	coord: 7..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G004890.1	CmoCh04G004890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane