CmoCh04G004450 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G004450
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 2202935 .. 2203769 (-)
RNA-Seq ExpressionCmoCh04G004450
SyntenyCmoCh04G004450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTAGAGAAGTGGGGAGTTTGTGCCACGCCATGGCTGAAACAACACACTTGGGAGCCTCAACAATGGAAGCGAAGTTGGTGGTATGGTAAGGGATGGAAGTTAGGAAGGAATGTAGAAGAAGATGATGTTAGAATTGGGAAGTTCTATTATATACTCTTTTGTGTACACATCACTATTACACTTGTATATACATATATATACATATGTTTCAATGTGAATCAATGTCCAATTTTTCGATTCTAATGTGACATGACAACTTCATTCTTCCATCCTTTCCTATATATTCGTACCAACCCATCGTTTACTTTTACTATATGCTGGGTTTTTCCGACCTGTTCGTCTTGCCCATGAATCTAGGACAATTGTTTGTTCATTCTATTAACTATGGGTCGCCTTTTGGGGCTGTTCTGTAAATAAATATGGGTCCGAAGATGAGCTACAAGAGTCCATTCCCTTCTGCTGAATACTCGATGATGATAAGCTGTGAAATAAAGGAATCTCAAGAGCAGGAACAGCAGCCCCATTTTGTTTTGTGGATATGAACAGCGCCGCCCCTCTCTTTGATCTTTTTGCCGATGGAAGGAATCGGCATCTCCATTGCTCACGCCATGCACGTGCGAGAAGCATGGATGAAGATGACCTATAAAAAAGTAGGAGAAAAAGATGACAAAAATCCATTTCAGCTTTTAACAGAGGCTTTGGTTTTCTTTTCCACATTGGAAAGAAACCCCATGATATCACTTGATGACAACAGCGAAGTTTGTACAAGAAGCAACTCGACTTGATTCCTGTTGTCTGTAATAATAATAAGCAGCAGCAGCCACCCTAG

mRNA sequence

ATGGGGTTAGAGAAGTGGGGAGTTTGTGCCACGCCATGGCTGAAACAACACACTTGGGAGCCTCAACAATGGAAGCGAAGTTGGTGGTATGGTAAGGGATGGAAGTTAGGAAGGAATGTAGAAGAAGATGATGTTAGAATTGGGAAGTTCTATTATATACTCTTTTGTGTACACATCACTATTACACTTCGAAGTTTGTACAAGAAGCAACTCGACTTGATTCCTGTTGTCTGTAATAATAATAAGCAGCAGCAGCCACCCTAG

Coding sequence (CDS)

ATGGGGTTAGAGAAGTGGGGAGTTTGTGCCACGCCATGGCTGAAACAACACACTTGGGAGCCTCAACAATGGAAGCGAAGTTGGTGGTATGGTAAGGGATGGAAGTTAGGAAGGAATGTAGAAGAAGATGATGTTAGAATTGGGAAGTTCTATTATATACTCTTTTGTGTACACATCACTATTACACTTCGAAGTTTGTACAAGAAGCAACTCGACTTGATTCCTGTTGTCTGTAATAATAATAAGCAGCAGCAGCCACCCTAG

Protein sequence

MGLEKWGVCATPWLKQHTWEPQQWKRSWWYGKGWKLGRNVEEDDVRIGKFYYILFCVHITITLRSLYKKQLDLIPVVCNNNKQQQPP
Homology
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BLAST of CmoCh04G004450 vs. NCBI nr
Match: KAG6600256.1 (Transcription factor GTE2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-21
Identity = 56/87 (64.37%), Postives = 62/87 (71.26%), Query Frame = 0 

Query: 1   MGLEKWGVCATPWLKQHTWEPQQWKRSWWYGKGWKL-GRNVEEDDVRIGKFYYILFC-VH 60
           MGLEKWGVCATPWLKQHTWEPQQWKRSWWY     L    +E   + I    ++    + 
Sbjct: 553 MGLEKWGVCATPWLKQHTWEPQQWKRSWWYAPPLSLIFLPMEGIGISIAHAMHVREAWMK 612

Query: 61  ITITLRSLYKKQLDLIPVVCNNNKQQQ 86
           +T   RSLYKKQLDLIPVVCNNNKQQQ
Sbjct: 613 MTYKKRSLYKKQLDLIPVVCNNNKQQQ 639

The following BLAST results are available for this feature:
BLAST of CmoCh04G004450 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G004450 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G004450 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600256.11.9e-2164.37Transcription factor GTE2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmoCh04G004450 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G004450.1CmoCh04G004450.1mRNA