CmoCh04G004290 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G004290
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr04: 2129384 .. 2130554 (+)
RNA-Seq Expression	CmoCh04G004290
Synteny	CmoCh04G004290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGGAATCCGTAACCTCTCCAGATCTTCACCTTTCATGGCTACACAAACAATTCCTGTTCCATGTTTTACAATGAAAGCCATAGCCTCAGGAGTAGCAGCTTGTGCTGCCATTATCAAATCTCCCTCGTTTTCTCTATCTTCATCATCAACAACAAGCACCATCTGCAACATCACTGTTCTTGTTACTAAGATGAAAAGGAAAAAAAAAAACAAGAAAAAGAAATGCTCCATGTCATATTGGACAACCTTTCCCTGTCGAATATCTTCGACTGCATCAGCAACAGCAGCGAAACCTGCGGTGGGACGATCAAAATCATATTCATCTTCACCAACGGGAAAACTATTTCGAGTAGAAGCTGAATCTAGCTGATTTCCAAGGACGATATCGTTCGAAACAACAGCATTGCCATTGGAAGAAGACAGAACTCCTCCTTCACCAGATATCAACGTAGCTCTTGGTTGGACTGAACCCCTGGTGCCTAAAAACAGTTTACTAGCTTTACAGCTCGAGGTTAACTCCGAAACGAGGCTAGTTGCAACGTACGGTTTAACATGATTGATTCCACCAAAAGACTGCAAGTCTTTGAATCTTCTACATCATACAAAAATCAGGCAATTTGTTTAGAGAAAATTCATAGAAAACATCTAACATACTTCATTTACTTAAAGAATTCCTACCGGAAACACATTCTAATCAATGTTCTTAAGCTTCAATAGTAAAACTTAATAGCTAGATTTAGTTTTTTTGTGGAATGTAGAGCAAAAATTCGTGCCAAAAGCCTGTTAAACTCAAATAACAATAGCTAATCCAAATGGGATCAAGAATTTAATGCATAACATGATGTTATTTCTTCATTTCTCTTAAATCAATTGGTAGTAAAATGCGAGATGTTCATATGACGATGCGAAAATTTCGACTGTTCTAACAGAGAAGAATACAGAGGCCTCAGATGATCATACGAGACTTCGAAGTAAGTAAGATCCAAACAAATAAACAGTGAAATTTCATCATCAAACTTGATCTCAACCGATTTGGATATCAGAATCATGAAAATGAAGCAAAATCGAGGTATAAAACGCAGCAATCCATCAAAACGAGAAACCCAGAAACGAAAATCGCATATGATTCGAACAGATTACTCTCAAACAAGACGATAATTGAATGA

mRNA sequence

ATGAGCGGAATCCGTAACCTCTCCAGATCTTCACCTTTCATGGCTACACAAACAATTCCTGTTCCATGTTTTACAATGAAAGCCATAGCCTCAGGAGTAGCAGCTTGTGCTGCCATTATCAAATCTCCCTCGTTTTCTCTATCTTCATCATCAACAACAAGCACCATCTGCAACATCACTGTTCTTGTTACTAAGATGAAAAGGAAAAAAAAAAACAAGAAAAAGAAATGCTCCATGTCATATTGGACAACCTTTCCCTGTCGAATATCTTCGACTGCATCAGCAACAGCAGCGAAACCTGCGAGAAGAATACAGAGGCCTCAGATGATCATACGAGACTTCGAAAATCATGAAAATGAAGCAAAATCGAGGTATAAAACGCAGCAATCCATCAAAACGAGAAACCCAGAAACGAAAATCGCATATGATTCGAACAGATTACTCTCAAACAAGACGATAATTGAATGA

Coding sequence (CDS)

ATGAGCGGAATCCGTAACCTCTCCAGATCTTCACCTTTCATGGCTACACAAACAATTCCTGTTCCATGTTTTACAATGAAAGCCATAGCCTCAGGAGTAGCAGCTTGTGCTGCCATTATCAAATCTCCCTCGTTTTCTCTATCTTCATCATCAACAACAAGCACCATCTGCAACATCACTGTTCTTGTTACTAAGATGAAAAGGAAAAAAAAAAACAAGAAAAAGAAATGCTCCATGTCATATTGGACAACCTTTCCCTGTCGAATATCTTCGACTGCATCAGCAACAGCAGCGAAACCTGCGAGAAGAATACAGAGGCCTCAGATGATCATACGAGACTTCGAAAATCATGAAAATGAAGCAAAATCGAGGTATAAAACGCAGCAATCCATCAAAACGAGAAACCCAGAAACGAAAATCGCATATGATTCGAACAGATTACTCTCAAACAAGACGATAATTGAATGA

Protein sequence

MSGIRNLSRSSPFMATQTIPVPCFTMKAIASGVAACAAIIKSPSFSLSSSSTTSTICNITVLVTKMKRKKKNKKKKCSMSYWTTFPCRISSTASATAAKPARRIQRPQMIIRDFENHENEAKSRYKTQQSIKTRNPETKIAYDSNRLLSNKTIIE

Homology

[Close]

BLAST of CmoCh04G004290 vs. ExPASy TrEMBL
Match: A0A7C9AS81 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-10
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 3   GIRNLSRSSPFMATQTIPVPCFTMKAIASGVAACAAIIKSPSFSLSSSSTTSTI 57
           GI +LSRSS FM TQT+PVPCFT KAIASGVA+ AAI  SPSFSLSSSSTT TI
Sbjct: 122 GICSLSRSSSFMLTQTMPVPCFTKKAIASGVASSAAITISPSFSLSSSSTTMTI 175

[Close]

BLAST of CmoCh04G004290 vs. ExPASy TrEMBL
Match: A0A0A9D1E5 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 55/131 (41.98%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 1   MSGIRNLSRSSPFMATQTIPVPCFTMKAIASGVAACAAIIKSPSFSLSSSSTTSTICNIT 60
           + G  NLSRSS FM T TIPVPC T KAIASGV   AA ++SPSFSL SSSTT       
Sbjct: 39  IKGRANLSRSSSFMLTHTIPVPCLTTKAIASGVTKEAANMRSPSFSLDSSSTTI------ 98

Query: 61  VLVTKMKRKKKNKKKKCSMSYWTTFPCRISSTASATAAKPARRIQRPQMIIRDFENHENE 120
                                 T+FPCR+SS ASA  AKP+  + +   +     + EN 
Sbjct: 99  ----------------------TSFPCRMSSMASAMDAKPSVGLSKSSSV--SVSSSENL 139

Query: 121 AKSRYKTQQSI 132
           + +R K  + I
Sbjct: 159 SATRAKLAERI 139

[Close]

BLAST of CmoCh04G004290 vs. ExPASy TrEMBL
Match: A0A0A9VI93 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-09
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 3   GIRNLSRSSPFMATQTIPVPCFTMKAIASGVAACAAIIKSPSFSLSSSSTTST 56
           G  +LSRSS FM TQTIPVPC TMKAIASGV   AAII+SPSFSLSSSSTT T
Sbjct: 105 GSCSLSRSSSFMLTQTIPVPCLTMKAIASGVTFDAAIIRSPSFSLSSSSTTIT 157

[Close]

BLAST of CmoCh04G004290 vs. ExPASy TrEMBL
Match: A0A0A9RNB8 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.4e-09
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 3   GIRNLSRSSPFMATQTIPVPCFTMKAIASGVAACAAIIKSPSFSLSSSSTTST 56
           G  +LSRSS F+ TQTIPVPC TMKAIASGV   AAII+SPSFSLSSSSTT T
Sbjct: 105 GSCSLSRSSSFILTQTIPVPCLTMKAIASGVTFDAAIIRSPSFSLSSSSTTMT 157

[Close]

BLAST of CmoCh04G004290 vs. ExPASy TrEMBL
Match: A0A2P2J0X3 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06
Identity = 46/91 (50.55%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 14  MATQTIPVPCFTMKAIASGVAACAAIIKSPSFSLSSSSTTSTI--CNITVLVTKMKRKKK 73
           M TQTIPVPCFT+KAIAS VA CAAI++SPSFS SSSSTT+TI    I+ + + M     
Sbjct: 1   MLTQTIPVPCFTIKAIASCVANCAAIMRSPSFSRSSSSTTTTIFPWRISSIASDMGENPS 60

Query: 74  --NKKKKCSMSYWTTFPCRISSTASATAAKP 101
               K   S+S    F  R  S   A  A P
Sbjct: 61  VGRSKSNSSLSMGKPFGARTPSVGRAPDAIP 91

The following BLAST results are available for this feature:

BLAST of CmoCh04G004290 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G004290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7C9AS81	3.8e-10	79.63	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]
A0A0A9D1E5	1.1e-09	41.98	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9VI93	2.4e-09	79.25	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9RNB8	5.4e-09	77.36	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A2P2J0X3	3.3e-06	50.55	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of CmoCh04G004290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmoCh04G004290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G004290.1	CmoCh04G004290.1	mRNA