CmoCh04G003910 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G003910
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cyclin
Location	Cmo_Chr04: 1929263 .. 1930362 (+)
RNA-Seq Expression	CmoCh04G003910
Synteny	CmoCh04G003910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAATACCTGAGCTGTACTTATTCTCCACCCTGTTGATAACTCAGAGGCAGCTGCAAGGCTTTTCAAAAGCTCAACAACTTGGAGCTCCATCAATGGCAGACTTAGATCACCATAATCAAATGGCCGTTCCAATTCCCAAAGTCATCACTTTCCTGTCCTCCCTTTTGCAGAGGGTGTCGGAGTCCAATGATCAAAGCCATGAGCTTCATAGCGCGGCTAAAGTTTCAGCCTTTCATGGCTTGACAAAGCCCACCATTTCCATCCAAACCTACTTGGAGAGGATATTTAAGTACGCTAATTGCAGCCCCAGCTGCTTCGTCGTGGCTTATGTTTATCTCGATCGGCTCGCTCAGCGCCACCCTTCTTTGCCCATTGATTCCTTCAATGTTCATCGCCTCCTCATTACCAGTGTTCTTGTTTCCGCCAAGTTCTTGGATGACTTGTAAGCTTTTTTTTTATTATTATTTATAATTATGATTTTTTTTTTTAATTCGTTCAATTGGGTTCTTACAATTCCTCGTCTGCTTGATTTTCGGATTGAATTCGGTCTCGGGTCTCGGGTCTCGGGTTTCGATTCTTCTTCTTCTTCTTAGTGTTCGATAGAATATTAAATTTTTATTTTATTTCTTGATATTTTTATTTTCAGGTGTTACAATAATGCCTACTATGCAAAAGTAGGTGGAATTAGCACGGTGGAGATGAACCTTCTTGAAATCGATTTCTTATTTGGTTTAGGGTTCCAACTTAACGTGACACTGAACACTTTTCACACTTACTGTTCTTATCTCCGAGCAGAAGTGTTATCGACGCAATCCAATCTTCCGATTCCCATAAAATTTTATTCCTTTCCCGAAGATGAAGCGTCGCATAAAAAACGATTGATAGCTTAAATCACATGAAATGATCGATTAGATGCGATCGTGGCAAGGCACACGGGCTCTCCCGGTTAGTCGTTAAATTAGCTAGAAGTTTTTGAGGTGGGGATGTGGACCTTTATTGGGCTTAAATGTGGGCTTTTTTTGGGCCCAAGAAGCCACCCTAATTTTTGCCTCTCTTGTAGTTGGACATTTTTGCCCTCTATGTCTATTGCGTAG

mRNA sequence

AAAAAAAAATACCTGAGCTGTACTTATTCTCCACCCTGTTGATAACTCAGAGGCAGCTGCAAGGCTTTTCAAAAGCTCAACAACTTGGAGCTCCATCAATGGCAGACTTAGATCACCATAATCAAATGGCCGTTCCAATTCCCAAAGTCATCACTTTCCTGTCCTCCCTTTTGCAGAGGGTGTCGGAGTCCAATGATCAAAGCCATGAGCTTCATAGCGCGGCTAAAGTTTCAGCCTTTCATGGCTTGACAAAGCCCACCATTTCCATCCAAACCTACTTGGAGAGGATATTTAAGTACGCTAATTGCAGCCCCAGCTGCTTCGTCGTGGCTTATGTTTATCTCGATCGGCTCGCTCAGCGCCACCCTTCTTTGCCCATTGATTCCTTCAATGTTCATCGCCTCCTCATTACCAGTGTTCTTGTTTCCGCCAAGTTCTTGGATGACTTGTGTTACAATAATGCCTACTATGCAAAAGTAGGTGGAATTAGCACGGTGGAGATGAACCTTCTTGAAATCGATTTCTTATTTGGTTTAGGGTTCCAACTTAACGTGACACTGAACACTTTTCACACTTACTGTTCTTATCTCCGAGCAGAAGTGTTATCGACGCAATCCAATCTTCCGATTCCCATAAAATTTTATTCCTTTCCCGAAGATGAAGCGTCGCATAAAAAACGATTGATAGCTTAAATCACATGAAATGATCGATTAGATGCGATCGTGGCAAGGCACACGGGCTCTCCCGGTTAGTCGTTAAATTAGCTAGAAGTTTTTGAGGTGGGGATGTGGACCTTTATTGGGCTTAAATGTGGGCTTTTTTTGGGCCCAAGAAGCCACCCTAATTTTTGCCTCTCTTGTAGTTGGACATTTTTGCCCTCTATGTCTATTGCGTAG

Coding sequence (CDS)

ATGGCAGACTTAGATCACCATAATCAAATGGCCGTTCCAATTCCCAAAGTCATCACTTTCCTGTCCTCCCTTTTGCAGAGGGTGTCGGAGTCCAATGATCAAAGCCATGAGCTTCATAGCGCGGCTAAAGTTTCAGCCTTTCATGGCTTGACAAAGCCCACCATTTCCATCCAAACCTACTTGGAGAGGATATTTAAGTACGCTAATTGCAGCCCCAGCTGCTTCGTCGTGGCTTATGTTTATCTCGATCGGCTCGCTCAGCGCCACCCTTCTTTGCCCATTGATTCCTTCAATGTTCATCGCCTCCTCATTACCAGTGTTCTTGTTTCCGCCAAGTTCTTGGATGACTTGTGTTACAATAATGCCTACTATGCAAAAGTAGGTGGAATTAGCACGGTGGAGATGAACCTTCTTGAAATCGATTTCTTATTTGGTTTAGGGTTCCAACTTAACGTGACACTGAACACTTTTCACACTTACTGTTCTTATCTCCGAGCAGAAGTGTTATCGACGCAATCCAATCTTCCGATTCCCATAAAATTTTATTCCTTTCCCGAAGATGAAGCGTCGCATAAAAAACGATTGATAGCTTAA

Protein sequence

MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIPIKFYSFPEDEASHKKRLIA

Homology

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BLAST of CmoCh04G003910 vs. ExPASy Swiss-Prot
Match: O80513 (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.2e-64
Identity = 128/199 (64.32%), Postives = 158/199 (79.40%), Query Frame = 0


Query: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHS-AAKVSAFHGLTKPTISIQT 60
           MA+L++ + M+    K+I FLSSLL+RV+ESND +  + + + +VS FHGL++PTI+IQ+
Sbjct: 1   MAELENPSVMS----KLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQS 60

Query: 61  YLERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCY 120
           YLERIFKYANCSPSCFVVAYVYLDR   R PSLPI+SFNVHRLLITSV+V+AKFLDDL Y
Sbjct: 61  YLERIFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYY 120

Query: 121 NNAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQS----NL 180
           NNAYYAKVGGIST EMN LE+DFLFGLGF+LNVT NTF+ Y SYL+ E+   Q      +
Sbjct: 121 NNAYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQPLSLVVV 180

Query: 181 PIPIKFYSFPEDEASHKKR 195
           P      +F +DEASH+K+
Sbjct: 181 PSSRSLITFNDDEASHQKQ 195

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BLAST of CmoCh04G003910 vs. ExPASy Swiss-Prot
Match: Q9LY16 (Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.5e-58
Identity = 111/174 (63.79%), Postives = 142/174 (81.61%), Query Frame = 0


Query: 7   HNQ--MAVPIPKVITFLSSLLQRVSESNDQ-SHELHSAAKVSAFHGLTKPTISIQTYLER 66
           H+Q  MA  +P VIT +SSLLQRVSE+ND  S       ++SAF+ +TKP+ISI++Y+ER
Sbjct: 11  HDQEPMAEIMPNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMER 70

Query: 67  IFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAY 126
           IFKYA+CS SC++VAY+YLDR  Q+ P LPIDS NVHRL+ITSVLVSAKF+DDLCYNNA+
Sbjct: 71  IFKYADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAF 130

Query: 127 YAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPI 178
           YAKVGGI+T EMNLLE+DFLFG+GFQLNVT++T++ YCS L+ E++      P+
Sbjct: 131 YAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVMRTMYSPL 184

[Close]

BLAST of CmoCh04G003910 vs. ExPASy Swiss-Prot
Match: Q9FKF6 (Cyclin-U4-3 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-3 PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.0e-54
Identity = 104/164 (63.41%), Postives = 133/164 (81.10%), Query Frame = 0


Query: 5   DHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERI 64
           D    +A  +P V+T +S LLQRVSE+ND    L    K S+F G+TKP+ISI++YLERI
Sbjct: 13  DLQEPLAEIMPSVLTAMSYLLQRVSETND---NLSQKQKPSSFTGVTKPSISIRSYLERI 72

Query: 65  FKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYY 124
           F+YANCS SC++VAY+YLDR  ++ P LPI+SFNVHRL+ITSVLVSAKF+DDL YNN YY
Sbjct: 73  FEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYY 132

Query: 125 AKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEV 169
           AKVGGIS  EMN+LE+DFLFG+GF+LNVT++TF+ YC +L+ E+
Sbjct: 133 AKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREM 173

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BLAST of CmoCh04G003910 vs. ExPASy Swiss-Prot
Match: Q7XC35 (Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 8.9e-54
Identity = 102/164 (62.20%), Postives = 129/164 (78.66%), Query Frame = 0


Query: 9   QMAVPIPKVITFLSSLLQRVSESNDQSHEL----HSAAKVSAFHGLTKPTISIQTYLERI 68
           ++A  +P+V+  LSSLLQRV+E ND +         AA VSAF GLTKP ISI  YLERI
Sbjct: 5   EVAEAVPRVVAILSSLLQRVAERNDAAAAAAAVGEEAAAVSAFQGLTKPAISIGGYLERI 64

Query: 69  FKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYY 128
           F++ANCSPSC+VVAY+YLDR  +R P+L +DSFNVHRLLITSVL + KF+DD+CYNNAY+
Sbjct: 65  FRFANCSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFVDDICYNNAYF 124

Query: 129 AKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEV 169
           A+VGGIS +EMN LE+DFLFG+ F LNVT   F +YC+ L++E+
Sbjct: 125 ARVGGISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEM 168

[Close]

BLAST of CmoCh04G003910 vs. ExPASy Swiss-Prot
Match: Q9LJ45 (Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-37
Identity = 71/156 (45.51%), Postives = 107/156 (68.59%), Query Frame = 0


Query: 15  PKVITFLSSLLQRVSESND--QSHELHSAAKVSAFHGLTKPTISIQTYLERIFKYANCSP 74
           P+V+T +S +++++   N+            + AFHG+  P+ISI  YLERI+KY  CSP
Sbjct: 25  PRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEAFHGVRAPSISIAKYLERIYKYTKCSP 84

Query: 75  SCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKVGGIST 134
           +CFVV YVY+DRLA +HP   + S NVHRLL+T V+++AK LDD+ YNN +YA+VGG+S 
Sbjct: 85  ACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEFYARVGGVSN 144

Query: 135 VEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEV 169
            ++N +E++ LF L F++ V+   F +YC +L  E+
Sbjct: 145 ADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEM 180

[Close]

BLAST of CmoCh04G003910 vs. ExPASy TrEMBL
Match: A0A6J1FSU2 (Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111446976 PE=3 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 4.2e-107
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY
Sbjct: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120

Query: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIPIK 180
           NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIPIK
Sbjct: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIPIK 180

Query: 181 FYSFPEDEASHKKRLIA 198
           FYSFPEDEASHKKRLIA
Sbjct: 181 FYSFPEDEASHKKRLIA 197

[Close]

BLAST of CmoCh04G003910 vs. ExPASy TrEMBL
Match: A0A6J1JX61 (Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111489131 PE=3 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.4e-104
Identity = 192/197 (97.46%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADLDH NQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY
Sbjct: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDRL QRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120

Query: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIPIK 180
           NAYYAKVGGIST+EMNLLEIDFLFGLGFQLNVT NTFHTYCSYLRAEVLSTQSNLPIPIK
Sbjct: 121 NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEVLSTQSNLPIPIK 180

Query: 181 FYSFPEDEASHKKRLIA 198
           FYSFPEDEASHKK+LIA
Sbjct: 181 FYSFPEDEASHKKQLIA 197

[Close]

BLAST of CmoCh04G003910 vs. ExPASy TrEMBL
Match: A0A6J1CIA6 (Cyclin OS=Momordica charantia OX=3673 GN=LOC111011438 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.7e-74
Identity = 146/193 (75.65%), Postives = 164/193 (84.97%), Query Frame = 0


Query: 5   DHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERI 64
           + H ++A PIP+VITFLSSLLQRVSESND   +   A K+SAFHGLT+P ISI +YL+RI
Sbjct: 3   EDHQEIA-PIPRVITFLSSLLQRVSESNDDGGQ---APKISAFHGLTRPAISIHSYLQRI 62

Query: 65  FKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYY 124
           FKYANCSPSCFVVAYVYLDR  Q+HPSLPIDSFNVHRLLITSVL SAKFLDDL YNNAYY
Sbjct: 63  FKYANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLXSAKFLDDLYYNNAYY 122

Query: 125 AKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIP--IKFY 184
           AKVGGIST+EMNLLE+DFLFGLGFQLNVT NTFHTYCSYL+ E+L TQ NL     +KF 
Sbjct: 123 AKVGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNLQTKTLLKFR 182

Query: 185 SFPEDEASHKKRL 196
            F EDE SH+++L
Sbjct: 183 PFVEDETSHQRQL 191

[Close]

BLAST of CmoCh04G003910 vs. ExPASy TrEMBL
Match: B9RA01 (Cyclin OS=Ricinus communis OX=3988 GN=RCOM_1502450 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.8e-70
Identity = 141/205 (68.78%), Postives = 167/205 (81.46%), Query Frame = 0


Query: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADL+      V +PKV+TFLSSLLQRV+ESND SH+LH   ++S FHGLT+P+IS+Q+Y
Sbjct: 1   MADLE---ATVVVMPKVVTFLSSLLQRVAESNDLSHQLH-PQRISVFHGLTRPSISVQSY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFV+AYVYLDR AQR PS PI+SFNVHRLLITSVLVSAKF+DD+ YN
Sbjct: 61  LERIFKYANCSPSCFVIAYVYLDRFAQRQPSFPINSFNVHRLLITSVLVSAKFMDDIYYN 120

Query: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQS------- 180
           NAYYAKVGGIST EMN+LE+DFLFGLGFQLNVT NTFHTYCSYL+ E+L   S       
Sbjct: 121 NAYYAKVGGISTSEMNILEVDFLFGLGFQLNVTPNTFHTYCSYLQREMLVQSSQHQLVEP 180

Query: 181 --NLPIPIKFY-SFPEDEASHKKRL 196
             N+   +K +  F EDE++H+K+L
Sbjct: 181 PLNMARALKIHCCFSEDESTHQKQL 201

[Close]

BLAST of CmoCh04G003910 vs. ExPASy TrEMBL
Match: A0A2C9VSH5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G130300 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.6e-69
Identity = 140/202 (69.31%), Postives = 164/202 (81.19%), Query Frame = 0


Query: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADL    +  V +PK+ITFLSSLLQRV+ESND +H+LH   ++S FHGLT+P ISIQ+Y
Sbjct: 1   MADL----EATVVMPKIITFLSSLLQRVAESNDHTHQLH-PQRISVFHGLTRPNISIQSY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDR A + PS PI+SFNVHRLLITSVLVSAKFLDD+ YN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRFAHKQPSFPINSFNVHRLLITSVLVSAKFLDDIYYN 120

Query: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEV------LSTQSN 180
           NAYYAKVGGIST EMNLLE+DFLFGLGFQLNVT  TF+TYCSYL+ E+      L    N
Sbjct: 121 NAYYAKVGGISTAEMNLLEVDFLFGLGFQLNVTPTTFNTYCSYLQREMMQSSVELDNPLN 180

Query: 181 LPIPIKFY-SFPEDEASHKKRL 196
           +  P+K +  F EDE++H+K+L
Sbjct: 181 ISRPLKLHCCFSEDESTHQKQL 197

[Close]

BLAST of CmoCh04G003910 vs. NCBI nr
Match: XP_022941693.1 (cyclin-U4-1-like [Cucurbita moschata])

HSP 1 Score: 397.1 bits (1019), Expect = 8.7e-107
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY
Sbjct: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120

Query: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIPIK 180
           NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIPIK
Sbjct: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIPIK 180

Query: 181 FYSFPEDEASHKKRLIA 198
           FYSFPEDEASHKKRLIA
Sbjct: 181 FYSFPEDEASHKKRLIA 197

[Close]

BLAST of CmoCh04G003910 vs. NCBI nr
Match: KAG6600208.1 (Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030869.1 Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 392.5 bits (1007), Expect = 2.1e-105
Identity = 194/197 (98.48%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSH+LHSAAK SAFHGLTKPTISIQTY
Sbjct: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHQLHSAAKASAFHGLTKPTISIQTY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPID FNVHRLLITSVLVSAKFLDDLCYN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDPFNVHRLLITSVLVSAKFLDDLCYN 120

Query: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIPIK 180
           NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIPIK
Sbjct: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIPIK 180

Query: 181 FYSFPEDEASHKKRLIA 198
           FYSFPEDEASHKKRLIA
Sbjct: 181 FYSFPEDEASHKKRLIA 197

[Close]

BLAST of CmoCh04G003910 vs. NCBI nr
Match: XP_022992955.1 (cyclin-U4-1-like [Cucurbita maxima])

HSP 1 Score: 387.1 bits (993), Expect = 9.0e-104
Identity = 192/197 (97.46%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADLDH NQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY
Sbjct: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDRL QRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120

Query: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIPIK 180
           NAYYAKVGGIST+EMNLLEIDFLFGLGFQLNVT NTFHTYCSYLRAEVLSTQSNLPIPIK
Sbjct: 121 NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEVLSTQSNLPIPIK 180

Query: 181 FYSFPEDEASHKKRLIA 198
           FYSFPEDEASHKK+LIA
Sbjct: 181 FYSFPEDEASHKKQLIA 197

[Close]

BLAST of CmoCh04G003910 vs. NCBI nr
Match: XP_023526236.1 (cyclin-U4-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385.2 bits (988), Expect = 3.4e-103
Identity = 191/197 (96.95%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSH+LHSAAKVSAFHGLTKPTISIQTY
Sbjct: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHQLHSAAKVSAFHGLTKPTISIQTY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120

Query: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIPIK 180
           NAYYAKVGGIS VEMNLLEIDFLFGLGFQLNVT NTFHTYCSYLR EVLSTQSNLPIPIK
Sbjct: 121 NAYYAKVGGISRVEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRPEVLSTQSNLPIPIK 180

Query: 181 FYSFPEDEASHKKRLIA 198
           FYSFPEDEASH K+LIA
Sbjct: 181 FYSFPEDEASHHKQLIA 197

[Close]

BLAST of CmoCh04G003910 vs. NCBI nr
Match: XP_022140882.1 (cyclin-U4-1-like [Momordica charantia])

HSP 1 Score: 287.3 bits (734), Expect = 9.7e-74
Identity = 146/193 (75.65%), Postives = 164/193 (84.97%), Query Frame = 0


Query: 5   DHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERI 64
           + H ++A PIP+VITFLSSLLQRVSESND   +   A K+SAFHGLT+P ISI +YL+RI
Sbjct: 3   EDHQEIA-PIPRVITFLSSLLQRVSESNDDGGQ---APKISAFHGLTRPAISIHSYLQRI 62

Query: 65  FKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYY 124
           FKYANCSPSCFVVAYVYLDR  Q+HPSLPIDSFNVHRLLITSVL SAKFLDDL YNNAYY
Sbjct: 63  FKYANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLXSAKFLDDLYYNNAYY 122

Query: 125 AKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPIP--IKFY 184
           AKVGGIST+EMNLLE+DFLFGLGFQLNVT NTFHTYCSYL+ E+L TQ NL     +KF 
Sbjct: 123 AKVGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNLQTKTLLKFR 182

Query: 185 SFPEDEASHKKRL 196
            F EDE SH+++L
Sbjct: 183 PFVEDETSHQRQL 191

[Close]

BLAST of CmoCh04G003910 vs. TAIR 10
Match: AT2G44740.1 (cyclin p4;1 )

HSP 1 Score: 245.0 bits (624), Expect = 5.1e-65
Identity = 128/199 (64.32%), Postives = 158/199 (79.40%), Query Frame = 0


Query: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHS-AAKVSAFHGLTKPTISIQT 60
           MA+L++ + M+    K+I FLSSLL+RV+ESND +  + + + +VS FHGL++PTI+IQ+
Sbjct: 1   MAELENPSVMS----KLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQS 60

Query: 61  YLERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCY 120
           YLERIFKYANCSPSCFVVAYVYLDR   R PSLPI+SFNVHRLLITSV+V+AKFLDDL Y
Sbjct: 61  YLERIFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYY 120

Query: 121 NNAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQS----NL 180
           NNAYYAKVGGIST EMN LE+DFLFGLGF+LNVT NTF+ Y SYL+ E+   Q      +
Sbjct: 121 NNAYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQPLSLVVV 180

Query: 181 PIPIKFYSFPEDEASHKKR 195
           P      +F +DEASH+K+
Sbjct: 181 PSSRSLITFNDDEASHQKQ 195

[Close]

BLAST of CmoCh04G003910 vs. TAIR 10
Match: AT5G07450.1 (cyclin p4;3 )

HSP 1 Score: 225.7 bits (574), Expect = 3.2e-59
Identity = 111/174 (63.79%), Postives = 142/174 (81.61%), Query Frame = 0


Query: 7   HNQ--MAVPIPKVITFLSSLLQRVSESNDQ-SHELHSAAKVSAFHGLTKPTISIQTYLER 66
           H+Q  MA  +P VIT +SSLLQRVSE+ND  S       ++SAF+ +TKP+ISI++Y+ER
Sbjct: 11  HDQEPMAEIMPNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMER 70

Query: 67  IFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAY 126
           IFKYA+CS SC++VAY+YLDR  Q+ P LPIDS NVHRL+ITSVLVSAKF+DDLCYNNA+
Sbjct: 71  IFKYADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAF 130

Query: 127 YAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNLPI 178
           YAKVGGI+T EMNLLE+DFLFG+GFQLNVT++T++ YCS L+ E++      P+
Sbjct: 131 YAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVMRTMYSPL 184

[Close]

BLAST of CmoCh04G003910 vs. TAIR 10
Match: AT5G61650.1 (CYCLIN P4;2 )

HSP 1 Score: 214.5 bits (545), Expect = 7.4e-56
Identity = 104/164 (63.41%), Postives = 133/164 (81.10%), Query Frame = 0


Query: 5   DHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERI 64
           D    +A  +P V+T +S LLQRVSE+ND    L    K S+F G+TKP+ISI++YLERI
Sbjct: 13  DLQEPLAEIMPSVLTAMSYLLQRVSETND---NLSQKQKPSSFTGVTKPSISIRSYLERI 72

Query: 65  FKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYY 124
           F+YANCS SC++VAY+YLDR  ++ P LPI+SFNVHRL+ITSVLVSAKF+DDL YNN YY
Sbjct: 73  FEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYY 132

Query: 125 AKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEV 169
           AKVGGIS  EMN+LE+DFLFG+GF+LNVT++TF+ YC +L+ E+
Sbjct: 133 AKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREM 173

[Close]

BLAST of CmoCh04G003910 vs. TAIR 10
Match: AT3G21870.1 (cyclin p2;1 )

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-38
Identity = 71/156 (45.51%), Postives = 107/156 (68.59%), Query Frame = 0


Query: 15  PKVITFLSSLLQRVSESND--QSHELHSAAKVSAFHGLTKPTISIQTYLERIFKYANCSP 74
           P+V+T +S +++++   N+            + AFHG+  P+ISI  YLERI+KY  CSP
Sbjct: 25  PRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEAFHGVRAPSISIAKYLERIYKYTKCSP 84

Query: 75  SCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKVGGIST 134
           +CFVV YVY+DRLA +HP   + S NVHRLL+T V+++AK LDD+ YNN +YA+VGG+S 
Sbjct: 85  ACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEFYARVGGVSN 144

Query: 135 VEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEV 169
            ++N +E++ LF L F++ V+   F +YC +L  E+
Sbjct: 145 ADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEM 180

[Close]

BLAST of CmoCh04G003910 vs. TAIR 10
Match: AT3G05327.1 (Cyclin family protein )

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-36
Identity = 79/165 (47.88%), Postives = 108/165 (65.45%), Query Frame = 0


Query: 15  PKVITFLSSLLQRVSESNDQS-HELHSAA-KVSAFHGLTKPTISIQTYLERIFKYANCSP 74
           P+VIT L+S L+++ + N +  H  H+ A +++ FHG   P++SI  Y ERI +YA CSP
Sbjct: 31  PRVITLLASTLEKMIQKNKKKFHTRHNKADEITMFHGSKAPSLSIYRYTERIHRYAQCSP 90

Query: 75  SCFVVAYVYLDRLAQRHPSLP----IDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKVG 134
            CFV A+ Y+ R  QR  +      + S NVHRLLITS+LV+AKFL+  CYNNAYYAK+G
Sbjct: 91  VCFVAAFAYILRYLQRPEATSTARRLTSLNVHRLLITSLLVAAKFLERQCYNNAYYAKIG 150

Query: 135 GISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQS 174
           G+ST EMN LE  FL  + F+L +T  TF  +C  L+ E +   S
Sbjct: 151 GVSTEEMNRLERTFLVDVDFRLYITTETFEKHCLMLQKETVPCDS 195

The following BLAST results are available for this feature:

BLAST of CmoCh04G003910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80513	7.2e-64	64.32	Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1	[more]
Q9LY16	4.5e-58	63.79	Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1	[more]
Q9FKF6	1.0e-54	63.41	Cyclin-U4-3 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-3 PE=1 SV=1	[more]
Q7XC35	8.9e-54	62.20	Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1	[more]
Q9LJ45	1.5e-37	45.51	Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1	[more]

BLAST of CmoCh04G003910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FSU2	4.2e-107	100.00	Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111446976 PE=3 SV=1	[more]
A0A6J1JX61	4.4e-104	97.46	Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111489131 PE=3 SV=1	[more]
A0A6J1CIA6	4.7e-74	75.65	Cyclin OS=Momordica charantia OX=3673 GN=LOC111011438 PE=3 SV=1	[more]
B9RA01	1.8e-70	68.78	Cyclin OS=Ricinus communis OX=3988 GN=RCOM_1502450 PE=3 SV=1	[more]
A0A2C9VSH5	1.6e-69	69.31	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G130300 PE=3 SV=...	[more]

BLAST of CmoCh04G003910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941693.1	8.7e-107	100.00	cyclin-U4-1-like [Cucurbita moschata]	[more]
KAG6600208.1	2.1e-105	98.48	Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030869.1 Cycli...	[more]
XP_022992955.1	9.0e-104	97.46	cyclin-U4-1-like [Cucurbita maxima]	[more]
XP_023526236.1	3.4e-103	96.95	cyclin-U4-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022140882.1	9.7e-74	75.65	cyclin-U4-1-like [Momordica charantia]	[more]

BLAST of CmoCh04G003910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44740.1	5.1e-65	64.32	cyclin p4;1	[more]
AT5G07450.1	3.2e-59	63.79	cyclin p4;3	[more]
AT5G61650.1	7.4e-56	63.41	CYCLIN P4;2	[more]
AT3G21870.1	1.1e-38	45.51	cyclin p2;1	[more]
AT3G05327.1	1.7e-36	47.88	Cyclin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012389	Cyclin P/U	PIRSF	PIRSF027110	PREG	coord: 1..194 e-value: 1.3E-76 score: 255.1
None	No IPR available	GENE3D	1.10.472.10		coord: 5..187 e-value: 1.7E-59 score: 203.0
None	No IPR available	PANTHER	PTHR15615:SF101	CYCLIN	coord: 1..194
None	No IPR available	PANTHER	PTHR15615	UNCHARACTERIZED	coord: 1..194
IPR013922	Cyclin PHO80-like	PFAM	PF08613	Cyclin	coord: 26..150 e-value: 6.9E-41 score: 140.3
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 59..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G003910.1	CmoCh04G003910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0019901	protein kinase binding