CmoCh04G003830 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTTACCTTGCTGGTGCTGCGACTGTGAGTGTCAGTTCGATCCATTTTTCGTTGTAATCACCGTTCTATATCTTATCGATCTCTCTCTCTCTCTGCTTGAACCGACATAGGAGCAACATCGAGAACTCTGAGCTACTGTAGGTATGCTTTTACTATTAATGGAACCAGGTTCGATGTTAATTTCGCTAAATTTCACTTGTTCTACTTGTTTCTGCATTTCCATTTCTATCTTCAGCTTAATTTTCTGTCTGTAGTTTCATTTTGTTGCTAAAGCGCCTTTGGCCTCAGAGTTCGAGTTTGTTAAAGTGTGGAGAACTTGGTTTTGCTCGTTTTGTAAAATTGGAGCTCCTACACTCTAATTGTTTAAGCTTCTCCTATTTTCATATTGAATGATTTTTTTTTTTTTTTTTGGGTGGAACTCGACCGCTTGAAGTTGAGAAAACTTCGATTCGTCTCCTGCATAGCCTTAGGAAGTTCGTATCTCTTTATCTGAGCTCAAATTTATGGAAATGAGTTGCGAAACAGCTATGGGGGTTCTTGTGTTGTTAATGTGTAGTGGTATTTTGAATTAGTGTTGAGGCTCTATCTTTCTTCGTTTCAAATGTTGCAGTGTTCTGTAGCGGATGCGTAAAGGGGATGTGTTGGGGGCGTCAAGCCTTGTAAGTCTAGAGTTGCCATGAGATTGTAATTGAAATTGCTGGAGAAGAATGCCTGGCATACCTCTCGTGACTCGTGAAACTTCGTACGTGCTATTTATTTCCATCAGTCTTTCTAACCCCGAGCTCTCTAATGAAACGTAATAGAAGTAAGATTTGTTTGTAGCTTTGATTTTTCTGGAAGGATCATATCATCTGAGAAATATTTTGACTTTCGAGATTTAAATGAGCTGTAAGAGTTGATAACTTCTTATGGCCGGATGTAGCATGTAACTTCATAGTTTGTTGCTGGTACAATCACCAACACATATGGAAAAACTATTGTGAGAAGTTCTTGTGTCTGGGAGGGTCGTGATTGTGGTAGAAGAACTTCAGTGCTTAAGTTCATATGCCTCAAGAGAGAATTTTAAATTTTCCTCCATGATTTCTGACTGTCTACCTTTTTATGTGGTTGTTCTTATTCTTGTTCTTTCTTCTTTTAACTTTGCTGTTGTTGCATATTAGTAATCTTTAGTTGCTCTCCCAGCTGTTCCAGAAACGCAGATCAGATGTGCCGTGTAGAATCTCGTGTTCATCTATCTGAAGAAGAGGAAATTGCTGCAGAAGAGAGCCTCTCACTTTACTGCAAGCCAGTTGAACTCTATAACATTCTTCAACGGCGTGCTATTAGAAATGTAATACATTTTAGCTTGTTTTTCTCTCTCTCCAAATTGGAGATAATACATGATATATAATGAGGCAAGACTCGTAAGAACAACTTGAGATTGATCTGGAAAGTTTGGATAGTTTTGAAAGGTCGTTGATCGAAAATAAAATGCAATTGTCATATTTGTGTTGTTTGGCCCATATTATACTAATCTTTCTTTTTTGTTCATTGTAGCCATTGTTTCTTCAAAGATGTTTAAGTTACAAAATAGAGACAGAACACAGGAGAAGGTAATTGGTTTTGTTTTGGATTCTCTTCAAAATTTCTCTATATCAACTATCAGAAGAATTTGGTTTCATATCAGAATGGTTAAGCTAGTATCATTTGGTTCCTCTGGACATCATTTTCACCATTTTCACGTTCAGTGATCTTTTTTTGGTTAAGAAAATAGACATTTCATTAATATGTGAAAATTATAATATAGAGTTCAAAAAAGGTGTTGAACCGTCAATCAATGCTTGTTCAAGTGCACATGCACATTGAGGCATAATTGCCTTTGAAGTGCAGGCAGGTGATGCCACACCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAAAAAAAAAAAAAAGATACGTGCCATAATTAGGCAAGTACACTGCATGTCAAAAGAATTGGTGTACCAAAGATAAATTTTAGATTCAGATAAATTAAAGAAACAAGGAGTTTTAAGGATTTGCTCAAGTTTGAGCCTTAGTGAGGGGAGACGATCTTCGAAGTGAGGTGAGAGAAAACTTCAAAAAAAGAAGTCCAAGTGTTTTCGACCTTTTTATATGATTAGTTAAATTTGTGTAGTTAATGGTAGCAGTTTATTTTTGAGAAGAAAACTTCATTGTGGAACCTTGTTTAAATTCCTTTTGGTATGAATTCATTCTTGCTTCTCTCGTTAGATAGTTGTGCTTGCTTTCTCTTTGAACCTCTATGCCTCCATTCTTGGTAGTTATCTTCTGTCAATTACGTTCTTTCTCTTTCTTCAATGGCGGTGGTTTCCATTGTTGGATTTTGAATCTTGATTTTAATATCTACTATTTATTAGTTTTGGTCTTGAATCTGTAGGATCCAGATGACAATTTCAATTTCTAGGACTTCGGGTGGGGGTGGGCAGGCACATAATCTGTTTCCTGTGTATGTCATCTTGGGAAGATTAGTCTCGGACATTGCAGTTGCTGAGGTAAGAAGGCCTGTTGTAGTTTTCAGCTCTGTTCGTTCATTGAATGAATATTAATTATTAGGTGGTTTTCTGCATTTTAAACACTCTTTTAAGCCCTTATTGTTCATCCTACTGCTTGTTACATTTTATTATATCTAATTATAAGTTTTCTTCATTCCTTTTTTAAACCATTAGTTCTCTGGTGTATATCGCTTCAATCGAGCTTGCCTCTTAACTGGCATCAACAGAGGGGAATGCAGTTCTCAAGTTGTAGCTAATTTCATCCTCCCTGAAATTAACAAGCTAGCTGTGGAGGCAAAATCTGGGTCACTTGCTATATTATTTGTTAGCCACAGTAGGTGTTCATGTTTAACTTTTACTGATGGCCAGATTTATTCAAGGAACTACGTTATATTTGGTCTATATGCGTGTCTCAGTTGGATCCACAAATACTTTGTCCGGAGTAGATTCAGTTGATGGGTCTCTATACATGGCATCTGTTCCTGGTATGCCTTTTCCTCCATTGAGTTGCTTCTATTATGGATTCTTCTGTCTAATATGATTCCACATCCTTATTTGATTTAGTGTGTCAAATTATAACCAATTGTTTGCTGGTAGAGCTAATTTTTTACTTCTTATTGGGCTCAAACTTTGAATTAATTTGGCATTGAGTTATATCAAGAAGAGGTCAAAAAAAAAAAAAAAAAAACGGTATGCTTCCCTTGCCCTGAGGGATACTTGAGAACCTTGTTGATTTTGCATTTTTTTGAGGGCTATTATTTTTTTGATAAGAACCTTTTGAACCCATAAAATATAGGGAGTAAAATCTTAGCCCTGGTTTAAGGAAGTAGCATGCAGGGAAGCTAACCCTTGGTTGTAAGATTATTTGGATAACCTACCCTAATATGGGAACATAAAAGCAATATATTCCTATTTCCCAGAAAACAAGGAACTATCTCTCTGCTTCCTGGAAAGTTCTGTTGTTTCTTTCCAATTTAAAAGTCCAATGAAAATCTCTAATAAAATTGCGTTTCTTTGGATGTAGCAGTTGCAGGTTATTGCTTGTGGGGCAAGATACCTTTGGAATCACTTTACATTTCGTGGCAGAATTCTTCAAATTTTGGTCTTGGACAGAGGGCAGAGATAATGTCAACTGTTGATATGCGCTCTTGTGTCCTTAAGGTTTGATCAAATGCTTCTGTTTTCCTCTAGAAACTATACTGATGTCATTTCACTAGTAGCTGCTTATTTATGTTCACCTGGTGATAACTCTCAATCTCTTATCACCATCTCGCCAGGTTATTAGTTTATATTTTATTTCTTGCAGACAAGTTGCTTGGATGGAGAGAAGTGTCTGGGATTTCAAATTCCATATAATTCCGATTCTATGGTCTGTTTTGACAATCAGTTTTAGTTTATTCTACTTATGTATTGAGTAACATTTTGTCCTCTGTCAGTGCTTCACTTATCTTTGTCTTTCTTTTTCTCCATATCTTTCTTAATTTTTGGGTCTCAAAAGCATACAGCACAGCAAGTACAAGTCACAATTTCTGCAGAGGAGTTTGGCGCTAGGGATAAATCTCCATACGATTCATACACGTACAGTGTAATACCTTCCTCATCACTATCTCATATGATTCGGTAG GTTACCTTGCTGGTGCTGCGACTGTGAGTGTCAGTTCGATCCATTTTTCGTTGTAATCACCGTTCTATATCTTATCGATCTCTCTCTCTCTCTGCTTGAACCGACATAGGAGCAACATCGAGAACTCTGAGCTACTGTAGTGTTCTGTAGCGGATGCGTAAAGGGGATGTGTTGGGGGCGTCAAGCCTTGTAAGTCTAGAGTTGCCATGAGATTGTAATTGAAATTGCTGGAGAAGAATGCCTGGCATACCTCTCGTGACTCGTGAAACTTCCTGTTCCAGAAACGCAGATCAGATGTGCCGTGTAGAATCTCGTGTTCATCTATCTGAAGAAGAGGAAATTGCTGCAGAAGAGAGCCTCTCACTTTACTGCAAGCCAGTTGAACTCTATAACATTCTTCAACGGCGTGCTATTAGAAATCCATTGTTTCTTCAAAGATGTTTAAGTTACAAAATAGAGACAGAACACAGGAGAAGGATCCAGATGACAATTTCAATTTCTAGGACTTCGGGTGGGGGTGGGCAGGCACATAATCTGTTTCCTGTGTATGTCATCTTGGGAAGATTAGTCTCGGACATTGCAGTTGCTGAGTTCTCTGGTGTATATCGCTTCAATCGAGCTTGCCTCTTAACTGGCATCAACAGAGGGGAATGCAGTTCTCAAGTTGTAGCTAATTTCATCCTCCCTGAAATTAACAAGCTAGCTGTGGAGGCAAAATCTGGGTCACTTGCTATATTATTTGTTAGCCACATTGGATCCACAAATACTTTGTCCGGAGTAGATTCAGTTGATGGGTCTCTATACATGGCATCTGTTCCTGTTGCAGGTTATTGCTTGTGGGGCAAGATACCTTTGGAATCACTTTACATTTCGTGGCAGAATTCTTCAAATTTTGGTCTTGGACAGAGGGCAGAGATAATGTCAACTGTTGATATGCGCTCTTGTGTCCTTAAGACAAGTTGCTTGGATGGAGAGAAGTGTCTGGGATTTCAAATTCCATATAATTCCGATTCTATGCATACAGCACAGCAAGTACAAGTCACAATTTCTGCAGAGGAGTTTGGCGCTAGGGATAAATCTCCATACGATTCATACACGTACAGTGTAATACCTTCCTCATCACTATCTCATATGATTCGGTAG ATGCCTGGCATACCTCTCGTGACTCGTGAAACTTCCTGTTCCAGAAACGCAGATCAGATGTGCCGTGTAGAATCTCGTGTTCATCTATCTGAAGAAGAGGAAATTGCTGCAGAAGAGAGCCTCTCACTTTACTGCAAGCCAGTTGAACTCTATAACATTCTTCAACGGCGTGCTATTAGAAATCCATTGTTTCTTCAAAGATGTTTAAGTTACAAAATAGAGACAGAACACAGGAGAAGGATCCAGATGACAATTTCAATTTCTAGGACTTCGGGTGGGGGTGGGCAGGCACATAATCTGTTTCCTGTGTATGTCATCTTGGGAAGATTAGTCTCGGACATTGCAGTTGCTGAGTTCTCTGGTGTATATCGCTTCAATCGAGCTTGCCTCTTAACTGGCATCAACAGAGGGGAATGCAGTTCTCAAGTTGTAGCTAATTTCATCCTCCCTGAAATTAACAAGCTAGCTGTGGAGGCAAAATCTGGGTCACTTGCTATATTATTTGTTAGCCACATTGGATCCACAAATACTTTGTCCGGAGTAGATTCAGTTGATGGGTCTCTATACATGGCATCTGTTCCTGTTGCAGGTTATTGCTTGTGGGGCAAGATACCTTTGGAATCACTTTACATTTCGTGGCAGAATTCTTCAAATTTTGGTCTTGGACAGAGGGCAGAGATAATGTCAACTGTTGATATGCGCTCTTGTGTCCTTAAGACAAGTTGCTTGGATGGAGAGAAGTGTCTGGGATTTCAAATTCCATATAATTCCGATTCTATGCATACAGCACAGCAAGTACAAGTCACAATTTCTGCAGAGGAGTTTGGCGCTAGGGATAAATCTCCATACGATTCATACACGTACAGTGTAATACCTTCCTCATCACTATCTCATATGATTCGGTAG MPGIPLVTRETSCSRNADQMCRVESRVHLSEEEEIAAEESLSLYCKPVELYNILQRRAIRNPLFLQRCLSYKIETEHRRRIQMTISISRTSGGGGQAHNLFPVYVILGRLVSDIAVAEFSGVYRFNRACLLTGINRGECSSQVVANFILPEINKLAVEAKSGSLAILFVSHIGSTNTLSGVDSVDGSLYMASVPVAGYCLWGKIPLESLYISWQNSSNFGLGQRAEIMSTVDMRSCVLKTSCLDGEKCLGFQIPYNSDSMHTAQQVQVTISAEEFGARDKSPYDSYTYSVIPSSSLSHMIR Homology
BLAST of CmoCh04G003830 vs. ExPASy Swiss-Prot
Match: Q8L6Y4 (Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana OX=3702 GN=EMF2 PE=1 SV=2) HSP 1 Score: 348.6 bits (893), Expect = 7.1e-95 Identity = 177/302 (58.61%), Postives = 227/302 (75.17%), Query Frame = 0
BLAST of CmoCh04G003830 vs. ExPASy Swiss-Prot
Match: Q69KN0 (Polycomb group protein EMF2B OS=Oryza sativa subsp. japonica OX=39947 GN=EMF2B PE=1 SV=1) HSP 1 Score: 209.1 bits (531), Expect = 6.7e-53 Identity = 121/289 (41.87%), Postives = 178/289 (61.59%), Query Frame = 0
BLAST of CmoCh04G003830 vs. ExPASy Swiss-Prot
Match: Q0JF48 (Polycomb group protein EMF2A OS=Oryza sativa subsp. japonica OX=39947 GN=EMF2A PE=2 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 6.5e-48 Identity = 113/316 (35.76%), Postives = 174/316 (55.06%), Query Frame = 0
BLAST of CmoCh04G003830 vs. ExPASy Swiss-Prot
Match: Q8W5B1 (Polycomb group protein VERNALIZATION 2 OS=Arabidopsis thaliana OX=3702 GN=VRN2 PE=1 SV=2) HSP 1 Score: 67.8 bits (164), Expect = 2.4e-10 Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 0
BLAST of CmoCh04G003830 vs. ExPASy TrEMBL
Match: A0A6J1FR81 (polycomb group protein EMBRYONIC FLOWER 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447466 PE=3 SV=1) HSP 1 Score: 599.0 bits (1543), Expect = 1.1e-167 Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0
BLAST of CmoCh04G003830 vs. ExPASy TrEMBL
Match: A0A6J1FNT0 (polycomb group protein EMBRYONIC FLOWER 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447466 PE=3 SV=1) HSP 1 Score: 594.3 bits (1531), Expect = 2.7e-166 Identity = 301/302 (99.67%), Postives = 301/302 (99.67%), Query Frame = 0
BLAST of CmoCh04G003830 vs. ExPASy TrEMBL
Match: A0A6J1FNT5 (polycomb group protein EMBRYONIC FLOWER 2-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111447466 PE=3 SV=1) HSP 1 Score: 594.3 bits (1531), Expect = 2.7e-166 Identity = 301/302 (99.67%), Postives = 301/302 (99.67%), Query Frame = 0
BLAST of CmoCh04G003830 vs. ExPASy TrEMBL
Match: A0A6J1JLU1 (polycomb group protein EMBRYONIC FLOWER 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486367 PE=3 SV=1) HSP 1 Score: 593.2 bits (1528), Expect = 6.1e-166 Identity = 297/301 (98.67%), Postives = 300/301 (99.67%), Query Frame = 0
BLAST of CmoCh04G003830 vs. ExPASy TrEMBL
Match: A0A6J1JNS7 (polycomb group protein EMBRYONIC FLOWER 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486367 PE=3 SV=1) HSP 1 Score: 588.6 bits (1516), Expect = 1.5e-164 Identity = 297/302 (98.34%), Postives = 300/302 (99.34%), Query Frame = 0
BLAST of CmoCh04G003830 vs. NCBI nr
Match: XP_022942414.1 (polycomb group protein EMBRYONIC FLOWER 2-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 599.0 bits (1543), Expect = 2.3e-167 Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0
BLAST of CmoCh04G003830 vs. NCBI nr
Match: XP_023532633.1 (polycomb group protein EMBRYONIC FLOWER 2-like isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 599.0 bits (1543), Expect = 2.3e-167 Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0
BLAST of CmoCh04G003830 vs. NCBI nr
Match: KAG6600201.1 (Polycomb group protein EMBRYONIC FLOWER 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 596.7 bits (1537), Expect = 1.1e-166 Identity = 300/301 (99.67%), Postives = 300/301 (99.67%), Query Frame = 0
BLAST of CmoCh04G003830 vs. NCBI nr
Match: KAG7030863.1 (Polycomb group protein EMBRYONIC FLOWER 2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 596.7 bits (1537), Expect = 1.1e-166 Identity = 300/301 (99.67%), Postives = 300/301 (99.67%), Query Frame = 0
BLAST of CmoCh04G003830 vs. NCBI nr
Match: XP_022942411.1 (polycomb group protein EMBRYONIC FLOWER 2-like isoform X1 [Cucurbita moschata] >XP_022942413.1 polycomb group protein EMBRYONIC FLOWER 2-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 594.3 bits (1531), Expect = 5.7e-166 Identity = 301/302 (99.67%), Postives = 301/302 (99.67%), Query Frame = 0
BLAST of CmoCh04G003830 vs. TAIR 10
Match: AT5G51230.1 (VEFS-Box of polycomb protein ) HSP 1 Score: 348.6 bits (893), Expect = 5.0e-96 Identity = 177/302 (58.61%), Postives = 227/302 (75.17%), Query Frame = 0
BLAST of CmoCh04G003830 vs. TAIR 10
Match: AT5G51230.2 (VEFS-Box of polycomb protein ) HSP 1 Score: 348.6 bits (893), Expect = 5.0e-96 Identity = 177/302 (58.61%), Postives = 227/302 (75.17%), Query Frame = 0
BLAST of CmoCh04G003830 vs. TAIR 10
Match: AT5G51230.3 (VEFS-Box of polycomb protein ) HSP 1 Score: 348.6 bits (893), Expect = 5.0e-96 Identity = 177/302 (58.61%), Postives = 227/302 (75.17%), Query Frame = 0
BLAST of CmoCh04G003830 vs. TAIR 10
Match: AT4G16845.1 (VEFS-Box of polycomb protein ) HSP 1 Score: 67.8 bits (164), Expect = 1.7e-11 Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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