CmoCh04G002670 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G002670
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L10
Location	Cmo_Chr04: 1342812 .. 1343516 (-)
RNA-Seq Expression	CmoCh04G002670
Synteny	CmoCh04G002670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGACCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCGCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACTGTCGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTACTTGGGAAGCCCTAAAGCCCTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGTGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCATCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGCGGGGGGCAGTAA

mRNA sequence

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGACCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCGCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACTGTCGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTACTTGGGAAGCCCTAAAGCCCTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGTGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCATCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGCGGGGGGCAGTAA

Coding sequence (CDS)

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGACCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCGCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACTGTCGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTACTTGGGAAGCCCTAAAGCCCTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGTGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCATCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGCGGGGGGCAGTAA

Protein sequence

MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGGQ

Homology

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BLAST of CmoCh04G002670 vs. ExPASy Swiss-Prot
Match: O80362 (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.8e-83
Identity = 156/229 (68.12%), Postives = 187/229 (81.66%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEA+  + PS  T  S      +   N L+     H   + ++   L +  AISRTKKEE
Sbjct: 1   MEATFFTLPS-STSHSYPFSLKSHFNNSLTLPTHPHFKPKSKN---LTIRSAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVK+QL+ CYLLAGI YKG TVKQFQELR  LP+T+KL+VAKNTLVLKAIEGT WEA
Sbjct: 61  TVETVKQQLEDCYLLAGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFVHSEEIPAA+KPYR FQKEKKLE+NDFTGAVFEGK+YGP++FK LET
Sbjct: 121 LKPCMKGMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGG 230
           +P+RAE+YA++LG LKGPAS++VGT+QAPAR+++MVLKAYV+KLEE+GG
Sbjct: 181 LPTRAEIYAQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEGG 225

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BLAST of CmoCh04G002670 vs. ExPASy Swiss-Prot
Match: Q9FY50 (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.4e-76
Identity = 144/227 (63.44%), Postives = 175/227 (77.09%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           ME +LLSF S  +P   Q ++   P           ++N   + R   +  A+SR KKEE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTP----------KTSNSPNYPRLPVIRSAVSRNKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVE VK  L+ C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WEA
Sbjct: 61  TVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LET
Sbjct: 121 LKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQ 228
           MP+RAEVYAKMLG L+ PA +LV TLQAPAR+V+MVL AY++KLE++
Sbjct: 181 MPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

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BLAST of CmoCh04G002670 vs. ExPASy Swiss-Prot
Match: P82139 (50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 PE=1 SV=2)

HSP 1 Score: 282.0 bits (720), Expect = 6.3e-75
Identity = 134/201 (66.67%), Postives = 162/201 (80.60%), Query Frame = 0


Query: 27  NPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVK 86
           NP   + L       +H     +  AISRTKKEETVETV++ L+ CYLLA I YKGFTVK
Sbjct: 28  NPFKPNNLTFPRTTHKHPTTTTITAAISRTKKEETVETVQKHLENCYLLAAINYKGFTVK 87

Query: 87  QFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPY 146
           QFQ+LR++LPE + LIVAKNTLV KA++ T W A+KPCMKGMN WLFVHSEEIP AIKPY
Sbjct: 88  QFQDLRKALPENTTLIVAKNTLVEKAVQDTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPY 147

Query: 147 RDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTL 206
           R FQKE+KLEDNDFTGA FEGK+YGP + K LETMPS+AE++AK+LG LK P S+LVGTL
Sbjct: 148 RTFQKERKLEDNDFTGACFEGKFYGPGEVKRLETMPSKAEIFAKLLGSLKSPGSALVGTL 207

Query: 207 QAPARDVLMVLKAYVQKLEEQ 228
           QAPARD++ +LKAY++KLE++
Sbjct: 208 QAPARDLVFLLKAYIKKLEDE 228

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BLAST of CmoCh04G002670 vs. ExPASy Swiss-Prot
Match: A5IJW5 (50S ribosomal protein L10 OS=Thermotoga petrophila (strain ATCC BAA-488 / DSM 13995 / JCM 10881 / RKU-1) OX=390874 GN=rplJ PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-17
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 0


Query: 53  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPET----SKLIVAKNTL 112
           ++R +KE  VE + E   K  L+    + GFTV    ELR  L E     ++  V KNTL
Sbjct: 2   LTRQQKELIVEEMSEIFKKTSLILFADFLGFTVADLTELRSKLREKYGDGARFRVVKNTL 61

Query: 113 VLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK 172
           +  A++   +E  +  +KG    L+V   +   A+K   +F K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIVYNFYKDKKADLSRLKGGFLEGK 121

Query: 173 YYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
            +  ++ + +  +PS+ E+YA ++G +K P + LV  L    R+++ VL A  +K  E
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFVLSGILRNLVYVLNAIKEKKSE 179

[Close]

BLAST of CmoCh04G002670 vs. ExPASy Swiss-Prot
Match: B1L937 (50S ribosomal protein L10 OS=Thermotoga sp. (strain RQ2) OX=126740 GN=rplJ PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-17
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 0


Query: 53  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPET----SKLIVAKNTL 112
           ++R +KE  VE + E   K  L+    + GFTV    ELR  L E     ++  V KNTL
Sbjct: 2   LTRQQKELIVEEMSEIFKKTSLILFADFLGFTVADLTELRSKLREKYGDGARFRVVKNTL 61

Query: 113 VLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK 172
           +  A++   +E  +  +KG    L+V   +   A+K   +F K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIVYNFYKDKKADLSRLKGGFLEGK 121

Query: 173 YYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
            +  ++ + +  +PS+ E+YA ++G +K P + LV  L    R+++ VL A  +K  E
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFVLSGILRNLVYVLNAIKEKKSE 179

[Close]

BLAST of CmoCh04G002670 vs. ExPASy TrEMBL
Match: A0A6J1FTN1 (50S ribosomal protein L10, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448014 PE=3 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 5.1e-128
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGGQ 235
           MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGGQ
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGGQ 234

[Close]

BLAST of CmoCh04G002670 vs. ExPASy TrEMBL
Match: A0A6J1JII9 (50S ribosomal protein L10, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487249 PE=3 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 4.1e-125
Identity = 229/232 (98.71%), Postives = 230/232 (99.14%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVA AISRTKKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAAAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 232

[Close]

BLAST of CmoCh04G002670 vs. ExPASy TrEMBL
Match: A0A6J1CCK7 (50S ribosomal protein L10, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009986 PE=3 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 2.1e-113
Identity = 205/232 (88.36%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASLLSFP+ K P SSQ LTLNR TNPLSFSP RHS +QGRH+ CLK++ AISR+KKEE
Sbjct: 1   MEASLLSFPTSKPPPSSQFLTLNRXTNPLSFSPFRHSPHQGRHHHCLKISAAISRSKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           T++TVK+QL+ CYLLAGIKYKGFTV+QFQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TIDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           MPSRAEVYAKMLGLL GPASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 232

[Close]

BLAST of CmoCh04G002670 vs. ExPASy TrEMBL
Match: A0A5A7SUB8 (50S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00270 PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.0e-112
Identity = 209/232 (90.09%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASL+SF SF  P SSQILTLNRPTNPLSFS  RHSTNQ RHYR LKVA AISRTKKEE
Sbjct: 1   MEASLISFTSFTPPPSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVK+QL+ CYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           MPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 MPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 232

[Close]

BLAST of CmoCh04G002670 vs. ExPASy TrEMBL
Match: A0A1S3BDM0 (50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738 PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.0e-112
Identity = 209/232 (90.09%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASL+SF SF  P SSQILTLNRPTNPLSFS  RHSTNQ RHYR LKVA AISRTKKEE
Sbjct: 1   MEASLISFTSFTPPPSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVK+QL+ CYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           MPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 MPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 232

[Close]

BLAST of CmoCh04G002670 vs. NCBI nr
Match: XP_022943219.1 (50S ribosomal protein L10, chloroplastic [Cucurbita moschata] >KAG7030766.1 50S ribosomal protein L10, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 466.8 bits (1200), Expect = 1.1e-127
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGGQ 235
           MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGGQ
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGGQ 234

[Close]

BLAST of CmoCh04G002670 vs. NCBI nr
Match: XP_023523503.1 (50S ribosomal protein L10, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 460.3 bits (1183), Expect = 9.9e-126
Identity = 230/232 (99.14%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKV+GAISRTKKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVSGAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 232

[Close]

BLAST of CmoCh04G002670 vs. NCBI nr
Match: KAG6600094.1 (50S ribosomal protein L10, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 458.8 bits (1179), Expect = 2.9e-125
Identity = 232/234 (99.15%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MEASLLSFPSFKTP-SSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKE 60
           MEASLLSFPSFKTP SSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKE
Sbjct: 1   MEASLLSFPSFKTPSSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKE 60

Query: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWE 120
           ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+WE
Sbjct: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLE 180
           ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLE
Sbjct: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLE 180

Query: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGG 234
           TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGG
Sbjct: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGG 234

[Close]

BLAST of CmoCh04G002670 vs. NCBI nr
Match: XP_022990377.1 (50S ribosomal protein L10, chloroplastic [Cucurbita maxima])

HSP 1 Score: 457.2 bits (1175), Expect = 8.4e-125
Identity = 229/232 (98.71%), Postives = 230/232 (99.14%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVA AISRTKKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAAAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 232

[Close]

BLAST of CmoCh04G002670 vs. NCBI nr
Match: XP_022138927.1 (50S ribosomal protein L10, chloroplastic [Momordica charantia])

HSP 1 Score: 418.3 bits (1074), Expect = 4.3e-113
Identity = 205/232 (88.36%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASLLSFP+ K P SSQ LTLNR TNPLSFSP RHS +QGRH+ CLK++ AISR+KKEE
Sbjct: 1   MEASLLSFPTSKPPPSSQFLTLNRXTNPLSFSPFRHSPHQGRHHHCLKISAAISRSKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           T++TVK+QL+ CYLLAGIKYKGFTV+QFQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TIDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           MPSRAEVYAKMLGLL GPASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 232

[Close]

BLAST of CmoCh04G002670 vs. TAIR 10
Match: AT5G13510.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 286.2 bits (731), Expect = 2.4e-77
Identity = 144/227 (63.44%), Postives = 175/227 (77.09%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           ME +LLSF S  +P   Q ++   P           ++N   + R   +  A+SR KKEE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTP----------KTSNSPNYPRLPVIRSAVSRNKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVE VK  L+ C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WEA
Sbjct: 61  TVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LET
Sbjct: 121 LKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQ 228
           MP+RAEVYAKMLG L+ PA +LV TLQAPAR+V+MVL AY++KLE++
Sbjct: 181 MPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of CmoCh04G002670 vs. TAIR 10
Match: AT3G12370.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 186.0 bits (471), Expect = 3.4e-47
Identity = 92/146 (63.01%), Postives = 108/146 (73.97%), Query Frame = 0


Query: 66  KEQLDKCYLLAGIKYKGFTVKQFQELRRSLPE--TSKLIVAKNTLVLKAIEGTTWEALKP 125
           K  L+ C+ + GI Y G +VKQ QELR  L E   +KL+VAKNTLV KA+EGT WE+LKP
Sbjct: 15  KINLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKP 74

Query: 126 CMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLETMPS 185
           CMKGMN WLFV SE+IPAA+K + +FQKEKKL DN+  GAVFE K Y P D+K +ETMPS
Sbjct: 75  CMKGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVIETMPS 134

Query: 186 RAEVYAKMLGLLKGPASSLVGTLQAP 210
           RA+VY  MLG L  PA  LV  LQAP
Sbjct: 135 RADVYGMMLGSLHWPALDLVNALQAP 160

The following BLAST results are available for this feature:

BLAST of CmoCh04G002670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80362	2.8e-83	68.12	50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 P...	[more]
Q9FY50	3.4e-76	63.44	50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P82139	6.3e-75	66.67	50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 P...	[more]
A5IJW5	1.6e-17	30.90	50S ribosomal protein L10 OS=Thermotoga petrophila (strain ATCC BAA-488 / DSM 13...	[more]
B1L937	1.6e-17	30.90	50S ribosomal protein L10 OS=Thermotoga sp. (strain RQ2) OX=126740 GN=rplJ PE=3 ...	[more]

BLAST of CmoCh04G002670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FTN1	5.1e-128	100.00	50S ribosomal protein L10, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JII9	4.1e-125	98.71	50S ribosomal protein L10, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1CCK7	2.1e-113	88.36	50S ribosomal protein L10, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7SUB8	1.0e-112	90.09	50S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3BDM0	1.0e-112	90.09	50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738...	[more]

BLAST of CmoCh04G002670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943219.1	1.1e-127	100.00	50S ribosomal protein L10, chloroplastic [Cucurbita moschata] >KAG7030766.1 50S ...	[more]
XP_023523503.1	9.9e-126	99.14	50S ribosomal protein L10, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG6600094.1	2.9e-125	99.15	50S ribosomal protein L10, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022990377.1	8.4e-125	98.71	50S ribosomal protein L10, chloroplastic [Cucurbita maxima]	[more]
XP_022138927.1	4.3e-113	88.36	50S ribosomal protein L10, chloroplastic [Momordica charantia]	[more]

BLAST of CmoCh04G002670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13510.1	2.4e-77	63.44	Ribosomal protein L10 family protein	[more]
AT3G12370.1	3.4e-47	63.01	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 52..181 e-value: 4.2E-30 score: 106.6
IPR043141	Ribosomal protein L10-like domain superfamily	SUPERFAMILY	160369	Ribosomal protein L10-like	coord: 55..223
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 55..150 e-value: 3.7E-21 score: 75.1
IPR001790	Ribosomal protein L10P	PANTHER	PTHR11560	39S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL	coord: 33..229
IPR001790	Ribosomal protein L10P	CDD	cd05797	Ribosomal_L10	coord: 54..211 e-value: 1.6087E-48 score: 154.97
None	No IPR available	GENE3D	6.10.250.290		coord: 182..225 e-value: 7.0E-12 score: 46.9
IPR022973	Ribosomal protein L10	HAMAP	MF_00362	Ribosomal_L10	coord: 53..213 score: 18.49255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G002670.1	CmoCh04G002670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome