CmoCh04G002610 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G002610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 1305384 .. 1306456 (+)
RNA-Seq ExpressionCmoCh04G002610
SyntenyCmoCh04G002610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTTCAGAAAATTCGAAACCCAAATGCTGGTGTCGAATCAGGAATCAGTGCGCTTCTGAAAGAATCGAGGGCTCATATTACCAGCGAAGCGAAGGGACGTGATTCAGGTTGGGTTTGGCTTACTTTCGACATCGTAGGGTTTATCATTTCTTAATCCTCGGCTTTTCAACTTATCTCTCCCAATTTTCCCGGAAAATTTACTCAGTTTTCCGAGAAAGTGATATCGTGGAACTTTCTGTCTTTACTTTTTTGTTTGAATGATTACTTGGATTCATATATTTTAGGGTTTTTGCTATTTTTTTTTATGTTCTGCCAATTAGAAAAGAAGGTGAGCAATAGTTGCCTGAAATGGCGGGTTCGTTAAAGGTTAAAATCAAGAATCCAGGCAATAAGTTAGAAAACCAAAACTGAAAAGTGCCAAATTTAATTTAATAAACTGATAAGAACCCTTAGAAAACGAGGGCTTTTTTTATTTTGTTTATTAAATTGTTCCCAAACCAAGGGATTCTGTTGTTGGAGAGTGATCCATCTGTTTCTTTGGCTCAAAGAAACAGAAAAAGGAAAAAAAAATTAATAAAAAAAAAAAAGAAAAAAAATTTAAAAAATTCAAAAAAGAAGGAAAAGAAAAGGAAGAAATCCCGAGGAGGAGGAGGGCCAATTAAACTTCAGGAATTTCCCTCTTTCCAGATCTGCTCGTTTCAACGTTCTGACAGGTTTTTTTCTTCTGTCAGAACACCCCAAATTCTTTTTACTTGATTCCCTTTGTTCATTTTCATCTTATAATGCGTTTCTCAGTCTATAATTTGGACAGTTTTGCAGAAAAGTGTCTGCAAACTCTCTCGGCTATCTCAAGGTTTGTAGTGCAACTTCTTTTACTTGATGTTTGGTTTCTTTGTATTCTTTAGTGTTCCTAGGTTCAATTTTTGTTCTTTTGGTTGATTTATACTTAGAAACTGTTCTATATGTTCATATGTATCAATGTTGAACTTTCATTCAATGTGATTCTTGAATTTGCAGTTTCTACGTATAGACATCAAGAAACTCAATGTTATATTGTTGAAATACTGA

mRNA sequence

ATGGAACTTCAGAAAATTCGAAACCCAAATGCTGGTGTCGAATCAGGAATCAGTGCGCTTCTGAAAGAATCGAGGGCTCATATTACCAGCGAAGCGAAGGGACGTGATTCAGGTTGGGTTTGGCTTACTTTCGACATCGTAGGAAAAGTGTCTGCAAACTCTCTCGGCTATCTCAAGTTTCTACGTATAGACATCAAGAAACTCAATGTTATATTGTTGAAATACTGA

Coding sequence (CDS)

ATGGAACTTCAGAAAATTCGAAACCCAAATGCTGGTGTCGAATCAGGAATCAGTGCGCTTCTGAAAGAATCGAGGGCTCATATTACCAGCGAAGCGAAGGGACGTGATTCAGGTTGGGTTTGGCTTACTTTCGACATCGTAGGAAAAGTGTCTGCAAACTCTCTCGGCTATCTCAAGTTTCTACGTATAGACATCAAGAAACTCAATGTTATATTGTTGAAATACTGA

Protein sequence

MELQKIRNPNAGVESGISALLKESRAHITSEAKGRDSGWVWLTFDIVGKVSANSLGYLKFLRIDIKKLNVILLKY
Homology
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BLAST of CmoCh04G002610 vs. NCBI nr
Match: KAG7030759.1 (hypothetical protein SDJN02_04796, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-16
Identity = 64/108 (59.26%), Postives = 66/108 (61.11%), Query Frame = 0 

Query: 1   MELQKIRNPNAGVESGISALLKESRAHITSEAKGRDS----------------------- 60
           M LQ IRNPNAGVESGISALLKESRAH TSE KGRDS                       
Sbjct: 1   MLLQNIRNPNAGVESGISALLKESRAHFTSEEKGRDSEKKVSNSCLKWREKKRKKSRGGG 60

Query: 61  GWVWL----TFDIVG------KVSANSLGYLKFLRIDIKKLNVILLKY 76
           G + L    +F I        KVSANSLGYLKFLRIDIKKLNVILLKY
Sbjct: 61  GPIKLQQFPSFQICSFQRSDRKVSANSLGYLKFLRIDIKKLNVILLKY 108

The following BLAST results are available for this feature:
BLAST of CmoCh04G002610 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G002610 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G002610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030759.12.7e-1659.26hypothetical protein SDJN02_04796, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh04G002610 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G002610.1CmoCh04G002610.1mRNA