CmoCh04G002410 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G002410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Plant protein 1589 of unknown function
Location	Cmo_Chr04: 1208181 .. 1208878 (+)
RNA-Seq Expression	CmoCh04G002410
Synteny	CmoCh04G002410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATTTATACACAAATTTTCTTAAAACAATTGATCCCATAAGCTCTTCACAACAAATATAATGGCTGATTCTTCTGCTGCTTACATTCATATGGTAAGTTGGTAACCCTTTCCTTTCATATTTTTCTCGTAAAATCTCATCCGTTCGTTCCGATCGATCGATAATGTGTAAAAACGTTCCTCTCGCTGATAATAGGTGCAACGCTTGATTGAAATGTGTTTGATCTTCCGTATGAATAAAGAAGAGTGCATGGAAGCTGTTTCTAAACACGCCAATATCAACCCTGTAATCACCTCTACTGGTACTGGTTCGTTGACGTTTTTAATTAATCCGCTCTTCTTCCACTATGATTCACCTCACCGGTATCTCTTTTCTTTCAGTGTGGAAGGAATTAGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATTCGGAGTCTCGAACCATAGACGATAGAATATTAGCTGAAGAAGAGACAAGACGGTTGATCCAAAGGATGATGTCCAAACAAGATACCGATAACTAGCAAATTCTATATGCGTGCATGCACCGATTACCTAGATAGCATGAGACGAGTTACATTGTTCATATCCAATTGAAATATGTTATGTGGCCATCTTGTCAAAAAATAAGGGTCATTATGTAGTTTACTCGTACTCGATATGATATATATTTACAATGAATTATTTTTTATTTTTTTG

mRNA sequence

CTATTTATACACAAATTTTCTTAAAACAATTGATCCCATAAGCTCTTCACAACAAATATAATGGCTGATTCTTCTGCTGCTTACATTCATATGGTGCAACGCTTGATTGAAATGTGTTTGATCTTCCGTATGAATAAAGAAGAGTGCATGGAAGCTGTTTCTAAACACGCCAATATCAACCCTGTAATCACCTCTACTGTGTGGAAGGAATTAGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATTCGGAGTCTCGAACCATAGACGATAGAATATTAGCTGAAGAAGAGACAAGACGGTTGATCCAAAGGATGATGTCCAAACAAGATACCGATAACTAGCAAATTCTATATGCGTGCATGCACCGATTACCTAGATAGCATGAGACGAGTTACATTGTTCATATCCAATTGAAATATGTTATGTGGCCATCTTGTCAAAAAATAAGGGTCATTATGTAGTTTACTCGTACTCGATATGATATATATTTACAATGAATTATTTTTTATTTTTTTG

Coding sequence (CDS)

ATGGCTGATTCTTCTGCTGCTTACATTCATATGGTGCAACGCTTGATTGAAATGTGTTTGATCTTCCGTATGAATAAAGAAGAGTGCATGGAAGCTGTTTCTAAACACGCCAATATCAACCCTGTAATCACCTCTACTGTGTGGAAGGAATTAGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATTCGGAGTCTCGAACCATAGACGATAGAATATTAGCTGAAGAAGAGACAAGACGGTTGATCCAAAGGATGATGTCCAAACAAGATACCGATAACTAG

Protein sequence

MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFEAYSESRTIDDRILAEEETRRLIQRMMSKQDTDN

Homology

[Close]

BLAST of CmoCh04G002410 vs. ExPASy TrEMBL
Match: A0A6J1FWJ0 (uncharacterized protein LOC111448003 OS=Cucurbita moschata OX=3662 GN=LOC111448003 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.5e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60

Query: 61 AYSESRTIDDRILAEEETRRLIQRMMSKQDTDN 94
          AYSESRTIDDRILAEEETRRLIQRMMSKQDTDN
Sbjct: 61 AYSESRTIDDRILAEEETRRLIQRMMSKQDTDN 93

[Close]

BLAST of CmoCh04G002410 vs. ExPASy TrEMBL
Match: A0A6J1JF00 (uncharacterized protein LOC111483901 OS=Cucurbita maxima OX=3661 GN=LOC111483901 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.9e-41
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60
          MADS AAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE
Sbjct: 1  MADSPAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60

Query: 61 AYSESRTIDDRILAEEETRRLIQRMMSKQDTDN 94
          AYSESRTIDDRILAEEETRRLIQR+MSKQDTD+
Sbjct: 61 AYSESRTIDDRILAEEETRRLIQRIMSKQDTDD 93

[Close]

BLAST of CmoCh04G002410 vs. ExPASy TrEMBL
Match: A0A6J1CBZ2 (uncharacterized protein LOC111010170 OS=Momordica charantia OX=3673 GN=LOC111010170 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.5e-33
Identity = 75/92 (81.52%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQ LIE CLIF MNK+ECMEA+SKHANI+P+ITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECMEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYSESRTIDDRILAEEETRRLIQRMMSKQDTD 93
          AY ESR  +DRILAEEETR+LI+RM+SK   D
Sbjct: 61 AYXESRNKNDRILAEEETRQLIERMISKDSDD 92

[Close]

BLAST of CmoCh04G002410 vs. ExPASy TrEMBL
Match: A0A0A0KQ71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G179770 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.2e-33
Identity = 75/92 (81.52%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQ LIE CLIF MNK+EC+EA+SKHANI+P+ITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYSESRTIDDRILAEEETRRLIQRMMSKQDTD 93
          AYSE +  +DRILAEEETR+LIQRMMSK   D
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSDD 92

[Close]

BLAST of CmoCh04G002410 vs. ExPASy TrEMBL
Match: A0A5A7V1X1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00180 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.1e-32
Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQ LIE CLIF MNK+EC+EA+SKHANI+PVITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPVITSTVWKELEKENREFFE 60

Query: 61 AYSESRTIDDRILAEEETRRLIQRMMSKQDTD 93
          AYSE +  +DRILAEEETR+LIQRMM  + +D
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMMSKHSD 92

[Close]

BLAST of CmoCh04G002410 vs. NCBI nr
Match: XP_022943203.1 (uncharacterized protein LOC111448003 [Cucurbita moschata])

HSP 1 Score: 183.3 bits (464), Expect = 9.3e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60

Query: 61 AYSESRTIDDRILAEEETRRLIQRMMSKQDTDN 94
          AYSESRTIDDRILAEEETRRLIQRMMSKQDTDN
Sbjct: 61 AYSESRTIDDRILAEEETRRLIQRMMSKQDTDN 93

[Close]

BLAST of CmoCh04G002410 vs. NCBI nr
Match: XP_023547240.1 (uncharacterized protein LOC111806113 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.9 bits (455), Expect = 1.0e-41
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60

Query: 61 AYSESRTIDDRILAEEETRRLIQRMMSKQDTDN 94
          AYSESRTIDDRIL EEETRRLIQRMMSKQDTD+
Sbjct: 61 AYSESRTIDDRILVEEETRRLIQRMMSKQDTDD 93

[Close]

BLAST of CmoCh04G002410 vs. NCBI nr
Match: XP_022986049.1 (uncharacterized protein LOC111483901 [Cucurbita maxima])

HSP 1 Score: 177.9 bits (450), Expect = 3.9e-41
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60
          MADS AAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE
Sbjct: 1  MADSPAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60

Query: 61 AYSESRTIDDRILAEEETRRLIQRMMSKQDTDN 94
          AYSESRTIDDRILAEEETRRLIQR+MSKQDTD+
Sbjct: 61 AYSESRTIDDRILAEEETRRLIQRIMSKQDTDD 93

[Close]

BLAST of CmoCh04G002410 vs. NCBI nr
Match: KAG6600072.1 (hypothetical protein SDJN03_05305, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.2 bits (448), Expect = 6.7e-41
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITS--TVWKELEKENREF 60
          MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITS  TVWKELEKENREF
Sbjct: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTGTVWKELEKENREF 60

Query: 61 FEAYSESRTIDDRILAEEETRRLIQRMMSKQDTDN 94
          FEAYSESRTIDDRILAEEET+RLIQRMMSKQDTDN
Sbjct: 61 FEAYSESRTIDDRILAEEETKRLIQRMMSKQDTDN 95

[Close]

BLAST of CmoCh04G002410 vs. NCBI nr
Match: XP_022139201.1 (uncharacterized protein LOC111010170 [Momordica charantia])

HSP 1 Score: 151.8 bits (382), Expect = 3.0e-33
Identity = 75/92 (81.52%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MADSSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQ LIE CLIF MNK+ECMEA+SKHANI+P+ITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECMEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYSESRTIDDRILAEEETRRLIQRMMSKQDTD 93
          AY ESR  +DRILAEEETR+LI+RM+SK   D
Sbjct: 61 AYXESRNKNDRILAEEETRQLIZRMISKDSDD 92

[Close]

BLAST of CmoCh04G002410 vs. TAIR 10
Match: AT3G55240.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 117.1 bits (292), Expect = 7.6e-27
Identity = 59/94 (62.77%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MAD-SSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFF 60
          MAD SSA+YIHMVQ +IE CLIF M+KEEC+EA+SKHANI PVITSTVWKELEKEN+EFF
Sbjct: 1  MADSSSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFF 60

Query: 61 EAYSESRTIDDRILAEEETRRLIQRMMSKQDTDN 94
          +AY E ++  ++ ++EEET ++IQ+++S    ++
Sbjct: 61 KAYEERQSKQEQ-MSEEETNQMIQKIISDSSKES 93

[Close]

BLAST of CmoCh04G002410 vs. TAIR 10
Match: AT3G28990.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 105.5 bits (262), Expect = 2.3e-23
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 4  SSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFEAYS 63
          S A YIH+VQ +IE CL F M+KEECMEA+S++ANINP+ITSTVWKEL KEN++FFE Y 
Sbjct: 5  SPAVYIHLVQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFFETY- 64

Query: 64 ESRTIDDRILAEEETRRLIQRMMS 88
          E + +    ++EEET +LIQ ++S
Sbjct: 65 EQKLMKKESMSEEETNQLIQNIIS 87

[Close]

BLAST of CmoCh04G002410 vs. TAIR 10
Match: AT5G02580.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-22
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 4  SSAAYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFEAYS 63
          S A+YIH+V  LIE C++F M KEECM+A+ KHANI P+ITSTVWKEL KEN+EFFEAY 
Sbjct: 7  SQASYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEAYE 66

Query: 64 ESRTIDDRILAEEETRRLIQRMMSK 89
            R   + I  E+ET R I+ ++S+
Sbjct: 67 RRR---EEIPTEKETARRIRDLLSR 88

[Close]

BLAST of CmoCh04G002410 vs. TAIR 10
Match: AT1G10657.2 (Plant protein 1589 of unknown function )

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-13
Identity = 28/56 (50.00%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 7  AYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFEAY 63
          +YI MVQ +IE C++ RM ++EC++A+  HA+I P++T TVW+ L++EN++FFE Y
Sbjct: 22 SYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKDFFETY 77

[Close]

BLAST of CmoCh04G002410 vs. TAIR 10
Match: AT1G10657.3 (Plant protein 1589 of unknown function )

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-13
Identity = 28/56 (50.00%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 7  AYIHMVQRLIEMCLIFRMNKEECMEAVSKHANINPVITSTVWKELEKENREFFEAY 63
          +YI MVQ +IE C++ RM ++EC++A+  HA+I P++T TVW+ L++EN++FFE Y
Sbjct: 22 SYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKDFFETY 77

The following BLAST results are available for this feature:

BLAST of CmoCh04G002410 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G002410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FWJ0	4.5e-43	100.00	uncharacterized protein LOC111448003 OS=Cucurbita moschata OX=3662 GN=LOC1114480...	[more]
A0A6J1JF00	1.9e-41	96.77	uncharacterized protein LOC111483901 OS=Cucurbita maxima OX=3661 GN=LOC111483901...	[more]
A0A6J1CBZ2	2.5e-33	81.52	uncharacterized protein LOC111010170 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A0A0KQ71	3.2e-33	81.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G179770 PE=4 SV=1	[more]
A0A5A7V1X1	2.1e-32	80.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CmoCh04G002410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943203.1	9.3e-43	100.00	uncharacterized protein LOC111448003 [Cucurbita moschata]	[more]
XP_023547240.1	1.0e-41	97.85	uncharacterized protein LOC111806113 [Cucurbita pepo subsp. pepo]	[more]
XP_022986049.1	3.9e-41	96.77	uncharacterized protein LOC111483901 [Cucurbita maxima]	[more]
KAG6600072.1	6.7e-41	96.84	hypothetical protein SDJN03_05305, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022139201.1	3.0e-33	81.52	uncharacterized protein LOC111010170 [Momordica charantia]	[more]

BLAST of CmoCh04G002410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55240.1	7.6e-27	62.77	Plant protein 1589 of unknown function	[more]
AT3G28990.1	2.3e-23	60.71	Plant protein 1589 of unknown function	[more]
AT5G02580.1	1.9e-22	58.82	Plant protein 1589 of unknown function	[more]
AT1G10657.2	2.8e-13	50.00	Plant protein 1589 of unknown function	[more]
AT1G10657.3	2.8e-13	50.00	Plant protein 1589 of unknown function	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006476	Conserved hypothetical protein CHP01589, plant	TIGRFAM	TIGR01589	TIGR01589	coord: 9..63 e-value: 4.7E-23 score: 79.0
IPR006476	Conserved hypothetical protein CHP01589, plant	PFAM	PF09713	A_thal_3526	coord: 12..63 e-value: 3.8E-25 score: 87.9
IPR006476	Conserved hypothetical protein CHP01589, plant	PANTHER	PTHR31871	OS02G0137100 PROTEIN	coord: 1..88
None	No IPR available	PANTHER	PTHR31871:SF18	ANGIOTENSIN-CONVERTING ENZYME 2-RELATED	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G002410.1	CmoCh04G002410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process