CmoCh04G002320 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G002320
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 1163787 .. 1166808 (-)
RNA-Seq ExpressionCmoCh04G002320
SyntenyCmoCh04G002320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGCGGCAAGACCTTTCTGTGATGATTGAAGTTTGAAGATTAAACTTCTCCGTATAATGTGAACGGAAATGGAAATGTAGCGTTTGATGGAAGGCGATAATTTCTAGTCCGCTGCGCAGTCGTCATTGCCCAGTAAACCGCTCTTCTTTTTCCGTTTTTTGCTTTGATAATCATGCCTCTCATTGTTAACCTTAATCGAATGCTTGAATCGTGCTAGAAATTTCGCATTCAGTTTCGTAATGGTTGAAATTTCAGGGGAGGGGAGGGGGTTGGTATAGCTAATCACATTCTACGATTTGGTTATAGGCCTAAAATACCGCCAAATTTCCAGTTCCCATTGGAAGTTTGCGCCCTACATGATCTGTATTTTCTTTATGTTGAATATCAGAAATGAATTTTCTATTGGATTTGTATCATCAAGCTCTTATCTCGTTTATCTCATGTTTTTCCCTCGTTAAATCCCTAATTATGTTGATGAGAATTATGATCGCTTCATTCTAGGTTGGGGTATCAATAGAACAGCAGGAAATTGTACAGAAACGACCTCAATAGTTAGTTCCATTTACATTGAGCAACAATTTTCATAGTGGAACAAGTTGGTTTGGGGAGGGACAAGTTTTGTTGTTATCAATCTGAACAGAAACACGAGAATTTGGAATGTTGTAAGAAAATGCATTGTAATTACAGTAAACTAAACGCATGAAACTCGTTGTGTGATCAAACATGGCTAGTAAGAACATTTGACAATCTTCTTTTTGTTGAATATTTCAAACAGGAGAGAAAAAGAAGAAGAAGAACCATGGTTTTGCCTGAGAGTGGGGCTTGCGTGTGTATAGGTAAAAAGTATAGCAAGTTGTTGGGATAATGATGTTAGAGCTTTTCTTGTTTGACTTTGCAGTTCAAGGATGGCGTTCTTCAATTCCACCTCAACTTTTTGTATTCTGCTAACTACTGTGGACGAACATTACAGGCGAGGAAGGTTAGCGGTTAGAATTAGTTTTGATTTTGAAAATTGAATACAAATTTGGAAATGGTTGGTTACGTTATGCCTTGTGATATGAACTCTATATTTGGCCCCTAAGACCATGAACTTGCGTTAGTCCAAAAGTAAGACTAGACTGGACCTCTTGCATTTATACTTTGAAAGCTCTGTTCATTAAAGCTACTTTTGGCTTTTGGGGATCCAAAGTGGCAAAGACAAACATGTTTTTGGCTACACTCACTACCTTGCTTTAATGTTGGAGCTTCAAATTTTCATCTCCACATTTGTTGAACTCTAAAAACGAAAAAAACAAAAATATGTCAGTTTCAAGTTCTTGATTTCTATTTTCGTTAGTTCAACAAGTGGGGTGGGGAGAGATAGTTAGATGTCGAGTCGGGGTGAAATGGTGAACTCGCCTAGATGATGCTTGCACATGGTTGTCTGACGCTCGCTACTCGGTGTTTGCTTTTCACTAAGATGAGACGCCCTATAGAACCTATGACCTTTTAATCGAGAGCATATGTTATTAGAAAAGCTATGTGTAGACTAAATCATTAAAGACAAATTGAAAAAATGGTGGCAAGGACTTTACTATTTGTTCCATGTATGTAGGCATGTTTTGGTTGTTACTACAGGTGCTGGCCATGTACAGGGGTATATGGCTCCTGGCGTCGAAACGTCTCCTTTGTAATGGGAACTTGACGACGAATTTACAACTACCATTGCTATTGGTCTCTTTTTTTTTTTTAGCTTGAGTAGAAAATTCCTGAAAGGTGGCTAAATTGTTTAACACCATTGACTTTTGGCTTATATTTGTGTGAACTAGTAGTTTAAAGAAGCAGCCTTTTTTTTGTTTGAAGCAGCCTTGTTTTTGTTTGTTCTTACTGTTTTCCATGTGTGCTGCTAAACAACTAACCCACCTGGTAATTAACACTCCAGAATTTACATTTCAGAGGGCAAGATTTTCAAACATCAAGATTCTTATCAGCATCAGTGTTATGCTGAAGAACTCGAGACACCGTGCGAAATAGGTAACCGTACATGATTATGCTCTTTCAGTTTGATGTTCAAACCTTTGGGACTGCCTGCTTGGATTATAAATGGTAGCTGACCTTAGTTTTCAGGACACTGCTTGTTGTCATTGACCACAGAAGGAGATTCGGCTAAGATTTCCTAGCTGTCATTAAGACGTTCTAGCAATTAAGGTTTCAACGATAAGATCAAAAAGATTGCTTGAGCTTTATTCGAAATCTAGTGTGCAAATGGCTCCGTACTTGCTTAAGTCAATGCATATCTCTCAACAAGTCACCAATAAGGTGAGAATAATATGAAGTGGACTAATCTTAATTTGATTTGTTTATGAGCATTTAGTCTTGACTTTTCTAGAGCCCCTTCCTTGACTTCACATCAAATGCAAGCTACACGACGATACCTGACCCCGAGTACTGGGTGTAGAGGTATACTTTAAAATATAGCTTTGTATGAATCAACTGCTGAATTTATTAATCTTTGGATGTTTTTTTTTTATTATTATTATTATTATTGGAGGATATTCCTTTTAATGCTTGGAACGATTGAGCTCTAGCCATTGAGACGTATGTCTATGACTAAAAGATCGAAAGTTAAAATCTCTCCACTCACATGTTGAACTAAACGAACTGTTTTATAGAACGGTGATGGATGCAGTTTGTATGGCTCTCCGAACCAGGCGAGATAGTTTCCTATCACTAGGCTCACTGATATCTTTAAGAGTTTCAGTTGAACAGGTGCACTCACTGAAGGAAGCTTTCCGACGCGGAAGAGACCAATTCCACTAGTTCGGATTAGGAAAGAGCAGGTGCAAGTAGAGAAGAGAACACTTACCATTGACCTCACCCGATAGATATGCAATAAATGAATAAATAACTGAGTTTACTTTTTGCCTTAGCTTTTCATTTTTATACTCAATGTCACCACTTGTTTGAAATTCCCTGCATTTGGTACTCTCTTCCTTCCTCCATCATCCAATGAATATGTTTCTTTGCATTGGAACCCTCTCT

mRNA sequence

CAGGCGGCAAGACCTTTCTGTGATGATTGAAGTTTGAAGATTAAACTTCTCCGTATAATGTGAACGGAAATGGAAATGTAGCGTTTGATGGAAGGCGATAATTTCTAGTCCGCTGCGCAGTCGTCATTGCCCAGAGAGAAAAAGAAGAAGAAGAACCATGGTTTTGCCTGAGAGTGGGGCTTGCGTGTGTATAGGTAAAAAGTATAGCAAGTTGTTGGGATAATGATGTTAGAGCTTTTCTTGTTTGACTTTGCAGTTCAAGGATGGCGTTCTTCAATTCCACCTCAACTTTTTGTATTCTGCTAACTACTGTGGACGAACATTACAGGCGAGGAAGAATTTACATTTCAGAGGGCAAGATTTTCAAACATCAAGATTCTTATCAGCATCAGTGTTATGCTGAAGAACTCGAGACACCGTGCGAAATAGGACACTGCTTGTTGTCATTGACCACAGAAGGAGATTCGGCTAAGATTTCCTAGCTGTCATTAAGACGTTCTAGCAATTAAGGTTTCAACGATAAGATCAAAAAGATTGCTTGAGCTTTATTCGAAATCTAGTGTGCAAATGGCTCCGTACTTGCTTAAGTCAATGCATATCTCTCAACAAGTCACCAATAAGAGCCCCTTCCTTGACTTCACATCAAATGCAAGCTACACGACGATACCTGACCCCGAGTACTGGGTGTAGAGTTGAACAGGTGCACTCACTGAAGGAAGCTTTCCGACGCGGAAGAGACCAATTCCACTAGTTCGGATTAGGAAAGAGCAGGTGCAAGTAGAGAAGAGAACACTTACCATTGACCTCACCCGATAGATATGCAATAAATGAATAAATAACTGAGTTTACTTTTTGCCTTAGCTTTTCATTTTTATACTCAATGTCACCACTTGTTTGAAATTCCCTGCATTTGGTACTCTCTTCCTTCCTCCATCATCCAATGAATATGTTTCTTTGCATTGGAACCCTCTCT

Coding sequence (CDS)

ATGGCGTTCTTCAATTCCACCTCAACTTTTTGTATTCTGCTAACTACTGTGGACGAACATTACAGGCGAGGAAGAATTTACATTTCAGAGGGCAAGATTTTCAAACATCAAGATTCTTATCAGCATCAGTGTTATGCTGAAGAACTCGAGACACCGTGCGAAATAGGACACTGCTTGTTGTCATTGACCACAGAAGGAGATTCGGCTAAGATTTCCTAG

Protein sequence

MAFFNSTSTFCILLTTVDEHYRRGRIYISEGKIFKHQDSYQHQCYAEELETPCEIGHCLLSLTTEGDSAKIS
Homology
[Close]
BLAST of CmoCh04G002320 vs. NCBI nr
Match: KAG6600064.1 (hypothetical protein SDJN03_05297, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 7.0e-30
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0 

Query: 1  MAFFNSTSTFCILLTTVDEHYRRGRIYISEGKIFKHQDSYQHQCYAEELETPCEIGHCLL 60
          MAFFNSTSTFCILLTTVDEHY   RIYISEGKIFKHQDSY+HQCYAEELETPCEIGHCLL
Sbjct: 1  MAFFNSTSTFCILLTTVDEHY---RIYISEGKIFKHQDSYRHQCYAEELETPCEIGHCLL 60

Query: 61 SLTTEGDSAKIS 73
          SLTTEGDSAKIS
Sbjct: 61 SLTTEGDSAKIS 69

The following BLAST results are available for this feature:
BLAST of CmoCh04G002320 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G002320 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G002320 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600064.17.0e-3094.44hypothetical protein SDJN03_05297, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh04G002320 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G002320.1CmoCh04G002320.1mRNA