CmoCh04G002180 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G002180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CASP-like protein
Location	Cmo_Chr04: 1102780 .. 1103954 (-)
RNA-Seq Expression	CmoCh04G002180
Synteny	CmoCh04G002180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTCCTTCTCTTTCTGTAGCTCTTGGCGACTGGACCGGCAGCGGCGGCGGCGGCAGCGGCTATGCGATCCCCTCAGTCCCTCCGCAACGGCGGAATGTCATCGCCTCATGCTCGAATGCCTACTCCTCACCACCACCACCACTTCCACTCCACTGTCTCTGTTCAGAAACTCAAGCGCTTCAACTCTCTCATCCTCGTCTTCCGTCTATCTACCTTCTGCTTCTCCCTCGCCTCCGCTGTCTTCATGATTACTAACTCTCGCGGCTCTGGATCCGATTCCCCTCGCTGGTACGATTTCGACGCCTTCAGGTACGCTTCTCTTTCTTCTCCGATTATCGCGTCGACCTTGTTTCTGTTTCGCTTTGGTTCATGAGAAAATTTAGGTTATAAGGAATGGACTATTTGGCTCGTTCATCTTCGTTCTCCTGAAAACTAAACGCGGATTGAATTCGTTGAAATGAACTCTAACAACGATTGAGAATCTTCAACCAGGTACGTTTTCGCGGCGAACGCCATAGTCGCAGTGTACTCACTGTTTGAAATGATCGCTTCCGTGTGGGAAATCTCGAGAGAAGTGACTCTCTTCCCTGAGATTTTACAAGTCTGGTTCGACTTCGGCCATGACCAGGTCGAAACCCTAGCCCCTTCCTTCTCTTTCTCTTTCTCTTTCTCTCTCTTCTGGTCTAATCGGAATTAGGGCTCTGATTCCATAGGCGTTTGCATACCTCCTCCTCTCTGCGGATTCGGCAGGGACGGCTCTCGCGATAACTCTGAGGGGAACCGACACGTGTAGGGTGACGACCGCCTTTTGCGTTCAATCAACGATCTCGATTGCACTGGGATTCGCCGGTTTCCTGTTTCTCGGGTTATCGACGCTGCTTTCGGGTTTTCGGGTCGTCTGTTTCGTAATCAACGGCTCTCGTTTTCATTTCTAACCCTGAAACTCCGACAGCCGAATATTTTGATGCGTCATGTCGTTTTGATTTGGCTAATTACATCTCTCGGTCCTTCATCTTTTGATTTTTTCCCATTTGGTCCTTCATTTTACTTATCTCAATATATTAAAAGTTCTCAGTTAAAATTTAGCTCAAATGTATTAAAAAAATTCTAATTAATTATTTTAAAAAATTATAATTAGTTAAATTTTGTGAATTTTTGTTTTGTTTACGG

mRNA sequence

ATGTATCTCTTGGCGACTGGACCGGCAGCGGCGGCGGCGGCAGCGGCTATGCGATCCCCTCAGTCCCTCCGCAACGGCGGAATGTCATCGCCTCATGCTCGAATGCCTACTCCTCACCACCACCACCACTTCCACTCCACTGTCTCTGTTCAGAAACTCAAGCGCTTCAACTCTCTCATCCTCGTCTTCCGTCTATCTACCTTCTGCTTCTCCCTCGCCTCCGCTGTCTTCATGATTACTAACTCTCGCGGCTCTGGATCCGATTCCCCTCGCTGGTACGATTTCGACGCCTTCAGGTACGCTTCTCTTTCTTCTCCGATTATCGCGTCGACCTTGTACGTTTTCGCGGCGAACGCCATAGTCGCAGTGTACTCACTGTTTGAAATGATCGCTTCCGTGTGGGAAATCTCGAGAGAAGTGACTCTCTTCCCTGAGATTTTACAAGTCTGGTTCGACTTCGGCCATGACCAGGCGTTTGCATACCTCCTCCTCTCTGCGGATTCGGCAGGGACGGCTCTCGCGATAACTCTGAGGGGAACCGACACGTGTAGGGTGACGACCGCCTTTTGCGTTCAATCAACGATCTCGATTGCACTGGGATTCGCCGGTTTCCTGTTTCTCGGGTTATCGACGCTGCTTTCGGGTTTTCGGGTCGTCTGTTTCGTAATCAACGGCTCTCGTTTTCATTTCTAACCCTGAAACTCCGACAGCCGAATATTTTGATGCGTCATGTCGTTTTGATTTGGCTAATTACATCTCTCGGTCCTTCATCTTTTGATTTTTTCCCATTTGGTCCTTCATTTTACTTATCTCAATATATTAAAAGTTCTCAGTTAAAATTTAGCTCAAATGTATTAAAAAAATTCTAATTAATTATTTTAAAAAATTATAATTAGTTAAATTTTGTGAATTTTTGTTTTGTTTACGG

Coding sequence (CDS)

ATGTATCTCTTGGCGACTGGACCGGCAGCGGCGGCGGCGGCAGCGGCTATGCGATCCCCTCAGTCCCTCCGCAACGGCGGAATGTCATCGCCTCATGCTCGAATGCCTACTCCTCACCACCACCACCACTTCCACTCCACTGTCTCTGTTCAGAAACTCAAGCGCTTCAACTCTCTCATCCTCGTCTTCCGTCTATCTACCTTCTGCTTCTCCCTCGCCTCCGCTGTCTTCATGATTACTAACTCTCGCGGCTCTGGATCCGATTCCCCTCGCTGGTACGATTTCGACGCCTTCAGGTACGCTTCTCTTTCTTCTCCGATTATCGCGTCGACCTTGTACGTTTTCGCGGCGAACGCCATAGTCGCAGTGTACTCACTGTTTGAAATGATCGCTTCCGTGTGGGAAATCTCGAGAGAAGTGACTCTCTTCCCTGAGATTTTACAAGTCTGGTTCGACTTCGGCCATGACCAGGCGTTTGCATACCTCCTCCTCTCTGCGGATTCGGCAGGGACGGCTCTCGCGATAACTCTGAGGGGAACCGACACGTGTAGGGTGACGACCGCCTTTTGCGTTCAATCAACGATCTCGATTGCACTGGGATTCGCCGGTTTCCTGTTTCTCGGGTTATCGACGCTGCTTTCGGGTTTTCGGGTCGTCTGTTTCGTAATCAACGGCTCTCGTTTTCATTTCTAA

Protein sequence

MYLLATGPAAAAAAAAMRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAVFMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMIASVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTISIALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF

Homology

[Close]

BLAST of CmoCh04G002180 vs. ExPASy Swiss-Prot
Match: B9SR15 (CASP-like protein 4C1 OS=Ricinus communis OX=3988 GN=RCOM_0464280 PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.2e-73
Identity = 158/216 (73.15%), Postives = 168/216 (77.78%), Query Frame = 0


Query: 17  MRSPQSLRNGGMSSPH---ARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLA 76
           MRSPQSLRNG   SP     R PTP    HFHSTVS+QKLKRFN LILVFRLSTFCFSLA
Sbjct: 1   MRSPQSLRNGETPSPSPRPPRFPTP----HFHSTVSLQKLKRFNLLILVFRLSTFCFSLA 60

Query: 77  SAVFMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMIASV 136
           S+VFM+TN        P WY FDAFR             YVFAANAIVA+YSLFEM ASV
Sbjct: 61  SSVFMLTN--------PTWYHFDAFR-------------YVFAANAIVAIYSLFEMAASV 120

Query: 137 WEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQS 196
           WEISR  TLFPEILQVWFDFGHDQ FAYLLLSADSA TALA TL+G DTC  + AFCVQS
Sbjct: 121 WEISRGNTLFPEILQVWFDFGHDQVFAYLLLSADSAATALAKTLKGGDTCAASNAFCVQS 180

Query: 197 TISIALGFAGFLFLGLSTLLSGFRVVCFVINGSRFH 230
            I+IALGFAGFLFLGLS+LLSGFRVVCF+INGSRF+
Sbjct: 181 YIAIALGFAGFLFLGLSSLLSGFRVVCFLINGSRFY 191

[Close]

BLAST of CmoCh04G002180 vs. ExPASy Swiss-Prot
Match: B9HTK2 (CASP-like protein 4C2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_822486 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 7.4e-68
Identity = 147/213 (69.01%), Postives = 161/213 (75.59%), Query Frame = 0


Query: 17  MRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 76
           MRSPQ  R+GG +             HF STVSVQKLKRFNSLILVFR + FCFSLASAV
Sbjct: 1   MRSPQPHRSGGDT-----------QQHFQSTVSVQKLKRFNSLILVFRFAAFCFSLASAV 60

Query: 77  FMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMIASVWEI 136
           FM+TNSR  GSDS  WY+FDAFR             YVFAANAIVA+YSLFEM ASVWEI
Sbjct: 61  FMLTNSR--GSDSLHWYNFDAFR-------------YVFAANAIVAIYSLFEMAASVWEI 120

Query: 137 SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS 196
           SR  TLFPEI QVWFDFGHDQ FAYLLLSA++AGT LA TL+  DTC    AFCVQS I+
Sbjct: 121 SRNATLFPEICQVWFDFGHDQVFAYLLLSANTAGTELARTLK--DTCTDNKAFCVQSDIA 180

Query: 197 IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFH 230
           I LGFAGFLFLG+S+L SGFRVVCF+INGSRF+
Sbjct: 181 IVLGFAGFLFLGISSLFSGFRVVCFIINGSRFY 185

[Close]

BLAST of CmoCh04G002180 vs. ExPASy Swiss-Prot
Match: B9HMF8 (CASP-like protein 4C1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_820327 PE=3 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 2.4e-66
Identity = 142/213 (66.67%), Postives = 158/213 (74.18%), Query Frame = 0


Query: 17  MRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 76
           MR PQ  RNGG +             HFHST+S+QKLKRFNSLILVFR S FCFSLASAV
Sbjct: 1   MRFPQPHRNGGET-----------QQHFHSTISLQKLKRFNSLILVFRFSAFCFSLASAV 60

Query: 77  FMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMIASVWEI 136
           FM+TNSR  GSDS  WY+FDAFR             YVFAANAIVAVYSLFEM A+VWEI
Sbjct: 61  FMLTNSR--GSDSFHWYNFDAFR-------------YVFAANAIVAVYSLFEMTAAVWEI 120

Query: 137 SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS 196
           SR  TLFPE+ QVWFDFGHDQ FAYLLLSA+S GT +A T++  D C     FCVQS I+
Sbjct: 121 SRNATLFPEVCQVWFDFGHDQVFAYLLLSANSTGTEMARTMK--DACTDNKPFCVQSDIA 180

Query: 197 IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFH 230
           IALGF GFLFLG+S+L SGFRVVCF+INGSRF+
Sbjct: 181 IALGFVGFLFLGVSSLFSGFRVVCFIINGSRFY 185

[Close]

BLAST of CmoCh04G002180 vs. ExPASy Swiss-Prot
Match: Q9M2U0 (CASP-like protein 4C1 OS=Arabidopsis thaliana OX=3702 GN=At3g55390 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.2e-63
Identity = 133/213 (62.44%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 17  MRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 76
           MRSP + RNG         PT   H HFHSTV+ QKL+RFNSLIL+ RL++F FSLASAV
Sbjct: 1   MRSPHAFRNG-------ESPTLRDHTHFHSTVTAQKLRRFNSLILLLRLASFSFSLASAV 60

Query: 77  FMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMIASVWEI 136
           FM+TNSRGS   SP WYDFDAFR             +VF ANAIVA+YS+FEM   VWE 
Sbjct: 61  FMLTNSRGSA--SPHWYDFDAFR-------------FVFVANAIVALYSVFEMGTCVWEF 120

Query: 137 SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS 196
           SRE TL+PE  QVWFDFGHDQ F+YLLLSA SA  ALA T+RG DTC    AFC+QS ++
Sbjct: 121 SRETTLWPEAFQVWFDFGHDQVFSYLLLSAGSAAAALARTMRGGDTCTANKAFCLQSDVA 180

Query: 197 IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFH 230
           I LGFA FLFL  S+  SGFRV CF+I GSRFH
Sbjct: 181 IGLGFAAFLFLAFSSCFSGFRVACFLITGSRFH 191

[Close]

BLAST of CmoCh04G002180 vs. ExPASy Swiss-Prot
Match: A9T836 (CASP-like protein 4C3 OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_192523 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.7e-30
Identity = 81/184 (44.02%), Postives = 102/184 (55.43%), Query Frame = 0


Query: 43  HFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAVFMITN-SRGSGSDSPRWYDFDAFRYA 102
           H++   + QK +R N +IL+FR  TF FSL S + M TN  R        WYDFD FR  
Sbjct: 15  HYYGKSTAQKHRRSNGIILIFRALTFSFSLTSVIVMGTNRHRIDAQSRVAWYDFDPFR-- 74

Query: 103 SLSSPIIASTLYVFAANAIVAVYSLFEMIASVWEISREVTLFPEILQVWFDFGHDQAFAY 162
                      YV A NAI+ +YS  E+  +V+   ++    PE  QVWFD+GHDQ FAY
Sbjct: 75  -----------YVLAVNAIICIYSFVEIWLAVYTYLKDTLFLPETFQVWFDYGHDQGFAY 134

Query: 163 LLLSADSAGTALAITLR-------GTDTCRVTTAFCVQSTISIALGFAGFLFLGLSTLLS 219
           LL SA+SAG A+A  L+       G   C     FC Q+  SI LGF  FLFL LS+LL+
Sbjct: 135 LLFSANSAGIAMAQLLQSGNSLIHGAYRCSDAGVFCTQARASIGLGFGAFLFLALSSLLT 185

[Close]

BLAST of CmoCh04G002180 vs. ExPASy TrEMBL
Match: A0A6J1FUB8 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111447351 PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.6e-103
Identity = 201/214 (93.93%), Postives = 201/214 (93.93%), Query Frame = 0


Query: 17  MRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 76
           MRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV
Sbjct: 1   MRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 60

Query: 77  FMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMIASVWEI 136
           FMITNSRGSGSDSPRWYDFDAFR             YVFAANAIVAVYSLFEMIASVWEI
Sbjct: 61  FMITNSRGSGSDSPRWYDFDAFR-------------YVFAANAIVAVYSLFEMIASVWEI 120

Query: 137 SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS 196
           SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS
Sbjct: 121 SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS 180

Query: 197 IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF 231
           IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF
Sbjct: 181 IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF 201

[Close]

BLAST of CmoCh04G002180 vs. ExPASy TrEMBL
Match: A0A6J1JHP8 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485192 PE=3 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.8e-102
Identity = 200/214 (93.46%), Postives = 200/214 (93.46%), Query Frame = 0


Query: 17  MRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 76
           MRSPQSLRNGG SSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV
Sbjct: 1   MRSPQSLRNGGTSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 60

Query: 77  FMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMIASVWEI 136
           FMITNSRGSGSDSPRWYDFDAFR             YVFAANAIVAVYSLFEMIASVWEI
Sbjct: 61  FMITNSRGSGSDSPRWYDFDAFR-------------YVFAANAIVAVYSLFEMIASVWEI 120

Query: 137 SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS 196
           SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS
Sbjct: 121 SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS 180

Query: 197 IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF 231
           IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF
Sbjct: 181 IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF 201

[Close]

BLAST of CmoCh04G002180 vs. ExPASy TrEMBL
Match: A0A0A0KNW2 (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G182050 PE=3 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 9.6e-95
Identity = 192/219 (87.67%), Postives = 198/219 (90.41%), Query Frame = 0


Query: 17  MRSPQSLRNGGMS-----SPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFS 76
           MRSPQSLRNGG+      SPHAR+PTP  HHHFHSTVSVQKLKRFNSLILVFRLSTFCFS
Sbjct: 1   MRSPQSLRNGGVGGGGTPSPHARIPTP--HHHFHSTVSVQKLKRFNSLILVFRLSTFCFS 60

Query: 77  LASAVFMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMIA 136
           LASAVFMITNSRGSGSDSPRWYDFDAFR             YVFAANAIVAVYSLFEMIA
Sbjct: 61  LASAVFMITNSRGSGSDSPRWYDFDAFR-------------YVFAANAIVAVYSLFEMIA 120

Query: 137 SVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCV 196
           SVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITL+GTDTC+VT+AFCV
Sbjct: 121 SVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLKGTDTCKVTSAFCV 180

Query: 197 QSTISIALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF 231
           QSTISIALGFAGFLFLGLS+LLSGFRVVCFVINGSRFHF
Sbjct: 181 QSTISIALGFAGFLFLGLSSLLSGFRVVCFVINGSRFHF 204

[Close]

BLAST of CmoCh04G002180 vs. ExPASy TrEMBL
Match: A0A6J1JST8 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111488036 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.8e-94
Identity = 189/213 (88.73%), Postives = 193/213 (90.61%), Query Frame = 0


Query: 17  MRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 76
           MRSPQSLRNGG  SPHAR+PTP  HHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV
Sbjct: 1   MRSPQSLRNGGTPSPHARIPTP--HHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 60

Query: 77  FMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMIASVWEI 136
           FMITNSRGSGSDSPRWYDFDAFR             YVFAANAIVAVYSLFEMIASVWEI
Sbjct: 61  FMITNSRGSGSDSPRWYDFDAFR-------------YVFAANAIVAVYSLFEMIASVWEI 120

Query: 137 SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS 196
           SREVT+FPEILQVWFDFGHDQAFAYLLLSA SAGTAL ITLRGTDTCR T+AFCVQSTIS
Sbjct: 121 SREVTIFPEILQVWFDFGHDQAFAYLLLSAGSAGTALLITLRGTDTCRATSAFCVQSTIS 180

Query: 197 IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFH 230
           IALGFAGFLFLGLS+LLSGFRVVCFVINGSRFH
Sbjct: 181 IALGFAGFLFLGLSSLLSGFRVVCFVINGSRFH 198

[Close]

BLAST of CmoCh04G002180 vs. ExPASy TrEMBL
Match: A0A5D3BVM1 (CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00170 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.8e-93
Identity = 191/222 (86.04%), Postives = 196/222 (88.29%), Query Frame = 0


Query: 17  MRSPQSLRN--------GGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTF 76
           MRSP SLRN        GG  SPHAR+PTP  HHHFHSTVSVQKLKRFNSLILVFRLSTF
Sbjct: 1   MRSPHSLRNGGGGGGGGGGTPSPHARIPTP--HHHFHSTVSVQKLKRFNSLILVFRLSTF 60

Query: 77  CFSLASAVFMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFE 136
           CFSLASAVFMITNSRGSGSDSPRWYDFDAFR             YVFAANAIVAVYSLFE
Sbjct: 61  CFSLASAVFMITNSRGSGSDSPRWYDFDAFR-------------YVFAANAIVAVYSLFE 120

Query: 137 MIASVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTA 196
           MIASVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITL+GTDTC+VT+A
Sbjct: 121 MIASVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLKGTDTCKVTSA 180

Query: 197 FCVQSTISIALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF 231
           FCVQSTISIALGFAGFLFLGLS+LLSGFRVVCFVINGSRFHF
Sbjct: 181 FCVQSTISIALGFAGFLFLGLSSLLSGFRVVCFVINGSRFHF 207

[Close]

BLAST of CmoCh04G002180 vs. NCBI nr
Match: XP_022942248.1 (CASP-like protein 4C1 [Cucurbita moschata] >XP_023547993.1 CASP-like protein 4C1 [Cucurbita pepo subsp. pepo] >KAG7030724.1 CASP-like protein 4C2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 382.9 bits (982), Expect = 2.0e-102
Identity = 201/214 (93.93%), Postives = 201/214 (93.93%), Query Frame = 0


Query: 17  MRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 76
           MRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV
Sbjct: 1   MRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 60

Query: 77  FMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMIASVWEI 136
           FMITNSRGSGSDSPRWYDFDAFR             YVFAANAIVAVYSLFEMIASVWEI
Sbjct: 61  FMITNSRGSGSDSPRWYDFDAFR-------------YVFAANAIVAVYSLFEMIASVWEI 120

Query: 137 SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS 196
           SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS
Sbjct: 121 SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS 180

Query: 197 IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF 231
           IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF
Sbjct: 181 IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF 201

[Close]

BLAST of CmoCh04G002180 vs. NCBI nr
Match: XP_022987730.1 (CASP-like protein 4C1 [Cucurbita maxima])

HSP 1 Score: 380.6 bits (976), Expect = 9.8e-102
Identity = 200/214 (93.46%), Postives = 200/214 (93.46%), Query Frame = 0


Query: 17  MRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 76
           MRSPQSLRNGG SSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV
Sbjct: 1   MRSPQSLRNGGTSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 60

Query: 77  FMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMIASVWEI 136
           FMITNSRGSGSDSPRWYDFDAFR             YVFAANAIVAVYSLFEMIASVWEI
Sbjct: 61  FMITNSRGSGSDSPRWYDFDAFR-------------YVFAANAIVAVYSLFEMIASVWEI 120

Query: 137 SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS 196
           SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS
Sbjct: 121 SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS 180

Query: 197 IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF 231
           IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF
Sbjct: 181 IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF 201

[Close]

BLAST of CmoCh04G002180 vs. NCBI nr
Match: KAG6600052.1 (CASP-like protein 4C2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 368.6 bits (945), Expect = 3.9e-98
Identity = 199/212 (93.87%), Postives = 199/212 (93.87%), Query Frame = 0


Query: 3   LLATGPAAAAAAAAMRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILV 62
           LLATGPAAAAAAAAMRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILV
Sbjct: 14  LLATGPAAAAAAAAMRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILV 73

Query: 63  FRLSTFCFSLASAVFMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVA 122
           FRLSTFCFSLASAVFMITNSRGSGSDSPRWYDFDAFR             YVFAANAIVA
Sbjct: 74  FRLSTFCFSLASAVFMITNSRGSGSDSPRWYDFDAFR-------------YVFAANAIVA 133

Query: 123 VYSLFEMIASVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDT 182
           VYSLFEMIASVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDT
Sbjct: 134 VYSLFEMIASVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDT 193

Query: 183 CRVTTAFCVQSTISIALGFAGFLFLGLSTLLS 215
           CRVTTAFCVQSTISIALGFAGFLFLGLSTLLS
Sbjct: 194 CRVTTAFCVQSTISIALGFAGFLFLGLSTLLS 212

[Close]

BLAST of CmoCh04G002180 vs. NCBI nr
Match: XP_004147690.1 (CASP-like protein 4C1 [Cucumis sativus] >KGN50549.1 hypothetical protein Csa_021394 [Cucumis sativus])

HSP 1 Score: 356.3 bits (913), Expect = 2.0e-94
Identity = 192/219 (87.67%), Postives = 198/219 (90.41%), Query Frame = 0


Query: 17  MRSPQSLRNGGMS-----SPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFS 76
           MRSPQSLRNGG+      SPHAR+PTP  HHHFHSTVSVQKLKRFNSLILVFRLSTFCFS
Sbjct: 1   MRSPQSLRNGGVGGGGTPSPHARIPTP--HHHFHSTVSVQKLKRFNSLILVFRLSTFCFS 60

Query: 77  LASAVFMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMIA 136
           LASAVFMITNSRGSGSDSPRWYDFDAFR             YVFAANAIVAVYSLFEMIA
Sbjct: 61  LASAVFMITNSRGSGSDSPRWYDFDAFR-------------YVFAANAIVAVYSLFEMIA 120

Query: 137 SVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCV 196
           SVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITL+GTDTC+VT+AFCV
Sbjct: 121 SVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLKGTDTCKVTSAFCV 180

Query: 197 QSTISIALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF 231
           QSTISIALGFAGFLFLGLS+LLSGFRVVCFVINGSRFHF
Sbjct: 181 QSTISIALGFAGFLFLGLSSLLSGFRVVCFVINGSRFHF 204

[Close]

BLAST of CmoCh04G002180 vs. NCBI nr
Match: XP_038893216.1 (CASP-like protein 4C1 [Benincasa hispida])

HSP 1 Score: 355.1 bits (910), Expect = 4.4e-94
Identity = 192/220 (87.27%), Postives = 197/220 (89.55%), Query Frame = 0


Query: 17  MRSPQSLRNGGMS------SPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCF 76
           MRSPQSLRNGG        SPHAR+PTP  HHHFHSTVSVQKLKRFNSLILVFRLSTFCF
Sbjct: 1   MRSPQSLRNGGAGGGGGTPSPHARIPTP--HHHFHSTVSVQKLKRFNSLILVFRLSTFCF 60

Query: 77  SLASAVFMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMI 136
           SLASAVFMITNSRGSGSDSPRWYDFDAFR             YVFAANAIVAVYSLFEMI
Sbjct: 61  SLASAVFMITNSRGSGSDSPRWYDFDAFR-------------YVFAANAIVAVYSLFEMI 120

Query: 137 ASVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFC 196
           ASVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITL+GTDTC+VT+AFC
Sbjct: 121 ASVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLKGTDTCKVTSAFC 180

Query: 197 VQSTISIALGFAGFLFLGLSTLLSGFRVVCFVINGSRFHF 231
           VQSTISIALGFAGFLFLGLS+LLSGFRVVCFVINGSRFHF
Sbjct: 181 VQSTISIALGFAGFLFLGLSSLLSGFRVVCFVINGSRFHF 205

[Close]

BLAST of CmoCh04G002180 vs. TAIR 10
Match: AT3G55390.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 242.7 bits (618), Expect = 3.0e-64
Identity = 133/213 (62.44%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 17  MRSPQSLRNGGMSSPHARMPTPHHHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAV 76
           MRSP + RNG         PT   H HFHSTV+ QKL+RFNSLIL+ RL++F FSLASAV
Sbjct: 1   MRSPHAFRNG-------ESPTLRDHTHFHSTVTAQKLRRFNSLILLLRLASFSFSLASAV 60

Query: 77  FMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAANAIVAVYSLFEMIASVWEI 136
           FM+TNSRGS   SP WYDFDAFR             +VF ANAIVA+YS+FEM   VWE 
Sbjct: 61  FMLTNSRGSA--SPHWYDFDAFR-------------FVFVANAIVALYSVFEMGTCVWEF 120

Query: 137 SREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCRVTTAFCVQSTIS 196
           SRE TL+PE  QVWFDFGHDQ F+YLLLSA SA  ALA T+RG DTC    AFC+QS ++
Sbjct: 121 SRETTLWPEAFQVWFDFGHDQVFSYLLLSAGSAAAALARTMRGGDTCTANKAFCLQSDVA 180

Query: 197 IALGFAGFLFLGLSTLLSGFRVVCFVINGSRFH 230
           I LGFA FLFL  S+  SGFRV CF+I GSRFH
Sbjct: 181 IGLGFAAFLFLAFSSCFSGFRVACFLITGSRFH 191

[Close]

BLAST of CmoCh04G002180 vs. TAIR 10
Match: AT1G79780.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 51.2 bits (121), Expect = 1.3e-06
Identity = 35/109 (32.11%), Postives = 54/109 (49.54%), Query Frame = 0


Query: 113 YVFAANAIVAVYSLFEMIASVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTA 172
           YV  A A   +YSL ++   V+ +     + P   Q W  F  DQ F YL++SA SAG+ 
Sbjct: 72  YVVGACAGTVLYSLLQLCLGVYRLVTGSPITPSRFQAWLCFTSDQLFCYLMMSAGSAGSG 131

Query: 173 LA----ITLRGT---DTCRVTTAFCVQSTISIALGFAGFLFLGLSTLLS 215
           +       +R T   D C+  ++FC    +S+ L F  F+FL  S+  +
Sbjct: 132 VTNLNKTGIRHTPLPDFCKTLSSFCNHVALSLLLVFLSFIFLASSSFFT 180

[Close]

BLAST of CmoCh04G002180 vs. TAIR 10
Match: AT3G16300.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 43.1 bits (100), Expect = 3.5e-04
Identity = 43/164 (26.22%), Postives = 73/164 (44.51%), Query Frame = 0


Query: 60  ILVFRLSTFCFSLAS-AVFMITNSRGSGSDSPRWYDFDAFRYASLSSPIIASTLYVFAAN 119
           + +F L   C ++++ AV ++  +R +   +   ++F      SLS     S +Y+   +
Sbjct: 46  VAMFVLRAMCMAVSTVAVTLMVTARETSMTTLYGFEFQLHAVWSLSD----SLIYLVVVS 105

Query: 120 AIVAVYSLFEMIASVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAIT-- 179
           +   +YSL ++I S   + R+  + P   Q WF F  DQ   Y ++S  SA  AL +T  
Sbjct: 106 SATVLYSLIQLIISGTRLMRKSPVIPTRTQAWFCFVADQIIGYAMVSGGSA--ALGVTNM 165

Query: 180 -------LRGTDTCRVTTAFCVQSTISIALGFAGFLFLGLSTLL 214
                  +   + C+    FC     SI      FL L  S+LL
Sbjct: 166 NRTGIRHMPLPNFCKSLGFFCDHLAGSIVFALFAFLLLAASSLL 203

[Close]

BLAST of CmoCh04G002180 vs. TAIR 10
Match: AT2G36330.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 42.7 bits (99), Expect = 4.5e-04
Identity = 42/161 (26.09%), Postives = 70/161 (43.48%), Query Frame = 0


Query: 62  VFRLSTFCFSLASAVFMITNSRGSGSDSPRWYDFDAF-RYASLSSPIIASTLYVFAANAI 121
           V + S   F L+  V  + +     +D  + +  D+F RY            +  + N +
Sbjct: 131 VVKFSALGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYR--------FCLSVNVV 190

Query: 122 VAVYSLFEMIASVWEISREVTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALA---ITL 181
             VYS F+     + + +E  L    L+  F+F  DQ  AYLL+SA +A        ++ 
Sbjct: 191 AFVYSSFQACDLAYHLVKEKHLISHHLRPLFEFIIDQVLAYLLMSASTAAVTRVDDWVSN 250

Query: 182 RGTDTCRVTTAFCVQSTISIALGFAGFLFLGLSTLLSGFRV 219
            G D       F   ++ SIA+ F  FL    S+L+SG+ +
Sbjct: 251 WGKD------EFTEMASASIAMSFLAFLAFAFSSLISGYNL 277

The following BLAST results are available for this feature:

BLAST of CmoCh04G002180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9SR15	1.2e-73	73.15	CASP-like protein 4C1 OS=Ricinus communis OX=3988 GN=RCOM_0464280 PE=2 SV=1	[more]
B9HTK2	7.4e-68	69.01	CASP-like protein 4C2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_822486 PE=3 S...	[more]
B9HMF8	2.4e-66	66.67	CASP-like protein 4C1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_820327 PE=3 S...	[more]
Q9M2U0	4.2e-63	62.44	CASP-like protein 4C1 OS=Arabidopsis thaliana OX=3702 GN=At3g55390 PE=2 SV=1	[more]
A9T836	2.7e-30	44.02	CASP-like protein 4C3 OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_192523 PE=2 ...	[more]

BLAST of CmoCh04G002180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUB8	9.6e-103	93.93	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111447351 PE=3 SV=1	[more]
A0A6J1JHP8	4.8e-102	93.46	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485192 PE=3 SV=1	[more]
A0A0A0KNW2	9.6e-95	87.67	CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G182050 PE=3 SV=1	[more]
A0A6J1JST8	2.8e-94	88.73	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111488036 PE=3 SV=1	[more]
A0A5D3BVM1	1.8e-93	86.04	CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00...	[more]

BLAST of CmoCh04G002180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942248.1	2.0e-102	93.93	CASP-like protein 4C1 [Cucurbita moschata] >XP_023547993.1 CASP-like protein 4C1...	[more]
XP_022987730.1	9.8e-102	93.46	CASP-like protein 4C1 [Cucurbita maxima]	[more]
KAG6600052.1	3.9e-98	93.87	CASP-like protein 4C2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004147690.1	2.0e-94	87.67	CASP-like protein 4C1 [Cucumis sativus] >KGN50549.1 hypothetical protein Csa_021...	[more]
XP_038893216.1	4.4e-94	87.27	CASP-like protein 4C1 [Benincasa hispida]	[more]

BLAST of CmoCh04G002180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55390.1	3.0e-64	62.44	Uncharacterised protein family (UPF0497)	[more]
AT1G79780.1	1.3e-06	32.11	Uncharacterised protein family (UPF0497)	[more]
AT3G16300.1	3.5e-04	26.22	Uncharacterised protein family (UPF0497)	[more]
AT2G36330.1	4.5e-04	26.09	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 57..206 e-value: 4.0E-24 score: 85.1
None	No IPR available	PANTHER	PTHR11615:SF236	CASP-LIKE PROTEIN 4C1	coord: 17..230
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 17..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G002180.1	CmoCh04G002180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding