CmoCh04G002030 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G002030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LOB domain-containing protein 33-like
Location	Cmo_Chr04: 1007304 .. 1008013 (-)
RNA-Seq Expression	CmoCh04G002030
Synteny	CmoCh04G002030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGGCTTACCTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACATCCGTAGCCACGCTGCCATCACTGTTGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCGCGTTGCAACAAGAGGTTGTTCTAAAACTTTAAAACTTAAGTAGATGATTAACGCTTTCTTAGCTTGTCAAATCTTTCTCTTGCAGATCATGAGTTTACAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCGCTGATATGGACAACGTTGCAGTCGTCGAGAACCCATGTATAGAGCTTCAAGTCTCGAAACAGTTGAATGATTTGGTGATGAACACAAATGATTATCAAAATGAGTTGCTCTCTCAACTGCCGAATTTTGATCAAGTCGAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATCGGGGAAGAAGACGGGTTTTTCGGGTGCAACCCAAATAACGCTATGGAGAATTCAGCCTTTGATGTAGCAGTTGATGAAACCTTTGGTTATCTATGGTAG

mRNA sequence

ATGACAGGGCTTACCTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACATCCGTAGCCACGCTGCCATCACTGTTGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCGCGTTGCAACAAGAGATCATGAGTTTACAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCGCTGATATGGACAACGTTGCAGTCGTCGAGAACCCATGTATAGAGCTTCAAGTCTCGAAACAGTTGAATGATTTGGTGATGAACACAAATGATTATCAAAATGAGTTGCTCTCTCAACTGCCGAATTTTGATCAAGTCGAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATCGGGGAAGAAGACGGGTTTTTCGGGTGCAACCCAAATAACGCTATGGAGAATTCAGCCTTTGATGTAGCAGTTGATGAAACCTTTGGTTATCTATGGTAG

Coding sequence (CDS)

ATGACAGGGCTTACCTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACATCCGTAGCCACGCTGCCATCACTGTTGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCGCGTTGCAACAAGAGATCATGAGTTTACAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCGCTGATATGGACAACGTTGCAGTCGTCGAGAACCCATGTATAGAGCTTCAAGTCTCGAAACAGTTGAATGATTTGGTGATGAACACAAATGATTATCAAAATGAGTTGCTCTCTCAACTGCCGAATTTTGATCAAGTCGAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATCGGGGAAGAAGACGGGTTTTTCGGGTGCAACCCAAATAACGCTATGGAGAATTCAGCCTTTGATGTAGCAGTTGATGAAACCTTTGGTTATCTATGGTAG

Protein sequence

MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLFCIGEEDGFFGCNPNNAMENSAFDVAVDETFGYLW

Homology

[Close]

BLAST of CmoCh04G002030 vs. ExPASy Swiss-Prot
Match: Q9LHS8 (LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.2e-42
Identity = 90/155 (58.06%), Postives = 117/155 (75.48%), Query Frame = 0


Query: 10  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIR 69
           +S  SSCGACKFLRRKC+  CVF+P+F+Y++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 70  SHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVAVV 129
           + AAIT++YEAL RMRDP YGCVAHIFAL Q++++LQEEI+ LGSQ+ NF+    N + +
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 130 ENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFD 165
            N      + + +N + M T ++ +E  S L N D
Sbjct: 122 NN------IPEFVNQMTMATTNFVDE--SVLNNAD 148

[Close]

BLAST of CmoCh04G002030 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.6e-35
Identity = 75/125 (60.00%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 8   SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMH 67
           SSSSS S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP+ 
Sbjct: 4   SSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPIS 63

Query: 68  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVA 127
            R  AAIT++YEA  R++DP YGCV+HIFALQQ++++LQ E+++L  Q A      D+  
Sbjct: 64  DRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS-P 123

Query: 128 VVENP 133
             ENP
Sbjct: 124 TSENP 127

[Close]

BLAST of CmoCh04G002030 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 5.4e-33
Identity = 66/111 (59.46%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 8   SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMH 67
           S       CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLLLH+P+H
Sbjct: 30  SGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVH 89

Query: 68  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIAN 119
            RS A +T+ YEA  R+RDP YGCVAHIFALQQ++++LQ E+  L + +A+
Sbjct: 90  RRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]

BLAST of CmoCh04G002030 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.4e-33
Identity = 66/104 (63.46%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 14  SSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIRSHAA 73
           S CGACKFLRRKC   CVFAP+F +++  +HFAA+HKVFGASNVSKLL HLP+  R  AA
Sbjct: 6   SPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAA 65

Query: 74  ITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 118
           +T++YEA  R+RDP YGCVAHIFALQQ++M+LQ ++  L +  A
Sbjct: 66  VTISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAA 109

[Close]

BLAST of CmoCh04G002030 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-32
Identity = 79/171 (46.20%), Postives = 109/171 (63.74%), Query Frame = 0


Query: 10  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIR 69
           + S S CGACKFLRR+C   CVFAP+F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 70  SHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVAVV 129
             AA T+ YEA  R +DP YGCV+HIF+LQQ++++LQ ++++L  Q       +D+ + +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPS-I 121

Query: 130 ENPCI-------ELQVSKQLNDLVMNTNDYQNELLSQLPN-----FDQVEI 169
           ENP          LQ S  L+   + T++ Q E  S L N     + Q+EI
Sbjct: 122 ENPNYYQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDLKNIMTSCYHQMEI 171

[Close]

BLAST of CmoCh04G002030 vs. ExPASy TrEMBL
Match: A0A6J1FLU4 (LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111446983 PE=3 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 3.1e-116
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL
Sbjct: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT 120
           LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT
Sbjct: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT 120

Query: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLFCI 180
           ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLFCI
Sbjct: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLFCI 180

Query: 181 GEEDGFFGCNPNNAMENSAFDVAVDETFGYLW 213
           GEEDGFFGCNPNNAMENSAFDVAVDETFGYLW
Sbjct: 181 GEEDGFFGCNPNNAMENSAFDVAVDETFGYLW 212

[Close]

BLAST of CmoCh04G002030 vs. ExPASy TrEMBL
Match: A0A6J1K6X9 (LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC111491723 PE=3 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 7.7e-107
Identity = 197/214 (92.06%), Postives = 205/214 (95.79%), Query Frame = 0


Query: 1   MTGLT--SYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGLT  S SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIAN 120
           KLLLHLPMH+RSHAAITV+YEALERMRDPTYGCVAHIF LQQEIMSLQEEIDMLGSQIAN
Sbjct: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120

Query: 121 FTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLF 180
           FT DMDNVAVVENP +ELQVSKQLN+LVMNTNDYQNELLSQLP FD+V+INDAQMISPLF
Sbjct: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLF 180

Query: 181 CIGEEDGFFGCNPNNAMENSAFDVAVDETFGYLW 213
           CIGEE+GFFGCNPNNAMENSAFDV+VDE F YLW
Sbjct: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 214

[Close]

BLAST of CmoCh04G002030 vs. ExPASy TrEMBL
Match: A0A6J1CDB4 (LOB domain-containing protein 33 OS=Momordica charantia OX=3673 GN=LOC111010160 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.5e-78
Identity = 158/201 (78.61%), Postives = 173/201 (86.07%), Query Frame = 0


Query: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           MTG     SSSS SSCGACKFLRRKCS+ CVFAPFF+Y+EATSHFAAVHKVFGASNVSKL
Sbjct: 1   MTGFA--YSSSSFSSCGACKFLRRKCSDQCVFAPFFSYEEATSHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT 120
           LLHLP+H RSHAAITVAYEALERMRDPTYGC+AHIFALQQE+ SLQEEI++LGSQIANFT
Sbjct: 61  LLHLPVHNRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVASLQEEIEILGSQIANFT 120

Query: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPN--FDQVEINDAQMISPLF 180
              D VA  ENP IELQVS+QL+D VMNT+DYQN L SQLP+  FD    NDAQMISPL 
Sbjct: 121 TATDTVATTENPFIELQVSQQLSDFVMNTDDYQNHLFSQLPHQTFDHRGQNDAQMISPLC 180

Query: 181 CIGEEDGFFGCNPNNAMENSA 200
           C+GEE+G+FGCNP NAMEN A
Sbjct: 181 CLGEENGYFGCNP-NAMENFA 198

[Close]

BLAST of CmoCh04G002030 vs. ExPASy TrEMBL
Match: A0A0A0KNX8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.7e-74
Identity = 154/217 (70.97%), Postives = 183/217 (84.33%), Query Frame = 0


Query: 4   LTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLH 63
           +T  +SS+SS+SCGACKFLRRKCS+ CVFAPFF+YDEATSHFAAVHKVFGASNVSKLLLH
Sbjct: 1   MTGLNSSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 60

Query: 64  LPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADM 123
           LP HIRSHAAITVAYEALERMRDPTYGCVAHIFALQQE+ SLQEEI++LGSQIANF    
Sbjct: 61  LPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATTG 120

Query: 124 DNVAVVENPCI-ELQVSKQLNDL-VMNTNDYQNELLSQLP--NFDQVEIND--AQMISPL 183
            ++A V+NP I ++QV +Q++   +MNTN YQNEL+S+LP  +FD V+ ++  AQMISPL
Sbjct: 121 GSIAAVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQMISPL 180

Query: 184 FCIGEEDGFFG-CNPNNAMENSAFDVAVDET-FGYLW 213
           FC+GEEDG F   N NN +E+SAFDV+V+E   GY W
Sbjct: 181 FCLGEEDGVFEFSNSNNVVESSAFDVSVEENCIGYPW 217

[Close]

BLAST of CmoCh04G002030 vs. ExPASy TrEMBL
Match: A0A1S3CGM1 (LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.5e-73
Identity = 154/218 (70.64%), Postives = 181/218 (83.03%), Query Frame = 0


Query: 4   LTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLH 63
           +T  +SS++SSSCGACKFLRRKCS+ CVFAPFF+YDEATSHFAAVHKVFGASNVSKLLLH
Sbjct: 1   MTGLNSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 60

Query: 64  LPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADM 123
           LP H RSHAAITVAYEALERMRDPTYGC+AHIFALQQE++SLQEEI++LGSQIAN     
Sbjct: 61  LPTHTRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIANLATTG 120

Query: 124 DNVAVVENPCIE--LQVSKQLNDLVM-NTNDYQNELLSQLP--NFDQVE-INDAQMISPL 183
            ++A VENP I+  +QVS+Q++   M NTN YQNEL S+LP  +FD ++  N AQMISPL
Sbjct: 121 GSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQMISPL 180

Query: 184 FCIGEEDGFFG-CNPNNAMEN-SAFDVAVDET-FGYLW 213
           FC+GEEDG F  CN NN +E+ SAFDV+V+E   GY W
Sbjct: 181 FCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPW 218

[Close]

BLAST of CmoCh04G002030 vs. NCBI nr
Match: XP_022941701.1 (LOB domain-containing protein 33-like [Cucurbita moschata])

HSP 1 Score: 427.6 bits (1098), Expect = 6.5e-116
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL
Sbjct: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT 120
           LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT
Sbjct: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT 120

Query: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLFCI 180
           ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLFCI
Sbjct: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLFCI 180

Query: 181 GEEDGFFGCNPNNAMENSAFDVAVDETFGYLW 213
           GEEDGFFGCNPNNAMENSAFDVAVDETFGYLW
Sbjct: 181 GEEDGFFGCNPNNAMENSAFDVAVDETFGYLW 212

[Close]

BLAST of CmoCh04G002030 vs. NCBI nr
Match: XP_023542245.1 (LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 410.2 bits (1053), Expect = 1.1e-110
Identity = 203/212 (95.75%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           MTGLTS SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL
Sbjct: 1   MTGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT 120
           LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEI+SLQEEIDMLGSQIANFT
Sbjct: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFT 120

Query: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLFCI 180
           ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLP FD+VE NDAQMISPLFCI
Sbjct: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPTFDEVETNDAQMISPLFCI 180

Query: 181 GEEDGFFGCNPNNAMENSAFDVAVDETFGYLW 213
           GEE+GFFGCNPNNAMENSAFDV+VDE F YLW
Sbjct: 181 GEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 212

[Close]

BLAST of CmoCh04G002030 vs. NCBI nr
Match: KAG7030707.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 407.1 bits (1045), Expect = 9.0e-110
Identity = 204/215 (94.88%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 1   MTGLT---SYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNV 60
           MTGLT   S SSSSSSSSCGACKFLRRKCSNHCVFAPFFTY+EATSHFAAVHKVFGASNV
Sbjct: 2   MTGLTSSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYEEATSHFAAVHKVFGASNV 61

Query: 61  SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 120
           SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA
Sbjct: 62  SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 121

Query: 121 NFTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPL 180
           NFTADMDNV VVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPN D+VEINDAQMISPL
Sbjct: 122 NFTADMDNVTVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNLDRVEINDAQMISPL 181

Query: 181 FCIGEEDGFFGCNPNNAMENSAFDVAVDETFGYLW 213
           FCIGEEDGFFGCNPNNAMENSAFDVA+DE F YLW
Sbjct: 182 FCIGEEDGFFGCNPNNAMENSAFDVAIDENFAYLW 216

[Close]

BLAST of CmoCh04G002030 vs. NCBI nr
Match: KAG6600038.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 402.9 bits (1034), Expect = 1.7e-108
Identity = 203/214 (94.86%), Postives = 206/214 (96.26%), Query Frame = 0


Query: 1   MTGLT---SYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNV 60
           MTGLT   S SSSSSSSSCGACKFLRRKCSNHCVFAPFFTY+EATSHFAAVHKVFGASNV
Sbjct: 1   MTGLTSSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYEEATSHFAAVHKVFGASNV 60

Query: 61  SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 120
           SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA
Sbjct: 61  SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 120

Query: 121 NFTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPL 180
           NFTADMDNV VVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPN D+VEINDAQMISPL
Sbjct: 121 NFTADMDNVTVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNLDRVEINDAQMISPL 180

Query: 181 FCIGEEDGFFGCNPNNAMENSAFDVAVDETFGYL 212
           FCIGEEDGFFGCNPNNAMENSAFDVA+DE F YL
Sbjct: 181 FCIGEEDGFFGCNPNNAMENSAFDVAIDENFAYL 214

[Close]

BLAST of CmoCh04G002030 vs. NCBI nr
Match: XP_022996495.1 (LOB domain-containing protein 33-like [Cucurbita maxima])

HSP 1 Score: 396.4 bits (1017), Expect = 1.6e-106
Identity = 197/214 (92.06%), Postives = 205/214 (95.79%), Query Frame = 0


Query: 1   MTGLT--SYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGLT  S SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIAN 120
           KLLLHLPMH+RSHAAITV+YEALERMRDPTYGCVAHIF LQQEIMSLQEEIDMLGSQIAN
Sbjct: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120

Query: 121 FTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLF 180
           FT DMDNVAVVENP +ELQVSKQLN+LVMNTNDYQNELLSQLP FD+V+INDAQMISPLF
Sbjct: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLF 180

Query: 181 CIGEEDGFFGCNPNNAMENSAFDVAVDETFGYLW 213
           CIGEE+GFFGCNPNNAMENSAFDV+VDE F YLW
Sbjct: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 214

[Close]

BLAST of CmoCh04G002030 vs. TAIR 10
Match: AT5G06080.1 (LOB domain-containing protein 33 )

HSP 1 Score: 173.7 bits (439), Expect = 1.6e-43
Identity = 90/155 (58.06%), Postives = 117/155 (75.48%), Query Frame = 0


Query: 10  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIR 69
           +S  SSCGACKFLRRKC+  CVF+P+F+Y++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 70  SHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVAVV 129
           + AAIT++YEAL RMRDP YGCVAHIFAL Q++++LQEEI+ LGSQ+ NF+    N + +
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 130 ENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFD 165
            N      + + +N + M T ++ +E  S L N D
Sbjct: 122 NN------IPEFVNQMTMATTNFVDE--SVLNNAD 148

[Close]

BLAST of CmoCh04G002030 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-36
Identity = 75/125 (60.00%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 8   SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMH 67
           SSSSS S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP+ 
Sbjct: 4   SSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPIS 63

Query: 68  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVA 127
            R  AAIT++YEA  R++DP YGCV+HIFALQQ++++LQ E+++L  Q A      D+  
Sbjct: 64  DRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS-P 123

Query: 128 VVENP 133
             ENP
Sbjct: 124 TSENP 127

[Close]

BLAST of CmoCh04G002030 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 142.5 bits (358), Expect = 3.9e-34
Identity = 66/111 (59.46%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 8   SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMH 67
           S       CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLLLH+P+H
Sbjct: 30  SGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVH 89

Query: 68  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIAN 119
            RS A +T+ YEA  R+RDP YGCVAHIFALQQ++++LQ E+  L + +A+
Sbjct: 90  RRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]

BLAST of CmoCh04G002030 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-33
Identity = 79/171 (46.20%), Postives = 109/171 (63.74%), Query Frame = 0


Query: 10  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIR 69
           + S S CGACKFLRR+C   CVFAP+F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 70  SHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVAVV 129
             AA T+ YEA  R +DP YGCV+HIF+LQQ++++LQ ++++L  Q       +D+ + +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPS-I 121

Query: 130 ENPCI-------ELQVSKQLNDLVMNTNDYQNELLSQLPN-----FDQVEI 169
           ENP          LQ S  L+   + T++ Q E  S L N     + Q+EI
Sbjct: 122 ENPNYYQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDLKNIMTSCYHQMEI 171

[Close]

BLAST of CmoCh04G002030 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 138.7 bits (348), Expect = 5.6e-33
Identity = 62/110 (56.36%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 8   SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMH 67
           +++ + S CGACKFLRRKC++ C+FAP+F+ ++  + FAA+HKVFGASNVSKLLL++P+H
Sbjct: 8   TTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIH 67

Query: 68  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 118
            R  A +T+AYEA  R+ DP YGCV+HIFALQQ++  LQ ++  + +QIA
Sbjct: 68  DRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

The following BLAST results are available for this feature:

BLAST of CmoCh04G002030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHS8	2.2e-42	58.06	LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 S...	[more]
Q9M2J7	2.6e-35	60.00	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
O22131	5.4e-33	59.46	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q5UG13	5.4e-33	63.46	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q9SLB6	2.7e-32	46.20	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]

BLAST of CmoCh04G002030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLU4	3.1e-116	100.00	LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111446...	[more]
A0A6J1K6X9	7.7e-107	92.06	LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC11149172...	[more]
A0A6J1CDB4	1.5e-78	78.61	LOB domain-containing protein 33 OS=Momordica charantia OX=3673 GN=LOC111010160 ...	[more]
A0A0A0KNX8	1.7e-74	70.97	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV...	[more]
A0A1S3CGM1	1.5e-73	70.64	LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE...	[more]

BLAST of CmoCh04G002030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941701.1	6.5e-116	100.00	LOB domain-containing protein 33-like [Cucurbita moschata]	[more]
XP_023542245.1	1.1e-110	95.75	LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo]	[more]
KAG7030707.1	9.0e-110	94.88	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6600038.1	1.7e-108	94.86	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022996495.1	1.6e-106	92.06	LOB domain-containing protein 33-like [Cucurbita maxima]	[more]

BLAST of CmoCh04G002030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06080.1	1.6e-43	58.06	LOB domain-containing protein 33	[more]
AT3G58190.1	1.9e-36	60.00	lateral organ boundaries-domain 29	[more]
AT2G45420.1	3.9e-34	59.46	LOB domain-containing protein 18	[more]
AT2G42440.1	1.9e-33	46.20	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G42430.1	5.6e-33	56.36	lateral organ boundaries-domain 16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 95..122
None	No IPR available	PANTHER	PTHR31529:SF50	LOB DOMAIN-CONTAINING PROTEIN 33	coord: 12..160
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 12..160
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 15..112 e-value: 7.1E-33 score: 113.1
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 14..116 score: 21.940924

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G002030.1	CmoCh04G002030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus