CmoCh04G002010 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G002010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Vesicle transport V-snare
Location	Cmo_Chr04: 999998 .. 1002652 (+)
RNA-Seq Expression	CmoCh04G002010
Synteny	CmoCh04G002010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGAAGGCATATTGACGTTGTCGGCAATTACTTTAGGTGTCTAACACTTCACAAACAAACTTCTCATCCGTTTCCGCTTTCCGAATAGGCTCGGCCTCTGTAACTTCCGATTTCCGATCTGCCGAGTTTTGCTGGAAAATTTTGAGCGAAGGAGTCGCCAGAAGGTCAACGTGAACTTTTCTCAGTCTTTCGTGAGAGTTTAGTCAAGATGAGTGAGGTTTTCGATGGGTACGAGCGCCAGTATTGTGAACTCTCCGCGAATGTTTCTCGGAAATACAACTCTTTCTCCGCCTCCGATTCAGGTACTTTCGGAGTGTTTTCTTTGTTCAATTTGACTTATGTGAGGGTTAACCTAGGCTTTTACCGCTACGATTTTCTATGTTTCGTTCCTAATTTGAAGGAAGAGATTTGTTTCTGTTGTTAGAGTTTGGAAGAGAATTCTTGAAATTGTGGTTGGAGATCTCGAGTTGAATGAGCAGATTCTGAAGTTTCGAAATCTTTGGAGATGAATGAAGGGATGTGAACATGGGATGAGGAATTTGTAGCTGATGGGATCGAATTACGCATATGGGGAATTTTAGCGTTCCTTACTAATTCGTTAGATTTTGGTTGTAAAATGACTTGCATATGCTGAATTGGATTTCTTTTTGGAAATGAACTGAATGGGATCGAATTACGCATATGGGGAATTTTAACGTTTGAATGAATGTTAAAGAGACTCTTCTTTTTTGAGGTGAGCGATTGGAAGGGTTGCTAATTTTAGCTTAACATGAATTGCAGAGCAGAAACAGCAATGGCTTTCGGAAATCAAAGTTAGTTTAGATGAGGCCGATGTTTTGGTACGTTTGAAGAGCCTTCTTTTGGTTCTTTTCTTCTGTTTTTTAGGTTGGTTAGATTCTTAATTATATGAATTCAATGTTGCATCTTTTACGATTTCTAGATCCGGAAAATGGACCTTGAGGCCAGAAGTTTGCAGCCAGGGGTAAAGGCTATGCTACTTGCTAAGCTTCGGGAGTACAAAGCTGATCTTGGGAAACTGAAAAAGGAACTCAAGAGGTTTACATCACCAAACGCTAATCAAGCTGCCCGTGAAGAGCTGTTGGAGTCTGGAATGGCGGATACACATCTGGTAGATCTTGATAATTCAATTTTTACAGTTACCTTCAAATTTAAGCATCACTACTACCTCTTCAGTAATACTCCAGTCATGAGTTGGGTTCTTAGTCTGAAATCCAATTGTGGGAACATACTAATTCAATTGAAATAACATCAATTTTTATTACTTACAAAGAACTTGGAGGAAATGATTTCTATCATGTTAGCTATGTGCCTAGAATTTAGTAACATATAAGTTTTCTTTACAACCTAATCTAATATATTTAGATTAGTCGAGATGCTTGTAAGTTGGCCCAATCACAAACAGATATTATAAAAAAAATCTTAATGTATCTATAGTTCTATACAAAATGTCCAAAGTTTTTATTCAGTCCATGTTTGTTTTTTCAGCCTCTCTTGTCGCTGAAGGGATGATATTTTCTAAGTCATGTTGATAGTCCTATCTTTTCCCCTTCAGTTTCTTTTGCAATGGTTGTTGGCTTTTACGTCTCGATAACTTAAACATGTTTGTGGAGTTGAGTTGCTGGACGCACCTTCTACAGCCAGTTCGATTCACATCATAGGATCAGTCTCATATCTTTTATATAGCCATAGGCCAAACGGATCTCATCATTGGAACATCTGCTCTAATTTTGATAATTAGAAGATATTTGTCTTGCAGAGGTTTAATTGATCGTTTTTGTTACCTTTTCCGCGTTCTTACAGGCATCAGCTGATCAAAGGGAGAGGCTGACAATGTCCATAGAGAGAATAAATCAGTCTGGTGAAAGAATCACAGAGAGTAGAAGAACCATGCTGGAGACCGAGGAGCTCGGTGTCTCAATTCTCCAGGATTTACATCAACAACGTGAAACTCTCCTTCACTCCCATAAGAGAGTAAGTTTTTTCTTGATATTATGTTCTGGCTGACTAGTAAGTAAGTTCTTAGCCACTCACTAATTACTCTGAATAAATCCCATCTTTGATGCCATTAAAATCCTTCAACTTCAACTCACTAATTTTAATTGCCAGCTCTTTTTCCATCTTTGATGCCATTAAAATGCTTCATGTTGCAGCTTTATGGGGTAGATGATGCCATTGATAAGAGTAAAAAGGTTCTGGTCACGATGTCTCGAAGAATCAGTCGAAATAAATGGATTGTTGGGTCAGTAATCGGAGTTCTGGTACTCGTTATTATCCTTATAATATATCTTAAGCTTTAAGATCAGGAAGAGATCTCTCCTTGATCATGAAAGGAGTTGCACTCTTATCATTTGATTTTTCCAATTGTACGATTGGTTGTCGATCATATGTTTGATGTATTTTATTACCGATACCTCGTGTTCATGTCTGTAATCGGACCAAATCTTGTAACTCAATAGCATGTTAACTAATCAATACCAGATAGTAGGCAGCTCTTGATTGTGTATATAATGGTTAATTACTTTCTGTACATGCACTTTAGGAAGTCAGGAGCCATCGTCCATTGATGATTCCATTTTTTCAATTTTTTTGTACTGGAACTTACTATGATATAGTAATTGCACTAGATAGCATAG

mRNA sequence

CGGGAAGGCATATTGACGTTGTCGGCAATTACTTTAGGTGTCTAACACTTCACAAACAAACTTCTCATCCGTTTCCGCTTTCCGAATAGGCTCGGCCTCTGTAACTTCCGATTTCCGATCTGCCGAGTTTTGCTGGAAAATTTTGAGCGAAGGAGTCGCCAGAAGGTCAACGTGAACTTTTCTCAGTCTTTCGTGAGAGTTTAGTCAAGATGAGTGAGGTTTTCGATGGGTACGAGCGCCAGTATTGTGAACTCTCCGCGAATGTTTCTCGGAAATACAACTCTTTCTCCGCCTCCGATTCAGAGCAGAAACAGCAATGGCTTTCGGAAATCAAAGTTAGTTTAGATGAGGCCGATGTTTTGATCCGGAAAATGGACCTTGAGGCCAGAAGTTTGCAGCCAGGGGTAAAGGCTATGCTACTTGCTAAGCTTCGGGAGTACAAAGCTGATCTTGGGAAACTGAAAAAGGAACTCAAGAGGTTTACATCACCAAACGCTAATCAAGCTGCCCGTGAAGAGCTGTTGGAGTCTGGAATGGCGGATACACATCTGGCATCAGCTGATCAAAGGGAGAGGCTGACAATGTCCATAGAGAGAATAAATCAGTCTGGTGAAAGAATCACAGAGAGTAGAAGAACCATGCTGGAGACCGAGGAGCTCGGTGTCTCAATTCTCCAGGATTTACATCAACAACGTGAAACTCTCCTTCACTCCCATAAGAGAATAGCATAG

Coding sequence (CDS)

ATGAGTGAGGTTTTCGATGGGTACGAGCGCCAGTATTGTGAACTCTCCGCGAATGTTTCTCGGAAATACAACTCTTTCTCCGCCTCCGATTCAGAGCAGAAACAGCAATGGCTTTCGGAAATCAAAGTTAGTTTAGATGAGGCCGATGTTTTGATCCGGAAAATGGACCTTGAGGCCAGAAGTTTGCAGCCAGGGGTAAAGGCTATGCTACTTGCTAAGCTTCGGGAGTACAAAGCTGATCTTGGGAAACTGAAAAAGGAACTCAAGAGGTTTACATCACCAAACGCTAATCAAGCTGCCCGTGAAGAGCTGTTGGAGTCTGGAATGGCGGATACACATCTGGCATCAGCTGATCAAAGGGAGAGGCTGACAATGTCCATAGAGAGAATAAATCAGTCTGGTGAAAGAATCACAGAGAGTAGAAGAACCATGCTGGAGACCGAGGAGCTCGGTGTCTCAATTCTCCAGGATTTACATCAACAACGTGAAACTCTCCTTCACTCCCATAAGAGAATAGCATAG

Protein sequence

MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEARSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQRERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRIA

Homology

[Close]

BLAST of CmoCh04G002010 vs. ExPASy Swiss-Prot
Match: Q9SEL5 (Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana OX=3702 GN=VTI12 PE=1 SV=3)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-54
Identity = 114/173 (65.90%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSA-SDSEQKQQWLSEIKVSLDEADVLIRKMDLEA 60
           MS+VF+GYERQYCELS N+SRK +S S  S+ E+K+  ++EIK  +DEADVLIRKMDLEA
Sbjct: 1   MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60

Query: 61  RSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQ 120
           RSLQP  KA+ L+KLREYK+DL +LKKE KR +S +A  ++REEL+ESGMAD H  SADQ
Sbjct: 61  RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120

Query: 121 RERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           R RL MS+ER++QS +RI ESRR MLETEE+G+SI+QDL QQR+TLLH+H ++
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKL 173

[Close]

BLAST of CmoCh04G002010 vs. ExPASy Swiss-Prot
Match: Q9SEL6 (Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana OX=3702 GN=VTI11 PE=1 SV=2)

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-51
Identity = 109/172 (63.37%), Postives = 139/172 (80.81%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MS+VFDGYERQYCELSA++S+K +S  + D EQK+Q LSEIK  L+ A+VLIRKMDLEAR
Sbjct: 1   MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           +L P +K+ LL KLRE+K+DL   K E+KR TS   N AAR+ELLE+GMADT  ASADQR
Sbjct: 61  TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
            RL MS ER+ ++ +R+ +SRRTM+ETEE+GVSILQDLH QR++LL +H+ +
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETL 172

[Close]

BLAST of CmoCh04G002010 vs. ExPASy Swiss-Prot
Match: Q9LVP9 (Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=VTI13 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.4e-49
Identity = 106/172 (61.63%), Postives = 135/172 (78.49%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MS+ F+ YERQYCE+SAN+S+K  S  A D EQK+Q LSEIK  ++EA+ L++KMDLEAR
Sbjct: 1   MSQGFERYERQYCEISANLSKKCTSAIALDGEQKKQNLSEIKSGVEEAEALVKKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           +L P VK+ LL KLREYK+DL   K E+KR TS N N  AR+ELLE+GMADT  ASADQR
Sbjct: 61  NLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
            RL MS + + ++ +RI +SRRT+LETEELGVSILQDLH QR++LL +H+ +
Sbjct: 121 SRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETL 172

[Close]

BLAST of CmoCh04G002010 vs. ExPASy Swiss-Prot
Match: Q96AJ9 (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens OX=9606 GN=VTI1A PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 7.1e-15
Identity = 50/172 (29.07%), Postives = 95/172 (55.23%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MS  F+GYE+ +  L+A ++ K         ++K+Q ++ ++  L+EA  L+ +MDLE R
Sbjct: 1   MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
            + P  + M   ++R YK ++GKL+ + KR     +  A  +E+    + D   +S +QR
Sbjct: 61  EIPPQSRGMYSNRMRSYKQEMGKLETDFKR-----SRIAYSDEVRNELLGDDGNSSENQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
             L  + ER+ +S  R+    +  +ETE++G  +L++L   RE +  + +R+
Sbjct: 121 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERL 167

[Close]

BLAST of CmoCh04G002010 vs. ExPASy Swiss-Prot
Match: Q9JI51 (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus OX=10116 GN=Vti1a PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.3e-15
Identity = 48/174 (27.59%), Postives = 98/174 (56.32%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MS  F+GYE+ +  L+A ++ K +       ++K+Q ++ ++  L+EA  L+ +MDLE R
Sbjct: 1   MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTH--LASAD 120
            + P  + M   ++R YK ++GKL+ + KR     +++   E L ++G +  +  +   +
Sbjct: 61  EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNELLGDAGNSSENQLIKLRE 120

Query: 121 QRERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           +R  L  + ER+ +S  R+    +  +ETE++G  +L++L   RE +  + +R+
Sbjct: 121 ERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERL 174

[Close]

BLAST of CmoCh04G002010 vs. ExPASy TrEMBL
Match: A0A6J1FWM6 (vesicle transport v-SNARE 12-like OS=Cucurbita moschata OX=3662 GN=LOC111448046 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.7e-84
Identity = 171/172 (99.42%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR
Sbjct: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR
Sbjct: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKR+
Sbjct: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRL 172

[Close]

BLAST of CmoCh04G002010 vs. ExPASy TrEMBL
Match: A0A6J1K4T5 (vesicle transport v-SNARE 12-like OS=Cucurbita maxima OX=3661 GN=LOC111491702 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.9e-83
Identity = 169/172 (98.26%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MSEVF+GYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR
Sbjct: 1   MSEVFEGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           SLQPGVKAMLLAKLREYKADLGKLKKE KRFTSPNANQAAREELLESGMADTHLASADQR
Sbjct: 61  SLQPGVKAMLLAKLREYKADLGKLKKEFKRFTSPNANQAAREELLESGMADTHLASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKR+
Sbjct: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRL 172

[Close]

BLAST of CmoCh04G002010 vs. ExPASy TrEMBL
Match: A0A5A7U9Z0 (Vesicle transport v-SNARE 12-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00630 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.1e-78
Identity = 160/173 (92.49%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MSEVF+GYERQYCELSANVSRK NSF+ASDSEQKQQWLSEIKVSLDEA+VLIRKMDLEAR
Sbjct: 1   MSEVFEGYERQYCELSANVSRKSNSFAASDSEQKQQWLSEIKVSLDEAEVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           SLQPGVKAMLLAKLREYK DLGKLKKE KR TSPNA+QAAREELLESGMAD HLASADQR
Sbjct: 61  SLQPGVKAMLLAKLREYKTDLGKLKKEFKRLTSPNADQAAREELLESGMADAHLASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRIA 174
           ER+TMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLL SHKR++
Sbjct: 121 ERMTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLQSHKRVS 173

[Close]

BLAST of CmoCh04G002010 vs. ExPASy TrEMBL
Match: A0A1S3CFT2 (vesicle transport v-SNARE 12-like OS=Cucumis melo OX=3656 GN=LOC103500237 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.0e-77
Identity = 160/172 (93.02%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MSEVF+GYERQYCELSANVSRK NSF+ASDSEQKQQWLSEIKVSLDEA+VLIRKMDLEAR
Sbjct: 1   MSEVFEGYERQYCELSANVSRKSNSFAASDSEQKQQWLSEIKVSLDEAEVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           SLQPGVKAMLLAKLREYK DLGKLKKE KR TSPNA+QAAREELLESGMAD HLASADQR
Sbjct: 61  SLQPGVKAMLLAKLREYKTDLGKLKKEFKRLTSPNADQAAREELLESGMADAHLASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           ER+TMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLL SHKR+
Sbjct: 121 ERMTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLQSHKRL 172

[Close]

BLAST of CmoCh04G002010 vs. ExPASy TrEMBL
Match: A0A0A0KLX2 (PH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182770 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.0e-76
Identity = 158/172 (91.86%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MS VF+GYERQYCELSANVSRK NSF+ASDSEQKQQWLSEIKVSLDEA+VLIRKMDLEAR
Sbjct: 1   MSTVFEGYERQYCELSANVSRKSNSFAASDSEQKQQWLSEIKVSLDEAEVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           SLQPGVKA LLAKLREYKADLGKLKKE KR T+PNA+QAAREELLESGMAD HLASADQR
Sbjct: 61  SLQPGVKATLLAKLREYKADLGKLKKEFKRLTTPNADQAAREELLESGMADAHLASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           ER+TMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLL SHKR+
Sbjct: 121 ERMTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLQSHKRL 172

[Close]

BLAST of CmoCh04G002010 vs. NCBI nr
Match: XP_022943263.1 (vesicle transport v-SNARE 12-like [Cucurbita moschata])

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-83
Identity = 171/172 (99.42%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR
Sbjct: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR
Sbjct: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKR+
Sbjct: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRL 172

[Close]

BLAST of CmoCh04G002010 vs. NCBI nr
Match: XP_023528822.1 (vesicle transport v-SNARE 12-like [Cucurbita pepo subsp. pepo] >KAG7030705.1 Vesicle transport v-SNARE 12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318.5 bits (815), Expect = 3.4e-83
Identity = 170/172 (98.84%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MSEVF+GYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR
Sbjct: 1   MSEVFEGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR
Sbjct: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKR+
Sbjct: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRL 172

[Close]

BLAST of CmoCh04G002010 vs. NCBI nr
Match: KAG6600036.1 (ARF guanine-nucleotide exchange factor GNOM, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 318.5 bits (815), Expect = 3.4e-83
Identity = 170/172 (98.84%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1    MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
            MSEVF+GYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR
Sbjct: 1572 MSEVFEGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 1631

Query: 61   SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
            SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR
Sbjct: 1632 SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 1691

Query: 121  ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
            ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKR+
Sbjct: 1692 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRL 1743

[Close]

BLAST of CmoCh04G002010 vs. NCBI nr
Match: XP_022996461.1 (vesicle transport v-SNARE 12-like [Cucurbita maxima])

HSP 1 Score: 317.0 bits (811), Expect = 1.0e-82
Identity = 169/172 (98.26%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MSEVF+GYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR
Sbjct: 1   MSEVFEGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           SLQPGVKAMLLAKLREYKADLGKLKKE KRFTSPNANQAAREELLESGMADTHLASADQR
Sbjct: 61  SLQPGVKAMLLAKLREYKADLGKLKKEFKRFTSPNANQAAREELLESGMADTHLASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKR+
Sbjct: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRL 172

[Close]

BLAST of CmoCh04G002010 vs. NCBI nr
Match: XP_038889496.1 (vesicle transport v-SNARE 12-like [Benincasa hispida])

HSP 1 Score: 303.5 bits (776), Expect = 1.1e-78
Identity = 163/172 (94.77%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MSEVF+GYERQYCELSANVSRK NSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR
Sbjct: 1   MSEVFEGYERQYCELSANVSRKSNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           SLQPGVKAMLLAKLREYKADLGKLKKE KR TSPNA+QAAREELLESGMAD HLASADQR
Sbjct: 61  SLQPGVKAMLLAKLREYKADLGKLKKEFKRLTSPNADQAAREELLESGMADAHLASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           ER+TMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLL SHKR+
Sbjct: 121 ERMTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLQSHKRL 172

[Close]

BLAST of CmoCh04G002010 vs. TAIR 10
Match: AT1G26670.1 (Vesicle transport v-SNARE family protein )

HSP 1 Score: 214.2 bits (544), Expect = 8.5e-56
Identity = 114/173 (65.90%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSA-SDSEQKQQWLSEIKVSLDEADVLIRKMDLEA 60
           MS+VF+GYERQYCELS N+SRK +S S  S+ E+K+  ++EIK  +DEADVLIRKMDLEA
Sbjct: 1   MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60

Query: 61  RSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQ 120
           RSLQP  KA+ L+KLREYK+DL +LKKE KR +S +A  ++REEL+ESGMAD H  SADQ
Sbjct: 61  RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120

Query: 121 RERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           R RL MS+ER++QS +RI ESRR MLETEE+G+SI+QDL QQR+TLLH+H ++
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKL 173

[Close]

BLAST of CmoCh04G002010 vs. TAIR 10
Match: AT5G39510.1 (Vesicle transport v-SNARE family protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-52
Identity = 109/172 (63.37%), Postives = 139/172 (80.81%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MS+VFDGYERQYCELSA++S+K +S  + D EQK+Q LSEIK  L+ A+VLIRKMDLEAR
Sbjct: 1   MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           +L P +K+ LL KLRE+K+DL   K E+KR TS   N AAR+ELLE+GMADT  ASADQR
Sbjct: 61  TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
            RL MS ER+ ++ +R+ +SRRTM+ETEE+GVSILQDLH QR++LL +H+ +
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETL 172

[Close]

BLAST of CmoCh04G002010 vs. TAIR 10
Match: AT3G29100.1 (vesicle transport V-snare 13 )

HSP 1 Score: 142.1 bits (357), Expect = 4.1e-34
Identity = 76/121 (62.81%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 52  IRKMDLEARSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMAD 111
           ++KMDLEAR+L P VK+ LL KLREYK+DL   K E+KR TS N N  AR+ELLE+GMAD
Sbjct: 26  VKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMAD 85

Query: 112 THLASADQRERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKR 171
           T  ASADQR RL MS + + ++ +RI +SRRT+LETEELGVSILQDLH QR++LL +H+ 
Sbjct: 86  TLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHET 145

Query: 172 I 173
           +
Sbjct: 146 L 146

[Close]

BLAST of CmoCh04G002010 vs. TAIR 10
Match: AT3G29100.2 (vesicle transport V-snare 13 )

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-33
Identity = 75/118 (63.56%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 55  MDLEARSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHL 114
           MDLEAR+L P VK+ LL KLREYK+DL   K E+KR TS N N  AR+ELLE+GMADT  
Sbjct: 1   MDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLT 60

Query: 115 ASADQRERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           ASADQR RL MS + + ++ +RI +SRRT+LETEELGVSILQDLH QR++LL +H+ +
Sbjct: 61  ASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETL 118

[Close]

BLAST of CmoCh04G002010 vs. TAIR 10
Match: AT5G39630.1 (Vesicle transport v-SNARE family protein )

HSP 1 Score: 121.7 bits (304), Expect = 5.8e-28
Identity = 78/169 (46.15%), Postives = 114/169 (67.46%), Query Frame = 0


Query: 1   MSEVFDGYERQYCELSANVSRKYN-SFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEA 60
           MS VF  Y++QY ELS N+S+K + +FS    E+K++ LSEI   L+ A+ LI KMD  A
Sbjct: 1   MSNVFHEYDQQYSELSINLSKKCSLAFSLKGGEKKEK-LSEITYDLENAEKLISKMDHAA 60

Query: 61  RSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQ 120
            +L P +K++LL KL+E K+ L +L+ E+KR TS N     REE+LE+  AD     ADQ
Sbjct: 61  SNLPPNIKSILLEKLKESKSSLKRLRNEIKRNTSENLKVTTREEVLEAEKADL----ADQ 120

Query: 121 RERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHS 169
           R RL  S E + ++ E I +S+R +LETE +G+SIL++L +Q+E+L +S
Sbjct: 121 RSRLMKSTEGLVRTREMIKDSQRKLLETENIGISILENLQRQKESLQNS 164

The following BLAST results are available for this feature:

BLAST of CmoCh04G002010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEL5	1.2e-54	65.90	Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana OX=3702 GN=VTI12 PE=1 SV=3	[more]
Q9SEL6	1.6e-51	63.37	Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana OX=3702 GN=VTI11 PE=1 SV=2	[more]
Q9LVP9	3.4e-49	61.63	Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=VTI13 PE=2 SV=1	[more]
Q96AJ9	7.1e-15	29.07	Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens O...	[more]
Q9JI51	9.3e-15	27.59	Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegi...	[more]

BLAST of CmoCh04G002010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FWM6	5.7e-84	99.42	vesicle transport v-SNARE 12-like OS=Cucurbita moschata OX=3662 GN=LOC111448046 ...	[more]
A0A6J1K4T5	4.9e-83	98.26	vesicle transport v-SNARE 12-like OS=Cucurbita maxima OX=3661 GN=LOC111491702 PE...	[more]
A0A5A7U9Z0	6.1e-78	92.49	Vesicle transport v-SNARE 12-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3CFT2	1.0e-77	93.02	vesicle transport v-SNARE 12-like OS=Cucumis melo OX=3656 GN=LOC103500237 PE=3 S...	[more]
A0A0A0KLX2	2.0e-76	91.86	PH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182770 PE=3 SV=...	[more]

BLAST of CmoCh04G002010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943263.1	1.2e-83	99.42	vesicle transport v-SNARE 12-like [Cucurbita moschata]	[more]
XP_023528822.1	3.4e-83	98.84	vesicle transport v-SNARE 12-like [Cucurbita pepo subsp. pepo] >KAG7030705.1 Ves...	[more]
KAG6600036.1	3.4e-83	98.84	ARF guanine-nucleotide exchange factor GNOM, partial [Cucurbita argyrosperma sub...	[more]
XP_022996461.1	1.0e-82	98.26	vesicle transport v-SNARE 12-like [Cucurbita maxima]	[more]
XP_038889496.1	1.1e-78	94.77	vesicle transport v-SNARE 12-like [Benincasa hispida]	[more]

BLAST of CmoCh04G002010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26670.1	8.5e-56	65.90	Vesicle transport v-SNARE family protein	[more]
AT5G39510.1	1.2e-52	63.37	Vesicle transport v-SNARE family protein	[more]
AT3G29100.1	4.1e-34	62.81	vesicle transport V-snare 13	[more]
AT3G29100.2	4.6e-33	63.56	vesicle transport V-snare 13	[more]
AT5G39630.1	5.8e-28	46.15	Vesicle transport v-SNARE family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	GENE3D	1.20.5.110		coord: 117..173 e-value: 4.1E-14 score: 54.5
None	No IPR available	PFAM	PF12352	V-SNARE_C	coord: 128..172 e-value: 1.2E-12 score: 47.9
None	No IPR available	PANTHER	PTHR21230	VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED	coord: 1..172
None	No IPR available	PANTHER	PTHR21230:SF66	VESICLE TRANSPORT V-SNARE 12	coord: 1..172
None	No IPR available	CDD	cd15862	SNARE_Vti1	coord: 128..169 e-value: 8.20671E-15 score: 63.3168
None	No IPR available	SUPERFAMILY	58038	SNARE fusion complex	coord: 130..172
IPR038407	Vesicle transport v-SNARE, N-terminal domain superfamily	GENE3D	1.20.58.400		coord: 1..99 e-value: 5.6E-28 score: 99.1
IPR007705	Vesicle transport v-SNARE, N-terminal	PFAM	PF05008	V-SNARE	coord: 12..90 e-value: 1.2E-21 score: 76.9
IPR010989	SNARE	SUPERFAMILY	47661	t-snare proteins	coord: 6..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G002010.1	CmoCh04G002010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1990019	protein storage vacuole organization
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0006906	vesicle fusion
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0012507	ER to Golgi transport vesicle membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031902	late endosome membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0031201	SNARE complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0005484	SNAP receptor activity
molecular_function	GO:0000149	SNARE binding