CmoCh03G014820 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G014820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr03: 10635916 .. 10636936 (-)
RNA-Seq Expression	CmoCh03G014820
Synteny	CmoCh03G014820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGTGAGAATGTGATTTGAAGTAGTGGCTGTTTTTTCTTTTGTTTGTGCGCTGAAAACAGAAAAGGCAGTCTCATTGCCCCCTCGCTTTTCTTTCATCCTTCGCTCCAAAGAGAAACAATCAATTCCGTAGATATCAGTCTTGGTTTCATTGGTGAGGGCAAAGGCAATTAAATAAAAATATAATTATAATTTTTAATTTTTAATTTACCTGAAATAAAAAAAATAATATTGAAAGTTGGTTAGCTTTTACATAAGTCAGTATTCTCTCGACCATATGGGAATTAGGAACAAAACCTTCCTCTTCCTCGACGCCTCCTCTTCCCTTCTTCCACTTCCAAATCTCCTATCCATTTCTCTCGTCAGAACCTCAAATCGCTCACCTTTCTCGCGACTGCATTTGAAGAAGCCGCAATTCCGAACTTCGAAGCCCTAATTCGTGCTCCCAACCTGCCATCTAGTAAGGGTCACTCAATGTTTGTGATTTGCATTTACGAATTATGTACACGGGATTTCTAATCCAGACTGCGTATAAGTGGATGATTCGTCTATCGGATTTGTGTTCTTTTTTCTAGTTTTTACTTCTTTGCTCTCTCTGTGGTTTTTCTCCTCTCTGTTTTATTTCACCTGTAAACGAAATCACTGGTCTTCAAATTTGTGAACGCGTTACTGCTTTTCCATTTTCATTCGCGCATGTATCCGCTTGCTGCTGGCATACAGGATAATAAAGTTTATGAAATCTAATTTGTGAGGATTTTTGTTTTATGGGTTTAAATTGCGAATAGAAACGTAAATTTCTTTCTAAAATAGCATATGTGATTTTATGTTACTTTGTTTCAAAGTATGTGAATTTACTAGTCTATTTTGCGGCTTGCCCTTAAAATCATATATCTAACAACTTCCTCTTTCCAAACATTGTTGACAAATTGAAGGCACCAATGGCAGGCGTCATTACGAAGTTCTTCATTGCATCACTGTTTATGTGGATAACTCCCATCATATTGTTGTATGGTTTTAA

mRNA sequence

ATGGAGGGTGAGAATGAACAAAACCTTCCTCTTCCTCGACGCCTCCTCTTCCCTTCTTCCACTTCCAAATCTCCTATCCATTTCTCTCGTCAGAACCTCAAATCGCTCACCTTTCTCGCGACTGCATTTGAAGAAGCCGCAATTCCGAACTTCGAAGCCCTAATTCGTGCTCCCAACCTGCCATCTAGCACCAATGGCAGGCGTCATTACGAAGTTCTTCATTGCATCACTGTTTATGTGGATAACTCCCATCATATTGTTGTATGGTTTTAA

Coding sequence (CDS)

ATGGAGGGTGAGAATGAACAAAACCTTCCTCTTCCTCGACGCCTCCTCTTCCCTTCTTCCACTTCCAAATCTCCTATCCATTTCTCTCGTCAGAACCTCAAATCGCTCACCTTTCTCGCGACTGCATTTGAAGAAGCCGCAATTCCGAACTTCGAAGCCCTAATTCGTGCTCCCAACCTGCCATCTAGCACCAATGGCAGGCGTCATTACGAAGTTCTTCATTGCATCACTGTTTATGTGGATAACTCCCATCATATTGTTGTATGGTTTTAA

Protein sequence

MEGENEQNLPLPRRLLFPSSTSKSPIHFSRQNLKSLTFLATAFEEAAIPNFEALIRAPNLPSSTNGRRHYEVLHCITVYVDNSHHIVVWF

Homology

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BLAST of CmoCh03G014820 vs. NCBI nr
Match: KAG6581507.1 (hypothetical protein SDJN03_21509, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 45 EAAIPNFEALIRAPNLPSSTNGRRHYEVLHCITVYVDNSHHIV 88
          EAAIPNFEALIRAPNLPSSTNGRRHYEVLHCITVYVDNSHHIV
Sbjct: 39 EAAIPNFEALIRAPNLPSSTNGRRHYEVLHCITVYVDNSHHIV 81

The following BLAST results are available for this feature:

BLAST of CmoCh03G014820 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G014820 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G014820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581507.1	1.6e-15	100.00	hypothetical protein SDJN03_21509, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh03G014820 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G014820.1	CmoCh03G014820.1	mRNA