CmoCh03G014670 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G014670
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr03: 10544138 .. 10545499 (-)
RNA-Seq ExpressionCmoCh03G014670
SyntenyCmoCh03G014670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCGATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAAGTAAAGATTATTTTATCCGCAAATTCCATCGAGTTTGCTCCTAATCAATCGTGCCGCCCAATTGTTTCTAATTGCACAATTCACTCAACACTAATCAATTTGCTTTATCCGCACCTGAATTGACTACTCAATTTGTTATTCCCATTCCATTTCTTTTGGATTTTCTTCTTTTTCTAATCTCCGTGGAGCAAGCGGATCACCTACTGCAACGAATACTGGCTTCAAAAGCACTTCTCCCACAGAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTTATTTTGTTTCCCTATTTTTGGTTTGGGGACGCGATGGGGGGTACATACTTTTTATTTTCTTTTTTGGATGGTTCTTTATAGATTACGAGCAGTTATTGATTTAACGTATGGGCCTTCATCGGTGTTGTTATGATTATTGCTCTTTTAATTCTGAAGAAACATAATTGATTGTGTTCTTCTTGTTGCTGCTAGTTGTTTCCTGTTGCGCTTGGACGTTTTTATGTAATATGTATTTGCCGAAGCAGTATATGGTCAATCATGGCAGCTTGTGATCAAGACTCGAGAGAATTTGAATTTGAGGGATCTAATTTTATAAGAAAATTTCATGAACATGCATCATAGAGCTATCTGGTTTGTAAGGATATAAATTTTGGGAACAGGTAGGATTATCAGCGTCAAGAAATTTATAAACTTAATCCGCATCCCTGCAATCCTTTGCGCGGAACTTTCTTTTATAGGTTGGCGAGTGCGGGAAGAATAATTTGGTGAACCTAAGTAAATTACCAGAATATAGTGATCATTTGGTGTTCTTGCGCCTTCTACTGTCATAGGGATGGCTTCAGAATTCTCAATCTATTTCGTATCATGAGACATTTGTTTTCTTTTGTATTGCACAGTTTCATCATTGGCAGATTTTTCTCTATTTTTGGTGTTTTATCCTTGTTCTTCATCAACATGAAATGATCCAAGTATATCATGAAACAATAACCATTATTGTATTTCTCTATATAAGCAGGTGGAAAATAATAATGCCTGA

mRNA sequence

ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCGATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAACAAGCGGATCACCTACTGCAACGAATACTGGCTTCAAAAGCACTTCTCCCACAGAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTGGAAAATAATAATGCCTGA

Coding sequence (CDS)

ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCGATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAACAAGCGGATCACCTACTGCAACGAATACTGGCTTCAAAAGCACTTCTCCCACAGAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTGGAAAATAATAATGCCTGA

Protein sequence

MEGGLKKRKGRRKTESNQPNTWAVEIGRPDHLLAEPEPTWSHVAGHNLLVRGHVLVPFDCIVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETPRVKAPIINSALLVVFFPEVENNNA
Homology
[Close]
BLAST of CmoCh03G014670 vs. NCBI nr
Match: KAG7034782.1 (hypothetical protein SDJN02_04514, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.9 bits (764), Expect = 2.4e-77
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPDHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC 60
           MEGGLKKRKGRRKTESNQPNTWAVEIGRP+HLLAEPEPTWSHVAGHNLLVRGHVLVPFDC
Sbjct: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC 60

Query: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP 120
           IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP
Sbjct: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP 120

Query: 121 RVKAPIINSALLVVFFPEVENNNA 145
           RVKAPIINSALLVVFFPEVENNNA
Sbjct: 121 RVKAPIINSALLVVFFPEVENNNA 144

[Close]
BLAST of CmoCh03G014670 vs. NCBI nr
Match: KAG6581494.1 (hypothetical protein SDJN03_21496, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.5 bits (615), Expect = 4.5e-60
Identity = 123/144 (85.42%), Postives = 125/144 (86.81%), Query Frame = 0 

Query: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPDHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC 60
           MEGGLKKRKGRRKTESNQPNTWAVEIGRP+HLLAEPEPTWSHVAGHNLLVRGHVLV FDC
Sbjct: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVSFDC 60

Query: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP 120
           IVNAIQLRRAGGGFRKWTSADSSSLVNVTASST                  +ETEREETP
Sbjct: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASST------------------KETEREETP 120

Query: 121 RVKAPIINSALLVVFFPEVENNNA 145
           RVKAPIINSALLVVFFPEVENNNA
Sbjct: 121 RVKAPIINSALLVVFFPEVENNNA 126

The following BLAST results are available for this feature:
BLAST of CmoCh03G014670 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G014670 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G014670 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034782.12.4e-7799.31hypothetical protein SDJN02_04514, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6581494.14.5e-6085.42hypothetical protein SDJN03_21496, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh03G014670 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G014670.1CmoCh03G014670.1mRNA