CmoCh03G014620 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G014620
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr03: 10527712 .. 10528657 (-)
RNA-Seq ExpressionCmoCh03G014620
SyntenyCmoCh03G014620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACATTTGTGTTCGGTTACTTTTGAACCTTATTTGTTTGTACAGATTTCATGTTTTAGATATCTTGAAGTGATAAGTATGACCTCTCTTAGTCTTTGTTAACTGCCTGTTATTGATTGTTGAATACTCTCGTTTGAAAGATATGAACAAAAGAAAATTCCAAAACCCAAGCTAGTTTTAGAGAATGGTTTCTTGGACCAACTTTGTATTCCTATTTTTCCATTTCAAGAATTGTTTCAAAAGATATTTGCCCGATCTGCAGTGAACTAAATCCCTATTATTTATACGAACTTACAAAATCTAGTTACCACATAGCTAAGGCAACTAATGGGATAATTAAGCTTAATTGCTCAAATCCCTGAGATAATATAGGAACGAACCCCCAGAAGAAAGGAAAAGGGACGTTTTTGCATTTTAGTGTAGTAGAAGATGGATCACTCAGCCAAGCAGATATTCACACATCAAAGGCTCTCAGCTCTGCCATTAGAATCAAAGGCTGCTGCAACAGATGGAATGCTCTGTTCATCTCTGAAGAAGTTGCCCGGATCCACCATGGTCTTCACCTCCACCATTCTGTCAAAGTTTCCCTTGAAATACTTTCTTCCCCAGTGGCTCGCCTCCTAATAGCTTGCGTACGCCCAAATCCACGTCTCTGTAGTTCAAATAAGCACTTCTAGGCGATTTTGAAACATAGGGTGTCATGTACTCGTAAAGCTCTCTGATCAGCCCCACGTATTTGTCTGCAGCCTCCTCGCCTTCTTCTTTCCATGTCACTGAGTACTGTATTTTGTATTTGTTCCCTGCTCTGTGTGGGAATGGGGTTTCCCTCTCTGCAATTTCACTCATTTTCCCACCGTATGGGTTGAAGGTCAGCGCTGGTCTTTTCAGTTCCATCATTTTCCTCAGCATTCCTTCCAGATCTGCCTTGGAGATTGGCTCTTGA

mRNA sequence

ATGATACATTTGTGTTCGGTTACTTTTGAACCTTATTTGTTTGTACAGATTTCATGTTTTAGATATCTTGAAGTGATAAGAACGAACCCCCAGAAGAAAGGAAAAGGGACGTTTTTGCATTTTAGTGTAGTAGAAGATGGATCACTCAGCCAAGCAGATATTCACACATCAAAGGCTCTCAGCTCTGCCATTAGAATCAAAGGCTGCTGCAACAGATGGAATGCTCTGTTCATCTCTGAAGAAGTTGCCCGGATCCACCATGGTCTTCACCTCCACCATTCTGTCAAAGTTTCCCTTGAAATACTTTCTTCCCCAGTGGCTCGCCTCCTAATAGCTTGCGTACGCCCAAATCCACCCTCCTCGCCTTCTTCTTTCCATGTCACTGAGTACTGTATTTTGTATTTGTTCCCTGCTCTGTGTGGGAATGGGGTTTCCCTCTCTGCAATTTCACTCATTTTCCCACCGTATGGGTTGAAGGTCAGCGCTGGTCTTTTCAGTTCCATCATTTTCCTCAGCATTCCTTCCAGATCTGCCTTGGAGATTGGCTCTTGA

Coding sequence (CDS)

ATGATACATTTGTGTTCGGTTACTTTTGAACCTTATTTGTTTGTACAGATTTCATGTTTTAGATATCTTGAAGTGATAAGAACGAACCCCCAGAAGAAAGGAAAAGGGACGTTTTTGCATTTTAGTGTAGTAGAAGATGGATCACTCAGCCAAGCAGATATTCACACATCAAAGGCTCTCAGCTCTGCCATTAGAATCAAAGGCTGCTGCAACAGATGGAATGCTCTGTTCATCTCTGAAGAAGTTGCCCGGATCCACCATGGTCTTCACCTCCACCATTCTGTCAAAGTTTCCCTTGAAATACTTTCTTCCCCAGTGGCTCGCCTCCTAATAGCTTGCGTACGCCCAAATCCACCCTCCTCGCCTTCTTCTTTCCATGTCACTGAGTACTGTATTTTGTATTTGTTCCCTGCTCTGTGTGGGAATGGGGTTTCCCTCTCTGCAATTTCACTCATTTTCCCACCGTATGGGTTGAAGGTCAGCGCTGGTCTTTTCAGTTCCATCATTTTCCTCAGCATTCCTTCCAGATCTGCCTTGGAGATTGGCTCTTGA

Protein sequence

MIHLCSVTFEPYLFVQISCFRYLEVIRTNPQKKGKGTFLHFSVVEDGSLSQADIHTSKALSSAIRIKGCCNRWNALFISEEVARIHHGLHLHHSVKVSLEILSSPVARLLIACVRPNPPSSPSSFHVTEYCILYLFPALCGNGVSLSAISLIFPPYGLKVSAGLFSSIIFLSIPSRSALEIGS
Homology
BLAST of CmoCh03G014620 vs. ExPASy TrEMBL
Match: V4T5R0 (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10003819mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.2e-11
Identity = 44/84 (52.38%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 72  RWNALFISEEVARIHHGLHLHHSVKVSLEILSSPVARLLIACVRPNPPSSPSSFHVTEYC 131
           R NALF+SEE+ RIHH  H+H  V++ LEIL +P A  L ACV      S        Y 
Sbjct: 8   RGNALFVSEEIFRIHHSFHMHQPVEIVLEILFAPNACFLNACVAQFVVCSNVKI---PYK 67

Query: 132 ILYLFPALCGNGVSLSAISLIFPP 156
            +Y  PALCGNG+S S ISLIFPP
Sbjct: 68  SVYRLPALCGNGISDSEISLIFPP 88

BLAST of CmoCh03G014620 vs. ExPASy TrEMBL
Match: A0A2H5QBV0 (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_214820 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 45/84 (53.57%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 72  RWNALFISEEVARIHHGLHLHHSVKVSLEILSSPVARLLIACVRPNPPSSPSSFHVTEYC 131
           R +AL ISEE+ RIHH  HLH  V++ LEIL SP A  L ACV      S        Y 
Sbjct: 8   RRDALLISEEIFRIHHSFHLHKPVEIVLEILLSPNACFLNACVAQFVVCSNVKI---PYK 67

Query: 132 ILYLFPALCGNGVSLSAISLIFPP 156
            +Y+ PALCGNG+S S ISLIFPP
Sbjct: 68  SVYMLPALCGNGISDSEISLIFPP 88

BLAST of CmoCh03G014620 vs. ExPASy TrEMBL
Match: A0A251PI87 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G097400 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.6e-05
Identity = 41/98 (41.84%), Postives = 51/98 (52.04%), Query Frame = 0

Query: 85  IHHGLHLHHSVKVSLEILSSPVARLLIACVRPNPPSSPSSFHVTEYCILYLFPALCGNGV 144
           I+  LHL   +KV +E+L S      IA V     ++        Y IL  FPA CG GV
Sbjct: 14  INSSLHLQQPIKVVIEVLQSINLPFFIAIVTKCIDTNVK----VPYWILNKFPARCGKGV 73

Query: 145 SLSAISLIFPPYGLKVSAGLFSSIIFLSIPSRSALEIG 183
           S + I LIFPPYGL  +  L S IIF    +  +LEIG
Sbjct: 74  SEARIWLIFPPYGLNTNPVLPSLIIFFHKHANPSLEIG 107

BLAST of CmoCh03G014620 vs. NCBI nr
Match: CBI34082.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 88.2 bits (217), Expect = 8.0e-14
Identity = 52/124 (41.94%), Postives = 69/124 (55.65%), Query Frame = 0

Query: 72  RWNALFISEEVARIHHGLHLHHSVKVSLEILSSPVARLLIA-------------CVRPNP 131
           RW+AL I E++ R+H  LH H  VK+  ++L       L+A              +    
Sbjct: 33  RWDALLIPEKILRVHSSLHFHQPVKIVHKVLDPIYLTFLVAIFTIVANTNVNISIIEICT 92

Query: 132 PSSPSSFHVTEYCILYLFPALCGNGVSLSAISLIFPPYGLKVSAGLFSSIIFLSIPSRSA 183
             +PSS  +TEY IL +FPA CG GVS + ISLI PPY L    GL +SIIF   PSRS+
Sbjct: 93  SRAPSSCQLTEYWILNMFPARCGKGVSDAGISLIRPPYELNTIPGLPNSIIFFHSPSRSS 152

BLAST of CmoCh03G014620 vs. NCBI nr
Match: ESR44886.1 (hypothetical protein CICLE_v10003819mg, partial [Citrus clementina])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-10
Identity = 44/84 (52.38%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 72  RWNALFISEEVARIHHGLHLHHSVKVSLEILSSPVARLLIACVRPNPPSSPSSFHVTEYC 131
           R NALF+SEE+ RIHH  H+H  V++ LEIL +P A  L ACV      S        Y 
Sbjct: 8   RGNALFVSEEIFRIHHSFHMHQPVEIVLEILFAPNACFLNACVAQFVVCSNVKI---PYK 67

Query: 132 ILYLFPALCGNGVSLSAISLIFPP 156
            +Y  PALCGNG+S S ISLIFPP
Sbjct: 68  SVYRLPALCGNGISDSEISLIFPP 88

BLAST of CmoCh03G014620 vs. NCBI nr
Match: GAY62053.1 (hypothetical protein CUMW_214820, partial [Citrus unshiu])

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-10
Identity = 45/84 (53.57%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 72  RWNALFISEEVARIHHGLHLHHSVKVSLEILSSPVARLLIACVRPNPPSSPSSFHVTEYC 131
           R +AL ISEE+ RIHH  HLH  V++ LEIL SP A  L ACV      S        Y 
Sbjct: 8   RRDALLISEEIFRIHHSFHLHKPVEIVLEILLSPNACFLNACVAQFVVCSNVKI---PYK 67

Query: 132 ILYLFPALCGNGVSLSAISLIFPP 156
            +Y+ PALCGNG+S S ISLIFPP
Sbjct: 68  SVYMLPALCGNGISDSEISLIFPP 88

BLAST of CmoCh03G014620 vs. NCBI nr
Match: ONI11268.1 (hypothetical protein PRUPE_4G097400 [Prunus persica])

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-04
Identity = 41/98 (41.84%), Postives = 51/98 (52.04%), Query Frame = 0

Query: 85  IHHGLHLHHSVKVSLEILSSPVARLLIACVRPNPPSSPSSFHVTEYCILYLFPALCGNGV 144
           I+  LHL   +KV +E+L S      IA V     ++        Y IL  FPA CG GV
Sbjct: 14  INSSLHLQQPIKVVIEVLQSINLPFFIAIVTKCIDTNVK----VPYWILNKFPARCGKGV 73

Query: 145 SLSAISLIFPPYGLKVSAGLFSSIIFLSIPSRSALEIG 183
           S + I LIFPPYGL  +  L S IIF    +  +LEIG
Sbjct: 74  SEARIWLIFPPYGLNTNPVLPSLIIFFHKHANPSLEIG 107

BLAST of CmoCh03G014620 vs. NCBI nr
Match: KAG7963884.1 (hypothetical protein I3843_09G139300 [Carya illinoinensis])

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-04
Identity = 43/104 (41.35%), Postives = 54/104 (51.92%), Query Frame = 0

Query: 84  RIHHGLHLHHSVKVSLEI-----LSSPVARLLIACVRPNPPSSPSSFHVTEYCILYLFPA 143
           RI+  L+LH  VKV +E+     L   +A L+IA          ++  V  Y IL  FPA
Sbjct: 11  RIYCSLNLHQPVKVVIEVFDPINLPFFIAILIIAI--------DTNVKVPIYWILNKFPA 70

Query: 144 LCGNGVSLSAISLIFPPYGLKVSAGLFSSIIFLSIPSRSALEIG 183
            CG GV+ + ISLIFPPYGLK        IIF       +LEIG
Sbjct: 71  RCGKGVAEAGISLIFPPYGLKTKPVFPLIIIFFHSQFNPSLEIG 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
V4T5R05.2e-1152.38Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10003... [more]
A0A2H5QBV01.2e-1053.57Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_214820 PE=4... [more]
A0A251PI879.6e-0541.84Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G097400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
CBI34082.38.0e-1441.94unnamed protein product, partial [Vitis vinifera][more]
ESR44886.11.1e-1052.38hypothetical protein CICLE_v10003819mg, partial [Citrus clementina][more]
GAY62053.12.4e-1053.57hypothetical protein CUMW_214820, partial [Citrus unshiu][more]
ONI11268.12.0e-0441.84hypothetical protein PRUPE_4G097400 [Prunus persica][more]
KAG7963884.13.4e-0441.35hypothetical protein I3843_09G139300 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G014620.1CmoCh03G014620.1mRNA