CmoCh03G014180 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G014180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DEAD-box ATP-dependent RNA helicase 1
Location	Cmo_Chr03: 10259069 .. 10260371 (-)
RNA-Seq Expression	CmoCh03G014180
Synteny	CmoCh03G014180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGAAGCAGAAGCGCAAGAGCATCCCTGTTCTACCATGGATGCGAAGCCCTGTCGACGTCTCTTTATTCGAGGAATGCCTCTTTGAGATCCTCCCCTTGCTCGACCCCCCGCCAATTTCCTATTTATTCTGAATCATTTGAATGGTTAATGCCTTCCTATCATCGAGCTTTTCTTTTGTTTATGCATCAAATCGATTTCTGTATCCTTCTATTTGATATTTGTCATTTATTGCACTCCGTTGGAAACAAATGAATCCATGGTGGATATCTCATTGAAGATTTAACAAGCTGCAAAATGTGTTCATATTTAGAAGAGCATTGAGCTGTGATATATCTGTTAATTGTATCACATGTAATTGAAATTTTGGTTATGCACCATATGGCTCGGGATTTGCTGAATTGCATGAAATATGCTCACGGCTATTTTTCAATCCGGTTAAAGAGGTTCTTACTGCGGTTGCGCCTGCTGTGGGCTTATCTGTAGGTCTGCCTGTTGGTCAATCCTCCATAGCAGATGAAATTCTGAGCTCATCAAGGGACCTAAGCTCAAGGCCGGCATCTGTTATGATCCCGAAGATTTTTTGGTTGAGCTACCGAGTTCTGTGGACATATTGGTGGCAACACCTGGAAGATTGATGGACAATATTAACTTCACAAAGGAATTGCAAGTTTTACTTCTTGTAGCTATGGTTATACTGTTGAAGTTTTGTTCACCATTGTTATAATTAATCCTCATAACTTTTTTTACTGGCATGTTCTTTTTGGTTTACCTCAAAATTATAGTGCTGACTGCATATACTGTTTGGATTCATGCAGTGGTGTTGATGGGGGTTTTAAGGGTCAACCTTACCGAAGGCTTGCAAAGATGGTTCTCTCTGCAACGCCTAACAGGCTCCAGGCAAGCTTGCTCAGCTTGATTTGCATCACGCTCTATTCTTAACCACTGGGAAAAGAAGATATAAACTTCCGGAGTAATTAGAATCATACATGATGGTAAATTGGCCTGTCTCTTAATTAGTGTGCGAATAAATCATATCTTAGGTGTAAAAACCTCTCCCTAGTAAAGGTGTAGAAACCTCTCCCTAGTAGACACATTTTAAAAACTTGAGGGGAAGTCCGGAAGAGAAAACTCAAAAAAGACAATATCTGCTAATGATAGATTTGGGCGATTACAGTTTGTTTCTGGTTAAAAGAAGTTAGAGATGAATAATTGAGCAATATGTCGTTGTTCAACTTGCTTACTCTTAGATTCTTATGTTTCAGGTTAGGCGTTTCAAGAGATTGCTACACGGATTGA

mRNA sequence

ATGGCGGAGAAGCAGAAGCGCAAGAGCATCCCTGTTCTACCATGGATGCGAAGCCCTGTCGACGGACCTAAGCTCAAGGCCGGCATCTGTTATGATCCCGAAGATTTTTTGGTTGAGCTACCGAGTTCTGTGGACATATTGGTGGCAACACCTGGAAGATTGATGGACAATATTAACTTCACAAAGGAATTGCAAGTTTTACTTCTTGTAGCTATGGCTCCAGGCAAGCTTGCTCAGCTTGATTTGCATCACGCTCTATTCTTAACCACTGGGAAAAGAAGATATAAACTTCCGGAGTTAGGCGTTTCAAGAGATTGCTACACGGATTGA

Coding sequence (CDS)

ATGGCGGAGAAGCAGAAGCGCAAGAGCATCCCTGTTCTACCATGGATGCGAAGCCCTGTCGACGGACCTAAGCTCAAGGCCGGCATCTGTTATGATCCCGAAGATTTTTTGGTTGAGCTACCGAGTTCTGTGGACATATTGGTGGCAACACCTGGAAGATTGATGGACAATATTAACTTCACAAAGGAATTGCAAGTTTTACTTCTTGTAGCTATGGCTCCAGGCAAGCTTGCTCAGCTTGATTTGCATCACGCTCTATTCTTAACCACTGGGAAAAGAAGATATAAACTTCCGGAGTTAGGCGTTTCAAGAGATTGCTACACGGATTGA

Protein sequence

MAEKQKRKSIPVLPWMRSPVDGPKLKAGICYDPEDFLVELPSSVDILVATPGRLMDNINFTKELQVLLLVAMAPGKLAQLDLHHALFLTTGKRRYKLPELGVSRDCYTD

Homology

[Close]

BLAST of CmoCh03G014180 vs. ExPASy Swiss-Prot
Match: Q7FGZ2 (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana OX=3702 GN=RH1 PE=2 SV=3)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-11
Identity = 55/154 (35.71%), Postives = 60/154 (38.96%), Query Frame = 0


Query: 23  PKLKAGICYDPEDFLVELPSSVDILVATPGRLMDNINFTK-------------ELQVLL- 82
           PKL AGICYDP+D    L S+VDILVATPGRLMD+IN TK             E   LL 
Sbjct: 155 PKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLR 214

Query: 83  -------------------------------------------------------LVAMA 100
                                                                  LV M 
Sbjct: 215 EAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMV 274

[Close]

BLAST of CmoCh03G014180 vs. ExPASy TrEMBL
Match: A0A0A0KNZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524090 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16
Identity = 63/154 (40.91%), Postives = 70/154 (45.45%), Query Frame = 0


Query: 23  PKLKAGICYDPEDFLVELPSSVDILVATPGRLMDNINFTK-----ELQVLLL-------- 82
           PKL+AGICYDP+DFLVEL SSVDILVATPGRLMD+INFTK      L+ L++        
Sbjct: 153 PKLEAGICYDPDDFLVELQSSVDILVATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLR 212

Query: 83  ------------------------------------------------------------ 100
                                                                       
Sbjct: 213 EAYQSWLPTVLQLTHADDSSIIFPSYISNPCSDGSLKTIRRFGVERGFKGKPYPRLAKMV 272

[Close]

BLAST of CmoCh03G014180 vs. ExPASy TrEMBL
Match: A0A5D3CPK1 (DEAD-box ATP-dependent RNA helicase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009230 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.6e-15
Identity = 62/154 (40.26%), Postives = 68/154 (44.16%), Query Frame = 0


Query: 23  PKLKAGICYDPEDFLVELPSSVDILVATPGRLMDNINFT-----KELQVLLL-------- 82
           PKL+AGICYDPED LV L SSVDILVATPGRLMD+INFT     K L+ L++        
Sbjct: 107 PKLEAGICYDPEDVLVALQSSVDILVATPGRLMDHINFTKGFTLKHLRYLVIDETDRLLR 166

Query: 83  ------------------------------------------------------------ 100
                                                                       
Sbjct: 167 EAYQSWLPTVLQLTHADDSSIIFPSYISNPCSAGSLKTIRRFGVERGFKGKPYPRLAKMI 226

[Close]

BLAST of CmoCh03G014180 vs. ExPASy TrEMBL
Match: A0A1S3AZ50 (DEAD-box ATP-dependent RNA helicase 1 OS=Cucumis melo OX=3656 GN=LOC103484346 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.6e-15
Identity = 62/154 (40.26%), Postives = 68/154 (44.16%), Query Frame = 0


Query: 23  PKLKAGICYDPEDFLVELPSSVDILVATPGRLMDNINFT-----KELQVLLL-------- 82
           PKL+AGICYDPED LV L SSVDILVATPGRLMD+INFT     K L+ L++        
Sbjct: 153 PKLEAGICYDPEDVLVALQSSVDILVATPGRLMDHINFTKGFTLKHLRYLVIDETDRLLR 212

Query: 83  ------------------------------------------------------------ 100
                                                                       
Sbjct: 213 EAYQSWLPTVLQLTHADDSSIIFPSYISNPCSAGSLKTIRRFGVERGFKGKPYPRLAKMI 272

[Close]

BLAST of CmoCh03G014180 vs. ExPASy TrEMBL
Match: A0A6J1EFN8 (DEAD-box ATP-dependent RNA helicase 1 OS=Cucurbita moschata OX=3662 GN=LOC111433692 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 61/154 (39.61%), Postives = 68/154 (44.16%), Query Frame = 0


Query: 23  PKLKAGICYDPEDFLVELPSSVDILVATPGRLMDNINFTK-----ELQVLLL-------- 82
           PKL+AGICYDPEDF V+L SSVDILVATPGRLMD+INFTK      L+ L++        
Sbjct: 153 PKLEAGICYDPEDFSVQLQSSVDILVATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLR 212

Query: 83  ------------------------------------------------------------ 100
                                                                       
Sbjct: 213 ESYQSWLPTVLQLTHVDDENIIFPSYTSLPCSAGSLKTIRRFGIERGFKGACYPRFSKMV 272

[Close]

BLAST of CmoCh03G014180 vs. ExPASy TrEMBL
Match: A0A6J1KPB8 (DEAD-box ATP-dependent RNA helicase 1 OS=Cucurbita maxima OX=3661 GN=LOC111497067 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 59/154 (38.31%), Postives = 66/154 (42.86%), Query Frame = 0


Query: 23  PKLKAGICYDPEDFLVELPSSVDILVATPGRLMDNINFTK-------------------- 82
           PKL+AGICYDPEDF V+L SSVDILVATPGRLMD+INFTK                    
Sbjct: 153 PKLEAGICYDPEDFSVQLQSSVDILVATPGRLMDHINFTKGFTLQHLCYLVIDETDRLLR 212

Query: 83  ---------------------------------------------------------ELQ 100
                                                                    ++ 
Sbjct: 213 ESYQSWLPTVLQLTHVDDENIIFPSYTSLPCSAGFLKTIRRFGIERGFKGACYPRFSKMV 272

[Close]

BLAST of CmoCh03G014180 vs. NCBI nr
Match: XP_004134588.1 (DEAD-box ATP-dependent RNA helicase 1 [Cucumis sativus] >KGN49421.1 hypothetical protein Csa_003238 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 5.1e-16
Identity = 63/154 (40.91%), Postives = 70/154 (45.45%), Query Frame = 0


Query: 23  PKLKAGICYDPEDFLVELPSSVDILVATPGRLMDNINFTK-----ELQVLLL-------- 82
           PKL+AGICYDP+DFLVEL SSVDILVATPGRLMD+INFTK      L+ L++        
Sbjct: 153 PKLEAGICYDPDDFLVELQSSVDILVATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLR 212

Query: 83  ------------------------------------------------------------ 100
                                                                       
Sbjct: 213 EAYQSWLPTVLQLTHADDSSIIFPSYISNPCSDGSLKTIRRFGVERGFKGKPYPRLAKMV 272

[Close]

BLAST of CmoCh03G014180 vs. NCBI nr
Match: XP_023517664.1 (DEAD-box ATP-dependent RNA helicase 1 [Cucurbita pepo subsp. pepo] >XP_023517665.1 DEAD-box ATP-dependent RNA helicase 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-15
Identity = 62/154 (40.26%), Postives = 69/154 (44.81%), Query Frame = 0


Query: 23  PKLKAGICYDPEDFLVELPSSVDILVATPGRLMDNINFTK-----ELQVLLL-------- 82
           PKL+AGICYDPEDFLV+L SSVDILVATPGRLMD+INFTK      L+ L++        
Sbjct: 153 PKLEAGICYDPEDFLVQLQSSVDILVATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLR 212

Query: 83  ------------------------------------------------------------ 100
                                                                       
Sbjct: 213 ESYQSWLPTVLQLTHVDDENIIFPSYTSLPCSAGSLKTIRRFGIERGFKGACYPRFSKMV 272

[Close]

BLAST of CmoCh03G014180 vs. NCBI nr
Match: KAA0052523.1 (DEAD-box ATP-dependent RNA helicase 1 [Cucumis melo var. makuwa] >TYK13302.1 DEAD-box ATP-dependent RNA helicase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 7.4e-15
Identity = 62/154 (40.26%), Postives = 68/154 (44.16%), Query Frame = 0


Query: 23  PKLKAGICYDPEDFLVELPSSVDILVATPGRLMDNINFT-----KELQVLLL-------- 82
           PKL+AGICYDPED LV L SSVDILVATPGRLMD+INFT     K L+ L++        
Sbjct: 107 PKLEAGICYDPEDVLVALQSSVDILVATPGRLMDHINFTKGFTLKHLRYLVIDETDRLLR 166

Query: 83  ------------------------------------------------------------ 100
                                                                       
Sbjct: 167 EAYQSWLPTVLQLTHADDSSIIFPSYISNPCSAGSLKTIRRFGVERGFKGKPYPRLAKMI 226

[Close]

BLAST of CmoCh03G014180 vs. NCBI nr
Match: XP_008439599.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 7.4e-15
Identity = 62/154 (40.26%), Postives = 68/154 (44.16%), Query Frame = 0


Query: 23  PKLKAGICYDPEDFLVELPSSVDILVATPGRLMDNINFT-----KELQVLLL-------- 82
           PKL+AGICYDPED LV L SSVDILVATPGRLMD+INFT     K L+ L++        
Sbjct: 153 PKLEAGICYDPEDVLVALQSSVDILVATPGRLMDHINFTKGFTLKHLRYLVIDETDRLLR 212

Query: 83  ------------------------------------------------------------ 100
                                                                       
Sbjct: 213 EAYQSWLPTVLQLTHADDSSIIFPSYISNPCSAGSLKTIRRFGVERGFKGKPYPRLAKMI 272

[Close]

BLAST of CmoCh03G014180 vs. NCBI nr
Match: KAG7026449.1 (DEAD-box ATP-dependent RNA helicase 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 61/154 (39.61%), Postives = 68/154 (44.16%), Query Frame = 0


Query: 23  PKLKAGICYDPEDFLVELPSSVDILVATPGRLMDNINFTK-----ELQVLLL-------- 82
           PKL+AGICYDPEDF V+L SSVDILVATPGRLMD+INFTK      L+ L++        
Sbjct: 154 PKLEAGICYDPEDFSVQLQSSVDILVATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLR 213

Query: 83  ------------------------------------------------------------ 100
                                                                       
Sbjct: 214 ESYQSWLPTVLQLTHVDDENIIFPSYTSLPCSAGSLKTKRRFGIERGFKGACYPRFSKMV 273

[Close]

BLAST of CmoCh03G014180 vs. TAIR 10
Match: AT4G15850.1 (RNA helicase 1 )

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-12
Identity = 55/154 (35.71%), Postives = 60/154 (38.96%), Query Frame = 0


Query: 23  PKLKAGICYDPEDFLVELPSSVDILVATPGRLMDNINFTK-------------ELQVLL- 82
           PKL AGICYDP+D    L S+VDILVATPGRLMD+IN TK             E   LL 
Sbjct: 155 PKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLR 214

Query: 83  -------------------------------------------------------LVAMA 100
                                                                  LV M 
Sbjct: 215 EAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMV 274

The following BLAST results are available for this feature:

BLAST of CmoCh03G014180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7FGZ2	3.0e-11	35.71	DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana OX=3702 GN=RH1 PE=...	[more]

BLAST of CmoCh03G014180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNZ7	2.5e-16	40.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524090 PE=4 SV=1	[more]
A0A5D3CPK1	3.6e-15	40.26	DEAD-box ATP-dependent RNA helicase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3AZ50	3.6e-15	40.26	DEAD-box ATP-dependent RNA helicase 1 OS=Cucumis melo OX=3656 GN=LOC103484346 PE...	[more]
A0A6J1EFN8	1.0e-14	39.61	DEAD-box ATP-dependent RNA helicase 1 OS=Cucurbita moschata OX=3662 GN=LOC111433...	[more]
A0A6J1KPB8	1.8e-14	38.31	DEAD-box ATP-dependent RNA helicase 1 OS=Cucurbita maxima OX=3661 GN=LOC11149706...	[more]

BLAST of CmoCh03G014180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134588.1	5.1e-16	40.91	DEAD-box ATP-dependent RNA helicase 1 [Cucumis sativus] >KGN49421.1 hypothetical...	[more]
XP_023517664.1	4.3e-15	40.26	DEAD-box ATP-dependent RNA helicase 1 [Cucurbita pepo subsp. pepo] >XP_023517665...	[more]
KAA0052523.1	7.4e-15	40.26	DEAD-box ATP-dependent RNA helicase 1 [Cucumis melo var. makuwa] >TYK13302.1 DEA...	[more]
XP_008439599.1	7.4e-15	40.26	PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Cucumis melo]	[more]
KAG7026449.1	2.1e-14	39.61	DEAD-box ATP-dependent RNA helicase 1 [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of CmoCh03G014180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15850.1	2.1e-12	35.71	RNA helicase 1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G014180.1	CmoCh03G014180.1	mRNA