CmoCh03G013780 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G013780
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr03: 10118420 .. 10120147 (+)
RNA-Seq ExpressionCmoCh03G013780
SyntenyCmoCh03G013780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATGCAATCGATAGGAAGAAGACGAAGAAGAGGAGAGCATTCAGCATCCAGAGGCTAAGAGATTCGTGGAAGTGGAAATTCCTTAAGGATTTCAAGTGGAAGAGATTGAATCTCCACATCGGTTTCTTAGATGCTATAATCTTTCGAATCGCTTCTCTGTTTGAGGCCATTGCGTTGATAGGCATCGCCGGCTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTCTGATCGATTCTGCCAACTCAATCGGTCAATTTCTATGTTCTTCATCATAACTTCGTAATTAACCGAACTCTGTATGTATTTGTTATATAAGTTTCCTTCCTCTTCAGTTTTTCTTTTCCAGTCGTTCTTAATTTGTTCATTAATTTGTTGTCTCTGGCCAAGCACTGCAACACAAAATGTAGATCGGCTTTCGAATCTCTCTTCTCTATTTGAATCGTTTTCTCTGTGGCTTCGATCTGACGAACTCGTTAATCTAGCAAATTCAATTCATTATAAAATTATATTGAAGAAGTTTGTTGGTATGGTAGATTGGCGAAGGGTAAAACTAAGAAGAATTCATCTGCAAACAAAGGTGCGGACGAATTTAGATTTTGCTTGGAGAATCAATATCATTTTCATGCGAGTGGAGAAATGAATAACTTAGGTCAGAATCTTACTGGAAACAAACTGGCCATCGACGGCTAAGAAGGAAGAGTGACAATCGTGGAAGGATTGAATAATCCTCTTCCAACTGTCTTGAATTATTCCAACATTAGAGCCTTTCACGTTTGTATCTTCTCTGGCAACATTCACTTCTCTTAATTAATTAACGAATTGAAGAAGGATCGATTTATTCAAAGTCATAACTCGTATTTGGTTTAAATTAATGCTCCAAATTTCATTCCTTAAAGTTTGACCAGCACTAAAGAATAGCTTGCATTATAAGTTCATCGCAATTTGCAATATAATTTTTAATTTCCAAGTACTAACCATTTCTCTATGCCTCCAATTTGTTAAATCAAATACTCAAAAATTGGGGAGAATCCCGCGAAAGCTTAAGTTGGTAATTGGCTAAGATCTATTCTCACGTGAGAAGTGCACTAAGCAATTAGGTAGCAATTAGGTAGTGCTTTCATTTTGTTGCTTTAATGAAATTGGATTCCTCCTAGCTGCCAATTCGCAGACTCGTTTCGTTGTCATAGTTCTAGGCTCATTAGACCCTCTTTTTTATGCCAAGATCGTGAGAATGGACACAAGACCGCTAGAAATAGTTAAGAAATTGAACACCTAAGTCAGGCCCTCTCCTGTTATTTATGGACGTTAGCTCACATTTTAAAAATGCATATGTTGGGGGAGAAGTTTCTACACCCTTGTAAAAATGATTAGTTCTCATCTCCAATTGATTTGAGATGTCACAATCCACCTTCCTTGGTATCTCACAAATACACTAAATTAGATCACCAACTCTCCAAAATAGAATTTCGAATCTTCACTCCTTGAATCTACATTTGAATGATTATAGCCTTTTCAATCAATTAAAACCACATTTCACCTGTAACCTCTCAATCATTTTCCTATTGAATTAGTCCGTTAAAAAAAAAAAAAATTGAACTTCAAAATAATGTTTTGTAAAGAAAGTTCAGGTAAATCTAATTTAACCGTGACAATAAAATACTGTGCATTTTTCGAACTTCGATACATAAATATCTTCTTTTTTGGGAGCAGGTTGAGCAGTAG

mRNA sequence

ATGGATGATGCAATCGATAGGAAGAAGACGAAGAAGAGGAGAGCATTCAGCATCCAGAGGCTAAGAGATTCGTGGAAGTGGAAATTCCTTAAGGATTTCAAGTGGAAGAGATTGAATCTCCACATCGGTTTCTTAGATGCTATAATCTTTCGAATCGCTTCTCTGTTTGAGGCCATTGCGTTGATAGGCATCGCCGGCTTCTTCTTCCTCTGTTGTGGCGTTTTTCTTTTCCAGTCGTTCTTAATTTGTTCATTAATTTGTTGTCTCTGGCCAAGCACTGCAACACAAAATGTAGATCGGCTTTCGAATCTCTCTTCTCTATTTGAATCGTTTTCTCTGTGGCTTCGATCTGACGAACTCGTTAATCTAGCAAATTCAATTCATTATAAAATTATATTGAAGAAGTTTGTTGGTATGGTAGATTGGCGAAGGGTTGAGCAGTAG

Coding sequence (CDS)

ATGGATGATGCAATCGATAGGAAGAAGACGAAGAAGAGGAGAGCATTCAGCATCCAGAGGCTAAGAGATTCGTGGAAGTGGAAATTCCTTAAGGATTTCAAGTGGAAGAGATTGAATCTCCACATCGGTTTCTTAGATGCTATAATCTTTCGAATCGCTTCTCTGTTTGAGGCCATTGCGTTGATAGGCATCGCCGGCTTCTTCTTCCTCTGTTGTGGCGTTTTTCTTTTCCAGTCGTTCTTAATTTGTTCATTAATTTGTTGTCTCTGGCCAAGCACTGCAACACAAAATGTAGATCGGCTTTCGAATCTCTCTTCTCTATTTGAATCGTTTTCTCTGTGGCTTCGATCTGACGAACTCGTTAATCTAGCAAATTCAATTCATTATAAAATTATATTGAAGAAGTTTGTTGGTATGGTAGATTGGCGAAGGGTTGAGCAGTAG

Protein sequence

MDDAIDRKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEAIALIGIAGFFFLCCGVFLFQSFLICSLICCLWPSTATQNVDRLSNLSSLFESFSLWLRSDELVNLANSIHYKIILKKFVGMVDWRRVEQ
Homology
BLAST of CmoCh03G013780 vs. ExPASy TrEMBL
Match: A0A0A0KLX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1  MDDAIDRKKTK--KRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEA 60
          MDDAIDRKKTK  K+R FS QRLRDSWKWKFLK+FKWKRLNL +GF DAIIFRI SLFE 
Sbjct: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60

Query: 61 IALIGIAGFFFLCCG 74
          +AL+GIA FFFLCCG
Sbjct: 61 VALVGIASFFFLCCG 75

BLAST of CmoCh03G013780 vs. ExPASy TrEMBL
Match: A0A6P9EL64 (uncharacterized protein LOC108990492 OS=Juglans regia OX=51240 GN=LOC108990492 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.3e-08
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 11 KKRRAFSIQRLR-DSWKWKFL--KDFKWKRLNLHIGFLDAIIFRIASLFEAIALIGIAGF 70
          KK R  S ++LR  +W+WKF     F+WKRLNL + F+D ++FRIASLFEAI L+    F
Sbjct: 4  KKNRWISFKKLRGQNWRWKFFFGSAFRWKRLNLKLSFVDDLLFRIASLFEAIVLVARLCF 63

Query: 71 FFLCCG 74
          F+LCCG
Sbjct: 64 FYLCCG 69

BLAST of CmoCh03G013780 vs. ExPASy TrEMBL
Match: A0A7N2LSF8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.4e-08
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 11 KKRRAFSIQRLR--DSWKWKFL-KDFKWKRLNLHIGFLDAIIFRIASLFEAIALIGIAGF 70
          KK R    +RLR   +W+WKFL   FKWKRLNL + F+D ++FRI S+FEAI L+    F
Sbjct: 4  KKNRWIFFKRLRMQTAWRWKFLGSAFKWKRLNLQLSFVDDVLFRILSVFEAIVLVATLCF 63

Query: 71 FFLCCG 74
          F+LCCG
Sbjct: 64 FYLCCG 69

BLAST of CmoCh03G013780 vs. ExPASy TrEMBL
Match: A0A1R3FVP9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.7e-08
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 1  MDDAIDRKKTKKRRAFSIQRLRDSWKWKFL-KDFKWKRLNLHIGFLDAIIFRIASLFEAI 60
          MD       + KR     + +++SW+WKFL   FKWKRLN+ + F D ++FRIAS+ EAI
Sbjct: 1  MDKTSSSSSSSKRWVLFKRLIKESWRWKFLGSAFKWKRLNIQLSFFDDVLFRIASVLEAI 60

Query: 61 ALIGIAGFFFLCCG 74
           L+    FF+LCCG
Sbjct: 61 YLVATLCFFYLCCG 74

BLAST of CmoCh03G013780 vs. ExPASy TrEMBL
Match: A0A6J1B6L1 (uncharacterized protein LOC110424571 OS=Herrania umbratica OX=108875 GN=LOC110424571 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 9  KTKKRRAFSIQRLRDSWKWKFL-KDFKWKRLNLHIGFLDAIIFRIASLFEAIALIGIAGF 68
          +TK+   F     ++SW+WKFL   FKWKRLN+ + F+D ++FRIAS+ EAI L+    F
Sbjct: 3  RTKRWVLFKRLIKKESWRWKFLGSAFKWKRLNIQLSFVDDVLFRIASVLEAIFLVATLCF 62

Query: 69 FFLCCG 74
          F+LCCG
Sbjct: 63 FYLCCG 68

BLAST of CmoCh03G013780 vs. NCBI nr
Match: KAG7034699.1 (hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 4.4e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  MDDAIDRKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEAIA 60
          MDDAIDRKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEAIA
Sbjct: 1  MDDAIDRKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEAIA 60

Query: 61 LIGIAGFFFLCCG 74
          LIGIAGFFFLCCG
Sbjct: 61 LIGIAGFFFLCCG 73

BLAST of CmoCh03G013780 vs. NCBI nr
Match: KAG6581417.1 (hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MDDAIDRKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEAIA 60
          MDDAIDRKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEAIA
Sbjct: 1  MDDAIDRKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEAIA 60

Query: 61 LIGIAGFF 69
          LIGIAGFF
Sbjct: 61 LIGIAGFF 68

BLAST of CmoCh03G013780 vs. NCBI nr
Match: KGN49382.1 (hypothetical protein Csa_004198 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 4.0e-24
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1  MDDAIDRKKTK--KRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEA 60
          MDDAIDRKKTK  K+R FS QRLRDSWKWKFLK+FKWKRLNL +GF DAIIFRI SLFE 
Sbjct: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60

Query: 61 IALIGIAGFFFLCCG 74
          +AL+GIA FFFLCCG
Sbjct: 61 VALVGIASFFFLCCG 75

BLAST of CmoCh03G013780 vs. NCBI nr
Match: XP_023929751.1 (uncharacterized protein LOC112041078 [Quercus suber])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-08
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 11 KKRRAFSIQRLR--DSWKWKFL-KDFKWKRLNLHIGFLDAIIFRIASLFEAIALIGIAGF 70
          KK R    +RLR   +W+WKFL   FKWKRLNLH+ F+D ++FRI S+FEAI L+    F
Sbjct: 4  KKNRWIFFRRLRMQTAWRWKFLGSAFKWKRLNLHLSFVDDVLFRILSVFEAIVLVATLCF 63

Query: 71 FFLCCG 74
          F+LCCG
Sbjct: 64 FYLCCG 69

BLAST of CmoCh03G013780 vs. NCBI nr
Match: XP_035544743.1 (uncharacterized protein LOC108990492 [Juglans regia])

HSP 1 Score: 68.2 bits (165), Expect = 6.9e-08
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 11 KKRRAFSIQRLR-DSWKWKFL--KDFKWKRLNLHIGFLDAIIFRIASLFEAIALIGIAGF 70
          KK R  S ++LR  +W+WKF     F+WKRLNL + F+D ++FRIASLFEAI L+    F
Sbjct: 4  KKNRWISFKKLRGQNWRWKFFFGSAFRWKRLNLKLSFVDDLLFRIASLFEAIVLVARLCF 63

Query: 71 FFLCCG 74
          F+LCCG
Sbjct: 64 FYLCCG 69

BLAST of CmoCh03G013780 vs. TAIR 10
Match: AT5G46295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 9.0e-06
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 0

Query: 34 KWKRLNLHIGFLDAIIFRIASLFEAIALIGIAGFFFLCCG 74
          KWKRLNL + FL+ + +RI S+ EA+ L+    FFFLCCG
Sbjct: 29 KWKRLNLKMTFLETLRYRIMSIIEAMVLVSKLAFFFLCCG 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLX91.9e-2481.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1[more]
A0A6P9EL643.3e-0854.55uncharacterized protein LOC108990492 OS=Juglans regia OX=51240 GN=LOC108990492 P... [more]
A0A7N2LSF84.4e-0854.55Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A1R3FVP95.7e-0845.95Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1[more]
A0A6J1B6L12.2e-0750.00uncharacterized protein LOC110424571 OS=Herrania umbratica OX=108875 GN=LOC11042... [more]
Match NameE-valueIdentityDescription
KAG7034699.14.4e-31100.00hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6581417.11.0e-27100.00hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49382.14.0e-2481.33hypothetical protein Csa_004198 [Cucumis sativus][more]
XP_023929751.11.1e-0856.06uncharacterized protein LOC112041078 [Quercus suber][more]
XP_035544743.16.9e-0854.55uncharacterized protein LOC108990492 [Juglans regia][more]
Match NameE-valueIdentityDescription
AT5G46295.19.0e-0655.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33726:SF3TRANSMEMBRANE PROTEINcoord: 12..73
NoneNo IPR availablePANTHERPTHR33726TRANSMEMBRANE PROTEINcoord: 12..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G013780.1CmoCh03G013780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane