CmoCh03G013350 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G013350
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr03: 9935432 .. 9936216 (+)
RNA-Seq Expression	CmoCh03G013350
Synteny	CmoCh03G013350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTTATTTTATAACATTATCTTAATCTCTGTTTTTCTGGGGTTCAAATTCAATTGGGTTCCCGACTCCATCAATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTCATTGCCACTTCCCATACTCCCACAGTTCAGAAGGTATCCAAAGCCACTTCAGACAGATTGCTTCAGAAATTCTTCGATGCCACAGAATTTGGATTCGATTACGAGAGAAGCGGTCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATCTGAGCGCTTCGGGTGAAGTTTTCAATCAAGCGGATTTGCATAGGAAACTAGAGAGTGTGTTGAGTTCTCGTCGGAAAAGAGAGGAGAAATGTCGTTTCAAATTCCGAGTAAGCTGCTGCCTTTCACTTCAGATTTGAACTAACAAATCTCTTTGATATTCGCTTTTGTGGTTCTGGGGTTCTCTGGAATTAGATGTATGCAGTTTATATGTTGTAGGTGTTTTGGTGCTCTGTGAGGCAAATCTGAAAGCTGCCATCTTTACAGCTATGCTTCCATTCTTCCATTACGGGATCAATAATGGAGCTTCACAGTTGAAGGGTAGAAAACAAAAACAGAGAGGGCCCAAGAAGACAAAAAAGATCCACCCAATACAGTTCCTATTTTATTTATTCTGTACAATTTCAGTAGTTGATATTAACAGATTGTTGCTAATCCATAGTTGAAGCCTCTAACATGAATCTCTTTGAGCTGTTAATCTGAACCCCAACTCTTTCAAGTTCCAATTGAACACTGTGCTTTCTTTTT

mRNA sequence

CCTTTATTTTATAACATTATCTTAATCTCTGTTTTTCTGGGGTTCAAATTCAATTGGGTTCCCGACTCCATCAATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTCATTGCCACTTCCCATACTCCCACAGTTCAGAAGGTATCCAAAGCCACTTCAGACAGATTGCTTCAGAAATTCTTCGATGCCACAGAATTTGGATTCGATTACGAGAGAAGCGGTCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATCTGAGCGCTTCGGGTGAAGTTTTCAATCAAGCGGATTTGCATAGGAAACTAGAGAGTGTGTTGAGTTCTCGTCGGAAAAGAGAGGAGAAATGTCGTTTCAAATTCCGAGTGTTTTGGTGCTCTGTGAGGCAAATCTGAAAGCTGCCATCTTTACAGCTATGCTTCCATTCTTCCATTACGGGATCAATAATGGAGCTTCACAGTTGAAGGGTAGAAAACAAAAACAGAGAGGGCCCAAGAAGACAAAAAAGATCCACCCAATACAGTTCCTATTTTATTTATTCTGTACAATTTCAGTAGTTGATATTAACAGATTGTTGCTAATCCATAGTTGAAGCCTCTAACATGAATCTCTTTGAGCTGTTAATCTGAACCCCAACTCTTTCAAGTTCCAATTGAACACTGTGCTTTCTTTTT

Coding sequence (CDS)

ATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTCATTGCCACTTCCCATACTCCCACAGTTCAGAAGGTATCCAAAGCCACTTCAGACAGATTGCTTCAGAAATTCTTCGATGCCACAGAATTTGGATTCGATTACGAGAGAAGCGGTCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATCTGAGCGCTTCGGGTGAAGTTTTCAATCAAGCGGATTTGCATAGGAAACTAGAGAGTGTGTTGAGTTCTCGTCGGAAAAGAGAGGAGAAATGTCGTTTCAAATTCCGAGTGTTTTGGTGCTCTGTGAGGCAAATCTGA

Protein sequence

MSIPELPFSPSNFIATSHTPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRVFWCSVRQI

Homology

[Close]

BLAST of CmoCh03G013350 vs. ExPASy TrEMBL
Match: A0A0A0KLQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519730 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.0e-35
Identity = 78/107 (72.90%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MSIPELPFSPSNFIATSHTPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQRS 60
           MSIPELPFSPSN       P VQ+VSK+TSDRLLQKFFDATEFGFDYERSGLWSPPLQR+
Sbjct: 1   MSIPELPFSPSN-------PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRT 60

Query: 61  VYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRVFWCSVRQI 108
           VYL++SG+V NQ DLH KL++VL+SR +  + C FKFRVFWC V+QI
Sbjct: 61  VYLTSSGQVLNQTDLHTKLQTVLNSRSRTHKSC-FKFRVFWCYVKQI 99

[Close]

BLAST of CmoCh03G013350 vs. ExPASy TrEMBL
Match: A0A2I4H1I2 (uncharacterized protein LOC109012687 isoform X1 OS=Juglans regia OX=51240 GN=LOC109012687 PE=4 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MSIPELPF---SPSNFIATSHTPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIPE PF   SPS  +  + +  V+ VSK  SDRL+QKF+D +EFGFDYE+SGLWSPP+
Sbjct: 1   MSIPESPFSSSSPSPSLPQTSSGRVELVSKFVSDRLVQKFYDVSEFGFDYEQSGLWSPPV 60

Query: 61  QRSVYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRVFWCSVR 106
           QR+V++S+SG++F +AD+  KL S L   R+  +     F V  C  R
Sbjct: 61  QRTVFMSSSGKIFTEADILSKLRSALQRHRRGRKHRSLCFNVLVCCFR 108

[Close]

BLAST of CmoCh03G013350 vs. ExPASy TrEMBL
Match: A0A2I4H1F6 (uncharacterized protein LOC109012687 isoform X3 OS=Juglans regia OX=51240 GN=LOC109012687 PE=4 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MSIPELPF---SPSNFIATSHTPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIPE PF   SPS  +  + +  V+ VSK  SDRL+QKF+D +EFGFDYE+SGLWSPP+
Sbjct: 1   MSIPESPFSSSSPSPSLPQTSSGRVELVSKFVSDRLVQKFYDVSEFGFDYEQSGLWSPPV 60

Query: 61  QRSVYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRVFWCSVR 106
           QR+V++S+SG++F +AD+  KL S L   R+  +     F V  C  R
Sbjct: 61  QRTVFMSSSGKIFTEADILSKLRSALQRHRRGRKHRSLCFNVLVCCFR 108

[Close]

BLAST of CmoCh03G013350 vs. ExPASy TrEMBL
Match: A0A2I4H1H1 (uncharacterized protein LOC109012687 isoform X2 OS=Juglans regia OX=51240 GN=LOC109012687 PE=4 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MSIPELPF---SPSNFIATSHTPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIPE PF   SPS  +  + +  V+ VSK  SDRL+QKF+D +EFGFDYE+SGLWSPP+
Sbjct: 1   MSIPESPFSSSSPSPSLPQTSSGRVELVSKFVSDRLVQKFYDVSEFGFDYEQSGLWSPPV 60

Query: 61  QRSVYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRVFWCSVR 106
           QR+V++S+SG++F +AD+  KL S L   R+  +     F V  C  R
Sbjct: 61  QRTVFMSSSGKIFTEADILSKLRSALQRHRRGRKHRSLCFNVLVCCFR 108

[Close]

BLAST of CmoCh03G013350 vs. ExPASy TrEMBL
Match: D7TJP6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g01630 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 22  VQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSASGEVFNQADLHRKLES 81
           VQ VSK+ SDRLLQKFFD++EF FDYE+SGLWSPP++RSV+LS+ G++FN+ ++  KL+S
Sbjct: 22  VQVVSKSVSDRLLQKFFDSSEFDFDYEQSGLWSPPIRRSVFLSSPGKIFNEHEMLAKLKS 81

Query: 82  VLSSRRKREEKCRFKFRVFWC 103
           V  SRR R  K R  F  FWC
Sbjct: 82  VTGSRRGR--KRRVCFYAFWC 100

[Close]

BLAST of CmoCh03G013350 vs. NCBI nr
Match: KAG6581370.1 (hypothetical protein SDJN03_21372, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217.2 bits (552), Expect = 6.7e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSIPELPFSPSNFIATSHTPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQRS 60
           MSIPELPFSPSNFIATSHTPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQRS
Sbjct: 1   MSIPELPFSPSNFIATSHTPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQRS 60

Query: 61  VYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRVFWCSVRQI 108
           VYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRVFWCSVRQI
Sbjct: 61  VYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRVFWCSVRQI 107

[Close]

BLAST of CmoCh03G013350 vs. NCBI nr
Match: KAG7034657.1 (hypothetical protein SDJN02_04387 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.8 bits (499), Expect = 9.4e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MSIPELPFSPSNFIATSHTPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQRS 60
          MSIPELPFSPSNFIATSHTPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQRS
Sbjct: 1  MSIPELPFSPSNFIATSHTPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQRS 60

Query: 61 VYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFR 99
          VYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFR
Sbjct: 61 VYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFR 98

[Close]

BLAST of CmoCh03G013350 vs. NCBI nr
Match: XP_038892892.1 (uncharacterized protein LOC120081796 [Benincasa hispida])

HSP 1 Score: 175.6 bits (444), Expect = 2.2e-40
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MSIPELPFSPSNFIATS--HTPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQ 60
           MSIP+LPFSPSNFIATS  +TP VQ+VSK+TSDRLLQKFFDATEFGFDYE SGLWSPPLQ
Sbjct: 1   MSIPQLPFSPSNFIATSNNNTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQ 60

Query: 61  RSVYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRVFWCSVR 106
           RSVYLS+SG+VFNQ DLH KL++VL+SRR+R + C FKFRVFWCSVR
Sbjct: 61  RSVYLSSSGQVFNQTDLHTKLQTVLNSRRRRHKSC-FKFRVFWCSVR 106

[Close]

BLAST of CmoCh03G013350 vs. NCBI nr
Match: KAE8647723.1 (hypothetical protein Csa_003961 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 4.7e-30
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 1   MSIPELPFSPSNFIATSHTPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQRS 60
           MSIPELPFSPSN       P VQ+VSK+TSDRLLQKFFDATEFGFDYERSGLWSPPLQR+
Sbjct: 1   MSIPELPFSPSN-------PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRT 60

Query: 61  VYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRVFWC 103
           VYL++SG+V NQ DLH KL++VL+SR +  + C FKFR   C
Sbjct: 61  VYLTSSGQVLNQTDLHTKLQTVLNSRSRTHKSC-FKFRFKCC 94

[Close]

BLAST of CmoCh03G013350 vs. NCBI nr
Match: KAG7026513.1 (hypothetical protein SDJN02_10515, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.0 bits (297), Expect = 2.5e-23
Identity = 62/86 (72.09%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 14 IATSHTP-TVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSASGEVFNQ 73
          I+T+ TP  VQ+V K+TSDRLLQKF DATEFGFDY+ SGLWSPPLQR+VYLS+SG VFN 
Sbjct: 3  ISTTATPKLVQRVPKSTSDRLLQKFCDATEFGFDYDTSGLWSPPLQRTVYLSSSGRVFNP 62

Query: 74 ADLHRKLESVLSSRRKREEKCRFKFR 99
           DL RKLE+VLSS R R E   FKFR
Sbjct: 63 TDLQRKLENVLSSDRSRRETSCFKFR 88

The following BLAST results are available for this feature:

BLAST of CmoCh03G013350 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G013350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLQ8	4.0e-35	72.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519730 PE=4 SV=1	[more]
A0A2I4H1I2	1.8e-19	50.00	uncharacterized protein LOC109012687 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]
A0A2I4H1F6	1.8e-19	50.00	uncharacterized protein LOC109012687 isoform X3 OS=Juglans regia OX=51240 GN=LOC...	[more]
A0A2I4H1H1	1.8e-19	50.00	uncharacterized protein LOC109012687 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]
D7TJP6	1.5e-18	61.73	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g01630 PE=4 SV=...	[more]

BLAST of CmoCh03G013350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581370.1	6.7e-53	100.00	hypothetical protein SDJN03_21372, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7034657.1	9.4e-47	100.00	hypothetical protein SDJN02_04387 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038892892.1	2.2e-40	81.31	uncharacterized protein LOC120081796 [Benincasa hispida]	[more]
KAE8647723.1	4.7e-30	70.59	hypothetical protein Csa_003961 [Cucumis sativus]	[more]
KAG7026513.1	2.5e-23	72.09	hypothetical protein SDJN02_10515, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh03G013350 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34287:SF2	OS06G0551500 PROTEIN	coord: 16..102
None	No IPR available	PANTHER	PTHR34287	OS06G0551500 PROTEIN-RELATED	coord: 16..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G013350.1	CmoCh03G013350.1	mRNA