CmoCh03G012670 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G012670
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	30S ribosomal protein S5
Location	Cmo_Chr03: 9672935 .. 9675167 (-)
RNA-Seq Expression	CmoCh03G012670
Synteny	CmoCh03G012670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGGAGTCCATTTGGGGATAAGCCTCCATCTCTGAACCCACAGACCCTCCCTCTCAACCCTTCCTTCCTTTCTTCAATGGCTTCTTCGATTATCGTCCCCATTTCCTCTCTTTCCCTGCGTTCCTCTCCGTCTTACTGCCTACCAATTCCACCATTGAAGCCTTTCACCGTGCTTCACTCCTCCGTGTCCGTACCCCCAATTTCCTCCTCCTTGATTCTCTCTGTAGCTCGAGCCAAACCCTCAGACGTCGAGACCACCTTCTTCGAGAGTGTCAATCCCGAAGAAGACGTGGTTTACGACCCCCCCGAAGTCCCGGAAGGCTTCGTTGCCCCTCCCTCCTTCGACGAAGGCCCATTGGAAAGCGAGGATGAAATTGCGGCCGCTTACGAGGAGCTCTATGGGCCGGCTTACAGTGGAGTCAGTGTTCTGGGAAACGACATTTATGTAATGGATTCTAAGATGAAAAAAGTGGGCGGATTCGGATCGAAGGCCAGGAAGGAGAAGGCGCGGGATGGGTTCGACGAGCGGGTTGTGCAAGTTCGTAGGGTGACTAAAGTGGTTAAAGGTGGGAAACAGTTGCATTTTAGGGCAATTGTTGTTGTGGGTGATAAAAAGGGGCAAGTGGGTGTTGGTGTTGGTAAAGCTAAAGAAGTCATCTCCGCTGTTCAGAAATCGGCCATCAATGCTCGCCGGAATATTGTCACTGTTCCCATGACCAAGTACCTAACATTTCCCCACAGGTTAGTCATTTCATTTTCCATTTACTAAGTAGAACTGTTACGCTTATTCTCGAATTTTGGGCTATGTTCTATTGTACTTCTTGGAATTTCTGTAGCAGCTCTATTGTTACACTTTGGTTTGCTGATATGGGAATGCGTTCAAAGATGGAATGTTCATTCCCCACCTTTGCAGGGTTTGAAGTATAAAAATATGGGATTTAAGGAAGACTAGAATTGGATTATTATTGTGATCTGTAGGAATGCTTTGAATCTAACCGCCTAAGCTTACCGTTAGCCGTTAGTCCATTATGTATCGTTAACCTCACGATTTTAAAATATGTCTACTAGGGAGACGTTTCCACACCCTTGTAAGGAATACTTCGTTCCCCTTCCAACCAATATGATTTGTTTTTAGTTAATACGAATTCTGTAGTCTGTATGCGGTTTGAACTTTGAATCATCATTTCAAGTTGGTCGCTGTGAAGGTATTTGCTGCTTGTGGCTGGCATTCTTTTGATGTTTTTTAGTTGTCTATTGCAGATGACTATGTTTTTAAGTATATTTCCCAGTTTTATGTAGAGCCTGCTGCAATTAGACTACAATTAGACTATAGAGAACTTGTCCTTCTCATCACAAGCTTCTCTTGGGAATCACTAACGACTCTCCACGATGGTATGATACTGTCCACTATGAGCATAAGCTCTCATGGCTTTGTTTTGGGCTTCCCCAAAATCCATGATCATTCCCGAAATTAGCTAATGTGAGACTCACTTCCAACCATCTTCAACGGCTTCCAGACTTCTTTTTATGACCAAAGGAATTAGAATATTATAAGCCTTGGACAAAATGTAACCGTCCAAGTTCACTGCTAGCAGATATTGTTTACTTTGCGTCTATTAGATGTAAACGTTAGCAGATTCCAGGAATTGAGAAGCCAAATCAAACTTTATAAAGGAAACCTCAAATTATGAATGGTGGTAAAGTACTGTACACATGTTGGGTTGGCGTGTGTTAGTGTAAATGTTGGGTAAGTAAAGTGTGGAAACTTGTAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTAAGACCTGCTTCTCCCGGTACTGGTGTGATTGCTGGTGGAGCAGTGAGAATCGTCCTCGAAATGGCGGGTGTCGAGAATGCGTTAGGGAAGCAACTAGGAAGTAATAATGCCCTCAACAATGCCAGAGCGACGGTGGTCGCCGTGATGAAGATGAAACAGTTTCGGGATGTCGCAAGGGAGCGTGGCATCCCAATGGAAGAGTTGTGGAAGTGAAGAGCAGGGAAAGGCTTCATTCCTTTGTTTCATTTTTTCCTTTGACTGCATCCATTCTTGTAACTCAATGTTGTAAAAATGGCACTCAGGCTTCATTCCTTTGTTTCTTATATCTGCAATTATCGGGATTATAGGTTGATTTGTGTTTGTTTATAAATTTTTAATATATTTGTATTGAATAATTATAAAGGGTAGGTAATAATTTTTTAA

mRNA sequence

TGTGGAGTCCATTTGGGGATAAGCCTCCATCTCTGAACCCACAGACCCTCCCTCTCAACCCTTCCTTCCTTTCTTCAATGGCTTCTTCGATTATCGTCCCCATTTCCTCTCTTTCCCTGCGTTCCTCTCCGTCTTACTGCCTACCAATTCCACCATTGAAGCCTTTCACCGTGCTTCACTCCTCCGTGTCCGTACCCCCAATTTCCTCCTCCTTGATTCTCTCTGTAGCTCGAGCCAAACCCTCAGACGTCGAGACCACCTTCTTCGAGAGTGTCAATCCCGAAGAAGACGTGGTTTACGACCCCCCCGAAGTCCCGGAAGGCTTCGTTGCCCCTCCCTCCTTCGACGAAGGCCCATTGGAAAGCGAGGATGAAATTGCGGCCGCTTACGAGGAGCTCTATGGGCCGGCTTACAGTGGAGTCAGTGTTCTGGGAAACGACATTTATGTAATGGATTCTAAGATGAAAAAAGTGGGCGGATTCGGATCGAAGGCCAGGAAGGAGAAGGCGCGGGATGGGTTCGACGAGCGGGTTGTGCAAGTTCGTAGGGTGACTAAAGTGGTTAAAGGTGGGAAACAGTTGCATTTTAGGGCAATTGTTGTTGTGGGTGATAAAAAGGGGCAAGTGGGTGTTGGTGTTGGTAAAGCTAAAGAAGTCATCTCCGCTGTTCAGAAATCGGCCATCAATGCTCGCCGGAATATTGTCACTGTTCCCATGACCAAGTACCTAACATTTCCCCACAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTAAGACCTGCTTCTCCCGGTACTGGTGTGATTGCTGGTGGAGCAGTGAGAATCGTCCTCGAAATGGCGGGTGTCGAGAATGCGTTAGGGAAGCAACTAGGAAGTAATAATGCCCTCAACAATGCCAGAGCGACGGTGGTCGCCGTGATGAAGATGAAACAGTTTCGGGATGTCGCAAGGGAGCGTGGCATCCCAATGGAAGAGTTGTGGAAGTGAAGAGCAGGGAAAGGCTTCATTCCTTTGTTTCATTTTTTCCTTTGACTGCATCCATTCTTGTAACTCAATGTTGTAAAAATGGCACTCAGGCTTCATTCCTTTGTTTCTTATATCTGCAATTATCGGGATTATAGGTTGATTTGTGTTTGTTTATAAATTTTTAATATATTTGTATTGAATAATTATAAAGGGTAGGTAATAATTTTTTAA

Coding sequence (CDS)

ATGGCTTCTTCGATTATCGTCCCCATTTCCTCTCTTTCCCTGCGTTCCTCTCCGTCTTACTGCCTACCAATTCCACCATTGAAGCCTTTCACCGTGCTTCACTCCTCCGTGTCCGTACCCCCAATTTCCTCCTCCTTGATTCTCTCTGTAGCTCGAGCCAAACCCTCAGACGTCGAGACCACCTTCTTCGAGAGTGTCAATCCCGAAGAAGACGTGGTTTACGACCCCCCCGAAGTCCCGGAAGGCTTCGTTGCCCCTCCCTCCTTCGACGAAGGCCCATTGGAAAGCGAGGATGAAATTGCGGCCGCTTACGAGGAGCTCTATGGGCCGGCTTACAGTGGAGTCAGTGTTCTGGGAAACGACATTTATGTAATGGATTCTAAGATGAAAAAAGTGGGCGGATTCGGATCGAAGGCCAGGAAGGAGAAGGCGCGGGATGGGTTCGACGAGCGGGTTGTGCAAGTTCGTAGGGTGACTAAAGTGGTTAAAGGTGGGAAACAGTTGCATTTTAGGGCAATTGTTGTTGTGGGTGATAAAAAGGGGCAAGTGGGTGTTGGTGTTGGTAAAGCTAAAGAAGTCATCTCCGCTGTTCAGAAATCGGCCATCAATGCTCGCCGGAATATTGTCACTGTTCCCATGACCAAGTACCTAACATTTCCCCACAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTAAGACCTGCTTCTCCCGGTACTGGTGTGATTGCTGGTGGAGCAGTGAGAATCGTCCTCGAAATGGCGGGTGTCGAGAATGCGTTAGGGAAGCAACTAGGAAGTAATAATGCCCTCAACAATGCCAGAGCGACGGTGGTCGCCGTGATGAAGATGAAACAGTTTCGGGATGTCGCAAGGGAGCGTGGCATCCCAATGGAAGAGTTGTGGAAGTGA

Protein sequence

MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVETTFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGNDIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPMEELWK

Homology

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BLAST of CmoCh03G012670 vs. ExPASy Swiss-Prot
Match: Q9ST69 (30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps5 PE=1 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 3.3e-108
Identity = 206/287 (71.78%), Postives = 237/287 (82.58%), Query Frame = 0


Query: 26  PLKPFTVLHSSVSVPPISSSLILSVARAKPS--------DVETTFFESVNPEEDVVYDPP 85
           PL P T    S+S       L LS  R+ P+        D++ TFFE  NP+E++ +DPP
Sbjct: 22  PLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPDEEITFDPP 81

Query: 86  EVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGNDIYVMDSKMKKVGGFGS 145
           E PEG++ P + DE P ESE+EIA AYEELYG AYSG S+LGND+Y MDSK+KK  GFGS
Sbjct: 82  EKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGS 141

Query: 146 KARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAV 205
           K++KEK RDGF+E VVQVRRVTKVVKGGK + FRAIVVVGDKKGQVGVGVGKAKEV+SAV
Sbjct: 142 KSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAV 201

Query: 206 QKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAG 265
           QK+A++ARRNI+TVPMTKYLTFPHR+E DYGAA+VMLRPA+PGTGVIAGGAVR VLEMAG
Sbjct: 202 QKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEMAG 261

Query: 266 VENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPMEELWK 305
           VENALGKQLGSNNALNNARAT+VAV  M+QF DVAR+RGIPMEELWK
Sbjct: 262 VENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIPMEELWK 308

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BLAST of CmoCh03G012670 vs. ExPASy Swiss-Prot
Match: P93014 (30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps5 PE=2 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 1.2e-105
Identity = 216/304 (71.05%), Postives = 243/304 (79.93%), Query Frame = 0


Query: 3   SSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVETTF 62
           +S +  +SSLSL +  S  +     K   V  SS      SS   L++ +A  +D ET F
Sbjct: 4   ASALSSLSSLSLHTRTSSLISSSSTKSI-VSFSSFLNRRFSS---LTLVKASSTDTETIF 63

Query: 63  FESVNPE--EDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 122
           FE   PE   +VV+DPP  PEGFV+PP FDEG  E+E+EIA A+EELYGPAYSG S+LG 
Sbjct: 64  FEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYSGESMLGK 123

Query: 123 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 182
           DIYVMDSK KK  G G K +K+K RDGF+ERVVQVRRVTKVVKGGKQL FRAIVVVGDK+
Sbjct: 124 DIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQ 183

Query: 183 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 242
           G VGVG  KAKEV++AVQKSAI+ARRNIV VPMTKY TFPHRSEGDYGAAKVMLRPASPG
Sbjct: 184 GNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLRPASPG 243

Query: 243 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 302
           TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AV +M+QFRDVA+ERGIPME
Sbjct: 244 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQMRQFRDVAQERGIPME 303

Query: 303 ELWK 305
           ELWK
Sbjct: 304 ELWK 303

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BLAST of CmoCh03G012670 vs. ExPASy Swiss-Prot
Match: Q1XDJ0 (30S ribosomal protein S5, chloroplastic OS=Pyropia yezoensis OX=2788 GN=rps5 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.6e-47
Identity = 97/167 (58.08%), Postives = 135/167 (80.84%), Query Frame = 0


Query: 138 KARKEKARD-GFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISA 197
           K  K K +D G++ERVVQV+RVTKVVKGGK+L FR I+V+G+++GQVGVGVGKA +VI A
Sbjct: 6   KQSKGKDKDSGWEERVVQVKRVTKVVKGGKKLSFRVILVIGNEQGQVGVGVGKASDVIGA 65

Query: 198 VQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMA 257
           V+K   +A++++VTVP+TK  + PH   G  GAAKV+LRP++PG+GVIAGG+VR VLE++
Sbjct: 66  VKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAKVILRPSAPGSGVIAGGSVRTVLELS 125

Query: 258 GVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPMEELW 304
           GV+N L KQLGSNN LNNARA +  + +++ F + A++RG+P+E L+
Sbjct: 126 GVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIESLY 172

[Close]

BLAST of CmoCh03G012670 vs. ExPASy Swiss-Prot
Match: P51298 (30S ribosomal protein S5, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps5 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 7.3e-47
Identity = 97/167 (58.08%), Postives = 135/167 (80.84%), Query Frame = 0


Query: 138 KARKEKARD-GFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISA 197
           K  K K +D G++ERVVQV+RVTKVVKGGK+L FR I+VVG+++GQVGVGVGKA +VI A
Sbjct: 6   KQGKSKEKDNGWEERVVQVKRVTKVVKGGKKLSFRVILVVGNEQGQVGVGVGKASDVIGA 65

Query: 198 VQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMA 257
           V+K   +A++++VTVP+TK  + PH   G  GAA+V+LRP++PG+GVIAGG+VR VLE++
Sbjct: 66  VKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAQVILRPSAPGSGVIAGGSVRTVLELS 125

Query: 258 GVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPMEELW 304
           GV+N L KQLGSNN LNNARA +  + +++ F + A++RG+P+E L+
Sbjct: 126 GVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIENLY 172

[Close]

BLAST of CmoCh03G012670 vs. ExPASy Swiss-Prot
Match: P59126 (30S ribosomal protein S5 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpsE PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-46
Identity = 97/164 (59.15%), Postives = 131/164 (79.88%), Query Frame = 0


Query: 140 RKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAVQK 199
           RK +    + ERVVQ+RRV+KVVKGGK+L FRAIVVVG+++GQVGVGVGKA +VI AV+K
Sbjct: 9   RKVEKETDWQERVVQIRRVSKVVKGGKKLSFRAIVVVGNERGQVGVGVGKAADVIGAVRK 68

Query: 200 SAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVE 259
              + +++++ VP+TK  + PH + G+ GAA+VM+RPA+PGTGVIAGG+VR VLE+AGV 
Sbjct: 69  GVADGKKHLIDVPITKSNSIPHPTFGEGGAARVMIRPAAPGTGVIAGGSVRTVLELAGVR 128

Query: 260 NALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPMEELW 304
           N L KQLGS+N LNNARA + A+  ++ F++VA ER IP+E L+
Sbjct: 129 NVLAKQLGSSNPLNNARAALEALAALRTFQEVAEEREIPIENLY 172

[Close]

BLAST of CmoCh03G012670 vs. ExPASy TrEMBL
Match: A0A6J1EDM2 (30S ribosomal protein S5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433236 PE=3 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 1.7e-160
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVET 60
           MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVET
Sbjct: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVET 60

Query: 61  TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120
           TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN
Sbjct: 61  TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120

Query: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180
           DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK
Sbjct: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180

Query: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240
           GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG
Sbjct: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240

Query: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300
           TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME
Sbjct: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300

Query: 301 ELWK 305
           ELWK
Sbjct: 301 ELWK 304

[Close]

BLAST of CmoCh03G012670 vs. ExPASy TrEMBL
Match: A0A6J1IU44 (30S ribosomal protein S5, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111478601 PE=3 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 2.1e-158
Identity = 298/304 (98.03%), Postives = 302/304 (99.34%), Query Frame = 0


Query: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVET 60
           MASSI+VPISSLSLRSSPSYCLPIPPLKPFTVLHS+VSVPPISSSLILS ARAKPSD++T
Sbjct: 1   MASSIVVPISSLSLRSSPSYCLPIPPLKPFTVLHSAVSVPPISSSLILSAARAKPSDIDT 60

Query: 61  TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120
            FFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN
Sbjct: 61  IFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120

Query: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180
           DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK
Sbjct: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180

Query: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240
           GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG
Sbjct: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240

Query: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300
           TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME
Sbjct: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300

Query: 301 ELWK 305
           ELWK
Sbjct: 301 ELWK 304

[Close]

BLAST of CmoCh03G012670 vs. ExPASy TrEMBL
Match: A0A6J1CLD7 (30S ribosomal protein S5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012511 PE=3 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 2.1e-142
Identity = 268/304 (88.16%), Postives = 292/304 (96.05%), Query Frame = 0


Query: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVET 60
           MASS +VPISSLSLRSSPS+ LPI PLKPFTVLHS++S+ PISSS IL+  RAK SD++T
Sbjct: 1   MASSTLVPISSLSLRSSPSHRLPILPLKPFTVLHSALSLAPISSSSILAPIRAKSSDIDT 60

Query: 61  TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120
           TFF++V PE+DVVYDPPEVPEGFVAPPSFDEGPLE+E+EIAAAYEE+YGPAYSGVSVLGN
Sbjct: 61  TFFDNVTPEDDVVYDPPEVPEGFVAPPSFDEGPLETEEEIAAAYEEIYGPAYSGVSVLGN 120

Query: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180
           DI+VMDSK+KKVGGFGSKA+K+K RDGF+ERVVQVRRVTKVVKGGKQLHFRAIVVVGDK+
Sbjct: 121 DIHVMDSKVKKVGGFGSKAKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQ 180

Query: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240
           GQVGVGVGKAKEVISAVQKSA+NARRNIVTVPMTKYLTFPHRS+GDYGAAKVMLRPASPG
Sbjct: 181 GQVGVGVGKAKEVISAVQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVMLRPASPG 240

Query: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300
           TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATV AV KMKQFR+VA+ERGIPME
Sbjct: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVAAVQKMKQFREVAQERGIPME 300

Query: 301 ELWK 305
           ELWK
Sbjct: 301 ELWK 304

[Close]

BLAST of CmoCh03G012670 vs. ExPASy TrEMBL
Match: A0A6J1EMC0 (30S ribosomal protein S5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433861 PE=3 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.9e-139
Identity = 266/304 (87.50%), Postives = 285/304 (93.75%), Query Frame = 0


Query: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVET 60
           MASS +VPIS   +RSSP + LPIP LKPF+ +HS++SV PISSS ILS  R K SD++T
Sbjct: 1   MASSTLVPISFHFVRSSPFHRLPIPQLKPFSGVHSALSVAPISSS-ILSATRVKSSDIDT 60

Query: 61  TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120
           TFF++ NP+ED VYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN
Sbjct: 61  TFFDTFNPDEDFVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120

Query: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180
           DIYVMDSKMKK+GGFGSK +K+K RDGF+ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK
Sbjct: 121 DIYVMDSKMKKLGGFGSKIKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180

Query: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240
           GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG
Sbjct: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240

Query: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300
           TGVIAGGAVRIVLEMAGVENALGKQ+GSNNALNNARATVVAV KMKQFR+VA+ERGIPME
Sbjct: 241 TGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGIPME 300

Query: 301 ELWK 305
           ELWK
Sbjct: 301 ELWK 303

[Close]

BLAST of CmoCh03G012670 vs. ExPASy TrEMBL
Match: A0A0A0KK69 (S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517420 PE=3 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.9e-139
Identity = 264/307 (85.99%), Postives = 287/307 (93.49%), Query Frame = 0


Query: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPI---SSSLILSVARAKPSD 60
           MASS +VPISS+SLRSSPS+ L IP  KPF +LHS+V + PI   SSS ILS  RAK SD
Sbjct: 47  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 106

Query: 61  VETTFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSV 120
           ++TTFF++VNP+ED+VYDPPEVPEGFV PPSFDEGP+E+E+EIAA YEE+YGPAYSGVSV
Sbjct: 107 IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 166

Query: 121 LGNDIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDIYVMDSK+KK GGFGSKA+K+K RDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 167 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 226

Query: 181 DKKGQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DK+GQVGVGVGKAKEVI+AVQKSA+NARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 227 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 286

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAV KMKQFRDVA+ERGI
Sbjct: 287 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 346

Query: 301 PMEELWK 305
           PMEELWK
Sbjct: 347 PMEELWK 353

[Close]

BLAST of CmoCh03G012670 vs. NCBI nr
Match: XP_022925981.1 (30S ribosomal protein S5, chloroplastic-like [Cucurbita moschata] >KAG7034598.1 30S ribosomal protein S5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 575.1 bits (1481), Expect = 3.6e-160
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVET 60
           MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVET
Sbjct: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVET 60

Query: 61  TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120
           TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN
Sbjct: 61  TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120

Query: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180
           DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK
Sbjct: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180

Query: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240
           GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG
Sbjct: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240

Query: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300
           TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME
Sbjct: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300

Query: 301 ELWK 305
           ELWK
Sbjct: 301 ELWK 304

[Close]

BLAST of CmoCh03G012670 vs. NCBI nr
Match: KAG6604453.1 (30S ribosomal protein S5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 572.0 bits (1473), Expect = 3.0e-159
Identity = 302/304 (99.34%), Postives = 303/304 (99.67%), Query Frame = 0


Query: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVET 60
           MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHS+VSVPPISSSLILSVARAKP DVET
Sbjct: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSAVSVPPISSSLILSVARAKPPDVET 60

Query: 61  TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120
           TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN
Sbjct: 61  TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120

Query: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180
           DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK
Sbjct: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180

Query: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240
           GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG
Sbjct: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240

Query: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300
           TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME
Sbjct: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300

Query: 301 ELWK 305
           ELWK
Sbjct: 301 ELWK 304

[Close]

BLAST of CmoCh03G012670 vs. NCBI nr
Match: XP_022978733.1 (30S ribosomal protein S5, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 568.2 bits (1463), Expect = 4.4e-158
Identity = 298/304 (98.03%), Postives = 302/304 (99.34%), Query Frame = 0


Query: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVET 60
           MASSI+VPISSLSLRSSPSYCLPIPPLKPFTVLHS+VSVPPISSSLILS ARAKPSD++T
Sbjct: 1   MASSIVVPISSLSLRSSPSYCLPIPPLKPFTVLHSAVSVPPISSSLILSAARAKPSDIDT 60

Query: 61  TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120
            FFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN
Sbjct: 61  IFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120

Query: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180
           DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK
Sbjct: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180

Query: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240
           GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG
Sbjct: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240

Query: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300
           TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME
Sbjct: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300

Query: 301 ELWK 305
           ELWK
Sbjct: 301 ELWK 304

[Close]

BLAST of CmoCh03G012670 vs. NCBI nr
Match: XP_023544602.1 (30S ribosomal protein S5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 567.0 bits (1460), Expect = 9.8e-158
Identity = 297/304 (97.70%), Postives = 302/304 (99.34%), Query Frame = 0


Query: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVET 60
           MASSIIVPISSLSLRSSPSYCLPIPPLKPFT+LHS+VSVPPISSS ILS ARAKPSD++T
Sbjct: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTLLHSAVSVPPISSSSILSAARAKPSDIDT 60

Query: 61  TFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120
           TFFES+NPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN
Sbjct: 61  TFFESINPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 120

Query: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180
           DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK
Sbjct: 121 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 180

Query: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240
           GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG
Sbjct: 181 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 240

Query: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300
           TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME
Sbjct: 241 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 300

Query: 301 ELWK 305
           ELWK
Sbjct: 301 ELWK 304

[Close]

BLAST of CmoCh03G012670 vs. NCBI nr
Match: XP_038883765.1 (30S ribosomal protein S5, chloroplastic [Benincasa hispida])

HSP 1 Score: 516.5 bits (1329), Expect = 1.5e-142
Identity = 273/307 (88.93%), Postives = 289/307 (94.14%), Query Frame = 0


Query: 1   MASSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPI---SSSLILSVARAKPSD 60
           MASS +VPISSLSLRSSPS+ LPIP  KPFTVLHS+VSVPPI   SSS ILS    K SD
Sbjct: 1   MASSTLVPISSLSLRSSPSHRLPIPLFKPFTVLHSAVSVPPISSSSSSFILSATPPKSSD 60

Query: 61  VETTFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSV 120
           ++TTFF++V P+EDVVYDPPEVPEGFV PPSFDEGP ESEDEIAAAYEE+YGPAYSGVSV
Sbjct: 61  IDTTFFDNVTPQEDVVYDPPEVPEGFVPPPSFDEGPPESEDEIAAAYEEIYGPAYSGVSV 120

Query: 121 LGNDIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDIYVMDSK+KKVGGFGSKA+K+K RDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 181 DKKGQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DK+GQVGVGVGKAKEVI+AVQKSA+NARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAV KMKQFRDVA+ERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 301 PMEELWK 305
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]

BLAST of CmoCh03G012670 vs. TAIR 10
Match: AT2G33800.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 384.4 bits (986), Expect = 8.4e-107
Identity = 216/304 (71.05%), Postives = 243/304 (79.93%), Query Frame = 0


Query: 3   SSIIVPISSLSLRSSPSYCLPIPPLKPFTVLHSSVSVPPISSSLILSVARAKPSDVETTF 62
           +S +  +SSLSL +  S  +     K   V  SS      SS   L++ +A  +D ET F
Sbjct: 4   ASALSSLSSLSLHTRTSSLISSSSTKSI-VSFSSFLNRRFSS---LTLVKASSTDTETIF 63

Query: 63  FESVNPE--EDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSVLGN 122
           FE   PE   +VV+DPP  PEGFV+PP FDEG  E+E+EIA A+EELYGPAYSG S+LG 
Sbjct: 64  FEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYSGESMLGK 123

Query: 123 DIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKK 182
           DIYVMDSK KK  G G K +K+K RDGF+ERVVQVRRVTKVVKGGKQL FRAIVVVGDK+
Sbjct: 124 DIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQ 183

Query: 183 GQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPG 242
           G VGVG  KAKEV++AVQKSAI+ARRNIV VPMTKY TFPHRSEGDYGAAKVMLRPASPG
Sbjct: 184 GNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLRPASPG 243

Query: 243 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGIPME 302
           TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AV +M+QFRDVA+ERGIPME
Sbjct: 244 TGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQMRQFRDVAQERGIPME 303

Query: 303 ELWK 305
           ELWK
Sbjct: 304 ELWK 303

[Close]

BLAST of CmoCh03G012670 vs. TAIR 10
Match: AT1G64880.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-15
Identity = 52/159 (32.70%), Postives = 86/159 (54.09%), Query Frame = 0


Query: 138 KARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAV 197
           K R+   R G+D  V+ V++V KV KGG+   + A++V G+ +G +G    KA+   SA+
Sbjct: 348 KKRQPLYRKGYDVHVIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAM 407

Query: 198 QKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAG 257
           QK+     +N+  V   +  T  H  +  Y   K+ L PA   TG+ AG  V+ +L +AG
Sbjct: 408 QKAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAG 467

Query: 258 VENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERG 297
            +N   K +GS N+ N  +A + A+  ++  +DV  + G
Sbjct: 468 FKNIKSKVIGSRNSYNTVKAVLKALNAVETPKDVQEKFG 506

[Close]

BLAST of CmoCh03G012670 vs. TAIR 10
Match: AT1G58983.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 68.9 bits (167), Expect = 7.8e-12
Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 150 ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRNIV 209
           + V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV +A++ + I A+ ++V
Sbjct: 97  DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156

Query: 210 TV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 269
            V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++  
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216

Query: 270 GKQLGSNNALNN-ARATVVAVMKMKQF 289
               GS   L N  +AT   + K   F
Sbjct: 217 TSSRGSTKTLGNFVKATFDCLQKTYGF 243

[Close]

BLAST of CmoCh03G012670 vs. TAIR 10
Match: AT1G59359.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 68.9 bits (167), Expect = 7.8e-12
Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 150 ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRNIV 209
           + V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV +A++ + I A+ ++V
Sbjct: 97  DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156

Query: 210 TV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 269
            V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++  
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216

Query: 270 GKQLGSNNALNN-ARATVVAVMKMKQF 289
               GS   L N  +AT   + K   F
Sbjct: 217 TSSRGSTKTLGNFVKATFDCLQKTYGF 243

[Close]

BLAST of CmoCh03G012670 vs. TAIR 10
Match: AT1G58380.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 68.9 bits (167), Expect = 7.8e-12
Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 150 ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVISAVQKSAINARRNIV 209
           + V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV +A++ + I A+ ++V
Sbjct: 97  DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156

Query: 210 TV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 269
            V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++  
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216

Query: 270 GKQLGSNNALNN-ARATVVAVMKMKQF 289
               GS   L N  +AT   + K   F
Sbjct: 217 TSSRGSTKTLGNFVKATFDCLQKTYGF 243

The following BLAST results are available for this feature:

BLAST of CmoCh03G012670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ST69	3.3e-108	71.78	30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps5 PE=...	[more]
P93014	1.2e-105	71.05	30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps5 ...	[more]
Q1XDJ0	5.6e-47	58.08	30S ribosomal protein S5, chloroplastic OS=Pyropia yezoensis OX=2788 GN=rps5 PE=...	[more]
P51298	7.3e-47	58.08	30S ribosomal protein S5, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps5 PE=...	[more]
P59126	1.2e-46	59.15	30S ribosomal protein S5 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722...	[more]

BLAST of CmoCh03G012670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDM2	1.7e-160	100.00	30S ribosomal protein S5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1IU44	2.1e-158	98.03	30S ribosomal protein S5, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1CLD7	2.1e-142	88.16	30S ribosomal protein S5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1EMC0	4.9e-139	87.50	30S ribosomal protein S5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A0A0KK69	4.9e-139	85.99	S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517420 PE=...	[more]

BLAST of CmoCh03G012670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925981.1	3.6e-160	100.00	30S ribosomal protein S5, chloroplastic-like [Cucurbita moschata] >KAG7034598.1 ...	[more]
KAG6604453.1	3.0e-159	99.34	30S ribosomal protein S5, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022978733.1	4.4e-158	98.03	30S ribosomal protein S5, chloroplastic-like [Cucurbita maxima]	[more]
XP_023544602.1	9.8e-158	97.70	30S ribosomal protein S5, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_038883765.1	1.5e-142	88.93	30S ribosomal protein S5, chloroplastic [Benincasa hispida]	[more]

BLAST of CmoCh03G012670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33800.1	8.4e-107	71.05	Ribosomal protein S5 family protein	[more]
AT1G64880.1	1.5e-15	32.70	Ribosomal protein S5 family protein	[more]
AT1G58983.1	7.8e-12	31.97	Ribosomal protein S5 family protein	[more]
AT1G59359.1	7.8e-12	31.97	Ribosomal protein S5 family protein	[more]
AT1G58380.1	7.8e-12	31.97	Ribosomal protein S5 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.20		coord: 138..209 e-value: 1.2E-23 score: 84.7
None	No IPR available	PANTHER	PTHR13718:SF94	30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC	coord: 50..304
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 145..213
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 215..303 e-value: 3.5E-27 score: 95.8
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 148..212 e-value: 3.5E-24 score: 84.6
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 148..211 score: 24.995371
IPR005712	Ribosomal protein S5, bacterial-type	TIGRFAM	TIGR01021	TIGR01021	coord: 147..301 e-value: 5.9E-59 score: 196.3
IPR005712	Ribosomal protein S5, bacterial-type	HAMAP	MF_01307_B	Ribosomal_S5_B	coord: 129..301 score: 32.518894
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 225..295 e-value: 4.1E-25 score: 87.0
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 50..304
IPR018192	Ribosomal protein S5, N-terminal, conserved site	PROSITE	PS00585	RIBOSOMAL_S5	coord: 165..197
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 218..296

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G012670.1	CmoCh03G012670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding