CmoCh03G012470 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G012470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA-binding protein S1FA-like
Location	Cmo_Chr03: 9592308 .. 9595965 (+)
RNA-Seq Expression	CmoCh03G012470
Synteny	CmoCh03G012470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGTACATCACAACAACAGGAACTCGTTGCGAAGGCCATCTCTCCGCTTCTGAATTTCAACCATGGAAGAAGATTTCGAGTTCGGTGACAAAGTCCCGCCGGCCGTCAACCGCATGGTACTCCAGAGCTCCCTTGAAAGTATCGCGATGTCATTTCTTTCTTGCTTGTTTGCCGCCTAATCTGAGATCCCTGTTAATGCAGCTTATCCTTTATTTTTCTCCAACGAAGTTTTGATTTGGACATGGCTCTGGGGGTTTACTTTGAGGTTAACGTATCATTGTCGATATTTTCTGTTCGATTTCGCTCTTGAGATCTGATTGTCTCTGCGGTCGACTAGCAAATAATGCAGTTGAATATTTTTTGGGATTTGCTCTTCGAGTACCCTTATAATGCAGTTGGATATTCCGTTTCTTCTTGTATACACACCTTGCTAGGTGATTCCCTTGTATGCTTAGTTTTTAGGTGGAATTTCTTTGTTCTGATTGTGTACAATTCGGTATCAAATATCTACTTTTCTGAAGAATGGTGCTGTTTTTGCAATGTTTTTAGGATGATGCTGATGCATGTGATCATTGTGTTATTTGGAGTCGGAAAAGATTTAAAAAAACTGCGCACCTTTTTTGCAATTTCCTGAAAATGGATGGAATTTTAAACTATAGGATGATACATGAATTTGTTAATTCGATCCTACATGTATGACCGAACTTAGAATTGGTGGATGGTTTAATTGTACCTATTCAGTTAATAAGAATAATAACAGTCCTGTTCAGTTCAGTTTTTCATATTGTTAGAGGATTTTCCGTGCATCTCTGATGTGGTATCCTCAGCATCTTTCGTAGCTAAGAATCAGATTAATGATTAGTTGGAGTACAAGGCTACAATTGATCTCCTTTTCGTGTTTACACATAACTTTGCTTGCATGAGATTGCTGAAGAAACCAGCCAGCTTCCTTTCTGGGGTGGTTCATGAGTTCCTTCTACAATTCTTGTTGTTGTGTATGTTCTGGTTCATGGTGACGAACAGTTAATATTGGCCTTGGTGCACAGGGGAACGTGATTGGAGATGCGGATGGAAGAGGATTCAATCCAGGACTGATTGTGCTGCTCGTAGTCGGCGGGCTGCTCTTGGCTTTTCTTGTTGTGAATTATGCTCTCTACATGTATGCGCAGAAGACCCTCCCACCAAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAAAAGGGAGAGACTAAAGCAAGGTATCTCTGCACCTGGCGAGTAGTAGTTAGTGCTAGCCTTTTCTCTTATGTGCTATATTCCTGTGCCTCACTTGGGGGAACTAACAAGTTCTTCCATTTCAGTGATTGAAGAGTAGTTTTGTTTATGTTGTTAAGTTGTTCAGAATCTGAACATTATAACCGGAAGTTCATAGTCCCTTGTATCCTTAGAGATGAGAAATGATAGTAAGAGAGTAGTTTATATGGTATATTTTGATCCAATGCTGTTTGCCTTGCCTTTCTTGCCAATCCTAGGATTTTCTGATTCACATTGGTTACCAGGAATATACACAAAATAGATTAAGGAGAAGGGAATAGTTGGTAACTTGGACATGCTCGCATCTAACAATATAGTTATAGTTCGATATGATAGAGTTCTTCTAGCGAAATTTGGTTCGGTTTCTTGTTTGATTCTTTATTTCTTTTTTAGCTCGTAAACGTGTAAATGTGCCTGGTTTAAAGATACAAGAAACAACACAATAATTTTTTAATATTCAAACTGAAGGAAACAAAGCTGGCCCTGGTGGCCAAGAATCTTCAACAAATTCTATACACAAAGGAACAAAATATTATCCACAAATAGGAAATGTCGTCTTATTCTGAAACCTTGTCAGAATATTTTTCCCTTTGAAAACTTAACATCCGAGACTCATCAGCCCCTAATACATTGCAGGTCAGCAGCAAGACGCCACTGCAAAAGAACATGGAAAGCAGGAGGAAGATGATCTCAGACTCCACGCCCCATGGACTGTTCTGCAGGTGGGATCATGACTAACACAGGACGAGCATTGAACCCTGGGTGAGGCATCCTCCGACGAAGTTCACGACCTTCCTGGCAAAGTGCACAGGTGTGACAGAAGACATGAGTTGCAAAGTCACAGACAGATTCACAGTGCTCACGCTGAACTTCGTCTTCAACACAGAGTCCGCAACAGCCACATGACCTATGAAGTGCCTCGCAGTTACCCTGCTCGTCATGAAACAAGGTAATGTATAAACTTTCCCATCAATTGAATTGAATGTCAAGTCATGCATTCATTTGCAGATATTGAGAATCAAGAATGGTAAAGGAGAAGGTTCAACTTGCCTCCAGATTGAACATTCGGCGGATAGCTGTGCGGGTAGGAAATGTAAACCATGGAGCAAGGCAGTTCCAACCAAAGAAAGAGGTTCCAATTAAGTAGAGACCAGAATATGACATGCAATGGTTTGCAAAAGTCCCAGGAGTAGACCCAAGTCTCTCTGCGTTGCTTCCATACAGCATACAAGGAGCCACACTTCCAATAAGACCTACAAACACTCATTGTAAGTTGCTTTCCCTTATTTTCTCCTAATTTCATTTCACTTTCTTCCCTAATTTTACCTCTTCAAGTTGAAGCAAGAAGTAAAACCCTAGTAGTCAATAGAAATCCCTCCCTAAAGAAGTTTATAGCAATACCCTCCTATAAATGTGTTGAATTCCTCCAGCCCCTCCTCCCCGTGAAAATAAGGATTCCTTTTCTTATTGTAATCCAGGCCCCATCGAGACCCCAAGGATCAGAATGGGTATTTATTGGAAGATTAAGGATTAGGGAACTTGTTTATTCAAACCAATTAAAAGTGATAAGAATGGTATTAGAGATCCAAGAATTCTGCATAGCCCAGATCTTATCTGAAACTCTATTTGAAGAAACAACAGAATACTCCTGCCTAAAGAAGTGCTAGCATATTAAGATCATGGTGGATAAGGCACCCTATCTAAAGTAAGAAGAAGAATATTTTGGTAGGAATAAGCTACAAACCCAAAAATCAGGGAAAACGAATCACGTATCCCCAAAGCCTAACCTTTCAGCAAAAACTCAATTCAAATGAAGAAAACGAATCGACTTACAAACTTCTAGATCGCTACTGCAGAACTCATCGTGGCGACCAAGACAAGCGCAGAGACCAGTTTCCCATTGGGCCCGACCTACCGGCTCTCCCATCACACTACCATGAATCGGGAGCCCATCGGCAGTCCACCCATAATCACAGCCATCGCCGCCGTTCTCTTCCTCCGCAAATTTCCGGACAGGAGGCGGCGGAGGTACTGCATCGGCCCTATCCCCCGTGGAGATGCGATGTGTATCCTTCTCATCTGCTTTTTCAACGACCTTGCCGAGAAGTGGGCTTGATTCCTCGAGGTTTTCGCCGTTGGCCATGATGAATTAGCAGAGAAAAGAAGAAACCCAGATCAAAAATTCAAAATCTAATGCGAAGAAATGGAGGAGACAAGGTCAGAAACTTAAAGGAAGCGCGATTCTTCCAAATTTTCTTCACGTACGGGAGAAGGAAAACCATGTGTTCGCGGCTCCGCAGCGTTTTATTAGGATGCGAAAGCTTCCACCACTGGTTTTAATTGCACCTTAGCTATAATTAGG

mRNA sequence

GTTGGTACATCACAACAACAGGAACTCGTTGCGAAGGCCATCTCTCCGCTTCTGAATTTCAACCATGGAAGAAGATTTCGAGTTCGGTGACAAAGTCCCGCCGGCCGTCAACCGCATGGGGAACGTGATTGGAGATGCGGATGGAAGAGGATTCAATCCAGGACTGATTGTGCTGCTCGTAGTCGGCGGGCTGCTCTTGGCTTTTCTTGTTGTGAATTATGCTCTCTACATGTATGCGCAGAAGACCCTCCCACCAAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAAAAGGGAGAGACTAAAGCAAGGTCAGCAGCAAGACGCCACTGCAAAAGAACATGGAAAGCAGGAGGAAGATGATCTCAGACTCCACGCCCCATGGACTGTTCTGCAGATATTGAGAATCAAGAATGGTAAAGGAGAAGGTTCAACTTGCCTCCAGATTGAACATTCGGCGGATAGCTGTGCGGGTAGGAAATGAGTAGACCCAAGTCTCTCTGCGTTGCTTCCATACAGCATACAAGGAGCCACACTTCCAATAAGACCTACAAACACTCATTGCCCCATCGAGACCCCAAGGATCAGAATGGGTATTTATTGGAAGATTAAGGATTAGGGAACTTGTTTATTCAAACCAATTAAAAGTGATAAGAATGGTATTAGAGATCCAAGAATTCTGCATAGCCCAGATCTTATCTGAAACTCTATTTGAAGAAACAACAGAATACTCCTGCCTAAAGAAGTGCTAGCATATTAAGATCATGGTGGATAAGGCACCCTATCTAAAGTAAGAAGAAGAATATTTTGGTAGGAATAAGCTACAAACCCAAAAATCAGGGAAAACGAATCACGTATCCCCAAAGCCTAACCTTTCAGCAAAAACTCAATTCAAATGAAGAAAACGAATCGACTTACAAACTTCTAGATCGCTACTGCAGAACTCATCGTGGCGACCAAGACAAGCGCAGAGACCAGTTTCCCATTGGGCCCGACCTACCGGCTCTCCCATCACACTACCATGAATCGGGAGCCCATCGGCAGTCCACCCATAATCACAGCCATCGCCGCCGTTCTCTTCCTCCGCAAATTTCCGGACAGGAGGCGGCGGAGGTACTGCATCGGCCCTATCCCCCGTGGAGATGCGATGTGTATCCTTCTCATCTGCTTTTTCAACGACCTTGCCGAGAAGTGGGCTTGATTCCTCGAGGTTTTCGCCGTTGGCCATGATGAATTAGCAGAGAAAAGAAGAAACCCAGATCAAAAATTCAAAATCTAATGCGAAGAAATGGAGGAGACAAGGTCAGAAACTTAAAGGAAGCGCGATTCTTCCAAATTTTCTTCACGTACGGGAGAAGGAAAACCATGTGTTCGCGGCTCCGCAGCGTTTTATTAGGATGCGAAAGCTTCCACCACTGGTTTTAATTGCACCTTAGCTATAATTAGG

Coding sequence (CDS)

ATGGAAGAAGATTTCGAGTTCGGTGACAAAGTCCCGCCGGCCGTCAACCGCATGGGGAACGTGATTGGAGATGCGGATGGAAGAGGATTCAATCCAGGACTGATTGTGCTGCTCGTAGTCGGCGGGCTGCTCTTGGCTTTTCTTGTTGTGAATTATGCTCTCTACATGTATGCGCAGAAGACCCTCCCACCAAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAAAAGGGAGAGACTAAAGCAAGGTCAGCAGCAAGACGCCACTGCAAAAGAACATGGAAAGCAGGAGGAAGATGATCTCAGACTCCACGCCCCATGGACTGTTCTGCAGATATTGAGAATCAAGAATGGTAAAGGAGAAGGTTCAACTTGCCTCCAGATTGAACATTCGGCGGATAGCTGTGCGGGTAGGAAATGA

Protein sequence

MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGQQQDATAKEHGKQEEDDLRLHAPWTVLQILRIKNGKGEGSTCLQIEHSADSCAGRK

Homology

[Close]

BLAST of CmoCh03G012470 vs. ExPASy Swiss-Prot
Match: P42552 (DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-17
Identity = 46/62 (74.19%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 22 IGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPKKKKPVSKKKMKRERLK 81
          + + + +G NPGLIVLLV+GGLLL FLV N+ LY YAQK LPPKKKKP+SKKKMKRERLK
Sbjct: 3  VNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLK 62

Query: 82 QG 84
          QG
Sbjct: 63 QG 64

[Close]

BLAST of CmoCh03G012470 vs. ExPASy Swiss-Prot
Match: P42551 (DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-16
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 25 ADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQG 84
          A+ +G NPGLIVLLVVGG LL FL+ NY LY+YAQK LPP+KKKPVSKKK+KRE+LKQG
Sbjct: 12 AEAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQG 70

[Close]

BLAST of CmoCh03G012470 vs. ExPASy Swiss-Prot
Match: Q42337 (DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-16
Identity = 42/58 (72.41%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 26 DGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQG 84
          + +G NPGLIVLLV+GGLL+ FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQG
Sbjct: 13 EAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQG 70

[Close]

BLAST of CmoCh03G012470 vs. ExPASy Swiss-Prot
Match: Q93VI0 (DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.0e-16
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 23 GDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQ 82
          G  + +G NPGLIVLLV+GGLLL FLV N+ LY YAQK LPP+KKKPVSKKKMK+E++KQ
Sbjct: 7  GKIESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQ 66

Query: 83 GQQ 86
          G Q
Sbjct: 67 GVQ 69

[Close]

BLAST of CmoCh03G012470 vs. ExPASy Swiss-Prot
Match: P42553 (DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA1 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.8e-16
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 16 NRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPKKKKPVSKKKM 75
          ++  N+I +   +G NPG IVLLVV  LL+ F V NYALYMYAQKTLPP+KKKPVSKKK+
Sbjct: 3  DQSNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKL 62

Query: 76 KRERLKQG 84
          KRE+LKQG
Sbjct: 63 KREKLKQG 70

[Close]

BLAST of CmoCh03G012470 vs. ExPASy TrEMBL
Match: A0A6J1EDS2 (DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111433279 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.1e-36
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK
Sbjct: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQG 84
          TLPPKKKKPVSKKKMKRERLKQG
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQG 83

[Close]

BLAST of CmoCh03G012470 vs. ExPASy TrEMBL
Match: A0A6J1ISG2 (DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111478884 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-33
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          MEEDFE G+KVPPAVNRMGNVIGDADGRGFNPGLIV LVVGGLLLAFLVVNYA YMYAQK
Sbjct: 1  MEEDFELGEKVPPAVNRMGNVIGDADGRGFNPGLIVRLVVGGLLLAFLVVNYAFYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQG 84
          TLPPKKKKPVSKKKMKRERLKQG
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQG 83

[Close]

BLAST of CmoCh03G012470 vs. ExPASy TrEMBL
Match: A0A0A0KEM3 (DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_6G445000 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.0e-31
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          ME+DF+FGDKVPPAVNRMGNVI D + RGFNPGLIVLLVVGGLL AFLV NYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQG 84
          TLPPKKKKPVSKKKMKRERLKQG
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQG 83

[Close]

BLAST of CmoCh03G012470 vs. ExPASy TrEMBL
Match: A0A6J1HDT2 (DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111463054 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.5e-31
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          ME+DF+FGDKVPPAVNRMGNVI +AD RGFNPGLIVLLVVGGLLLAFL  NYALY+YAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQG 84
          TLPPK+KKPVSKKKMKRERLKQG
Sbjct: 61 TLPPKRKKPVSKKKMKRERLKQG 83

[Close]

BLAST of CmoCh03G012470 vs. ExPASy TrEMBL
Match: A0A5A7TZ88 (DNA-binding protein S1FA-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00690 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-30
Identity = 74/83 (89.16%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          ME+DF+FGDKVPPAVNRM NVI D + RGFNPGLIVLLVVGGLL AFLV NYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMRNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQG 84
          TLPPKKKKPVSKKKMKRERLKQG
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQG 83

[Close]

BLAST of CmoCh03G012470 vs. NCBI nr
Match: KAG7034580.1 (hypothetical protein SDJN02_04310 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.2 bits (513), Expect = 2.9e-48
Identity = 112/150 (74.67%), Postives = 119/150 (79.33%), Query Frame = 0


Query: 1   MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
           MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY+   +
Sbjct: 1   MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI---R 60

Query: 61  TLPPKKKKPVSKKKMKRER-------------LKQGQQQDATAKEHGKQEEDDLRLHAPW 120
               K++    ++  K E              +   QQQDATAKEHGKQEEDDLRLHAPW
Sbjct: 61  PSHHKRRTSFQEEDEKGETKARYLCTWRNLNIITGSQQQDATAKEHGKQEEDDLRLHAPW 120

Query: 121 TVLQILRIKNGKGEGSTCLQIEHSADSCAG 138
           TVLQILRIKNGKGEGSTCLQIEHSADSCAG
Sbjct: 121 TVLQILRIKNGKGEGSTCLQIEHSADSCAG 147

[Close]

BLAST of CmoCh03G012470 vs. NCBI nr
Match: XP_022926041.1 (DNA-binding protein S1FA-like [Cucurbita moschata])

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-35
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK
Sbjct: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQG 84
          TLPPKKKKPVSKKKMKRERLKQG
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQG 83

[Close]

BLAST of CmoCh03G012470 vs. NCBI nr
Match: XP_022979165.1 (DNA-binding protein S1FA-like [Cucurbita maxima])

HSP 1 Score: 152.5 bits (384), Expect = 2.6e-33
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          MEEDFE G+KVPPAVNRMGNVIGDADGRGFNPGLIV LVVGGLLLAFLVVNYA YMYAQK
Sbjct: 1  MEEDFELGEKVPPAVNRMGNVIGDADGRGFNPGLIVRLVVGGLLLAFLVVNYAFYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQG 84
          TLPPKKKKPVSKKKMKRERLKQG
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQG 83

[Close]

BLAST of CmoCh03G012470 vs. NCBI nr
Match: XP_038881351.1 (DNA-binding protein S1FA-like [Benincasa hispida])

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-32
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          ME+DF+FGDKVPPAVNRMGNVI DAD RGFNPGLIVLLVVGGLLLAFL  NYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDADARGFNPGLIVLLVVGGLLLAFLAGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQG 84
          TLPPKKKKPVSKKKMKRERLKQG
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQG 83

[Close]

BLAST of CmoCh03G012470 vs. NCBI nr
Match: XP_004143239.1 (DNA-binding protein S1FA [Cucumis sativus] >KGN48135.1 hypothetical protein Csa_003029 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 4.2e-31
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQK 60
          ME+DF+FGDKVPPAVNRMGNVI D + RGFNPGLIVLLVVGGLL AFLV NYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQG 84
          TLPPKKKKPVSKKKMKRERLKQG
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQG 83

[Close]

BLAST of CmoCh03G012470 vs. TAIR 10
Match: AT3G53370.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 87.8 bits (216), Expect = 7.4e-18
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 25 ADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQG 84
          A+ +G NPGLIVLLVVGG LL FL+ NY LY+YAQK LPP+KKKPVSKKK+KRE+LKQG
Sbjct: 12 AEAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQG 70

[Close]

BLAST of CmoCh03G012470 vs. TAIR 10
Match: AT2G37120.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-17
Identity = 42/58 (72.41%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 26 DGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQG 84
          + +G NPGLIVLLV+GGLL+ FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQG
Sbjct: 13 EAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQG 70

[Close]

BLAST of CmoCh03G012470 vs. TAIR 10
Match: AT3G09735.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-17
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 23 GDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQ 82
          G  + +G NPGLIVLLV+GGLLL FLV N+ LY YAQK LPP+KKKPVSKKKMK+E++KQ
Sbjct: 7  GKIESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQ 66

Query: 83 GQQ 86
          G Q
Sbjct: 67 GVQ 69

[Close]

BLAST of CmoCh03G012470 vs. TAIR 10
Match: AT3G53370.2 (S1FA-like DNA-binding protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.6e-04
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 57 YAQKTLPPKKKKPVSKKKMKRERLKQG 84
          +A K LPP+KKKPVSKKK+KRE+LKQG
Sbjct: 6  FAGKNLPPRKKKPVSKKKLKREKLKQG 32

The following BLAST results are available for this feature:

BLAST of CmoCh03G012470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42552	2.1e-17	74.19	DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1	[more]
P42551	1.0e-16	76.27	DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2	[more]
Q42337	1.8e-16	72.41	DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2	[more]
Q93VI0	4.0e-16	71.43	DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1	[more]
P42553	6.8e-16	67.65	DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA1 PE=3...	[more]

BLAST of CmoCh03G012470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDS2	6.1e-36	100.00	DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111433279 PE=3...	[more]
A0A6J1ISG2	1.3e-33	95.18	DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111478884 PE=3 S...	[more]
A0A0A0KEM3	2.0e-31	90.36	DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_6G445000 PE=3 SV=1	[more]
A0A6J1HDT2	4.5e-31	89.16	DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111463054 PE=3...	[more]
A0A5A7TZ88	1.7e-30	89.16	DNA-binding protein S1FA-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of CmoCh03G012470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034580.1	2.9e-48	74.67	hypothetical protein SDJN02_04310 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022926041.1	1.3e-35	100.00	DNA-binding protein S1FA-like [Cucurbita moschata]	[more]
XP_022979165.1	2.6e-33	95.18	DNA-binding protein S1FA-like [Cucurbita maxima]	[more]
XP_038881351.1	5.0e-32	92.77	DNA-binding protein S1FA-like [Benincasa hispida]	[more]
XP_004143239.1	4.2e-31	90.36	DNA-binding protein S1FA [Cucumis sativus] >KGN48135.1 hypothetical protein Csa_...	[more]

BLAST of CmoCh03G012470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53370.1	7.4e-18	76.27	S1FA-like DNA-binding protein	[more]
AT2G37120.1	1.3e-17	72.41	S1FA-like DNA-binding protein	[more]
AT3G09735.1	2.8e-17	71.43	S1FA-like DNA-binding protein	[more]
AT3G53370.2	3.6e-04	77.78	S1FA-like DNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006779	DNA binding protein S1FA	PFAM	PF04689	S1FA	coord: 25..85 e-value: 2.1E-35 score: 120.7
IPR006779	DNA binding protein S1FA	PANTHER	PTHR35298	DNA-BINDING PROTEIN S1FA2	coord: 3..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..79
None	No IPR available	PANTHER	PTHR35298:SF9	DNA-BINDING PROTEIN S1FA1-RELATED	coord: 3..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G012470.1	CmoCh03G012470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding