CmoCh03G011670 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G011670
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPDR8
LocationCmo_Chr03: 9177916 .. 9179937 (-)
RNA-Seq ExpressionCmoCh03G011670
SyntenyCmoCh03G011670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGGAATCAATGGAAGTGCATTCTTGGTGGGAATCAATGAAATATGCAACTTCACTTACTGTTCTTGGAACCATGAATCCGGAGAATAAGTTCCAGAAGCTGAGGAAGAAGGACATGGCTATGGCTGCTATTTGGGGGCCTGGAGTTAGTGCAACAATCATCATCCCGTACATTGTGAAGTAGACAAAGCACATCAAGATGAAGTAGTAGAACCATAGGAAGTTTGTTGCCTTCCACTCGAATCCCATCATGGAGAACAGTAGTAGAGAGTAAATTATTGTTTGAATTGCGTTGTAGATTGCTTCTATGGACACCTGCACAACAAGGGAGTTCCACATTGTCAGCTTAAATGGTTAACGTCAGCCTCACGATTTTAAAACGTGTCTAGGGAGAGGTTTCCACACCCTTGTAAGGAATGCTTCGTTCCCCTCTCCAACCGATGTGGGATATGAACAGAGTTGTTTGTTACCTGAGAGAATGCATAGGGGAGTGGAGAGTACATGCCAGCAGCTCTTTCACGGTAGAAAACTGTTCTCTCTATGGTTATCACTGGCTGTACTGCAGCGGCATTACTAGCTCCCAAGAAGAGAATAGCAGCATACATAGCACCCAAGAAGTTCCTCAGGTCCTGTTCTTCATCACTGTTGAATTGAGCAATAAATGTGAATGAAACTTGTTGAAGTTCAATAAATACAAAATGTGAGGATGGGTTTTGATCAATACGTTTTTTCTCCTTTGTTCCAGAAGATAAGCCCAAACATAAGTCCAATAATGGTTGTCATGAAGAACCGCACCGCGTTGTATCGAGGGTTCCTCCAGTATGACCGATACCATTTCCAGAAACAAGCTTTGTACTGAACATTGAATGACTGAGAATACTTGGTTGGGAAGTGCAGGTCTTGAGATCCGGGAGCTGGTGTACTCAGTTCTTGGATAAGTTCTTGGTTTCTCCTGAAAAATTTATAGAAACTTATGAGACTCCGGTTAGGAATCACGACTCTCCACAATGGTATCATATTGTCCACTTTGAGCATAAGCTCTCGTAGTTTTGCTTTGGGTTTTCCCGAAAGGCCTCAACTAATGGAGATGTAAGGAAGAGATGAGTCAAAGAATTGAGATAAAAGTGAACGTACTGATAAAGCGCAGAGTTGGCGTAAATTTCTGCAAAATCCACATCAAGTTGAGTCTCAACAGATGAAGCTGTGACATCAAGCATCCATGTAGCAGGATTGTAGCCATCTTTAATCTTTGGAACCCCTGGAACACTCTGTTGCAGTTCAAAGGAGCGTTAGTAAAAGTATATGTAACGGCCAAAGCACATGTTTTTAAAACGCGTCGGCTAGGGAGAGGTCTTCACACCCTTATAAAGGGGGTGTTTCGTTCTCCTCCCCAACTGACGTGGGATCTCTTAGTTGACTAATAAATTCTTACTTCAAAATACTCGACGAGCCTGTGAGAATGGTGACCAAGAGATCCAGCATAAATGACTTGTCCACCTCGTTTCATCAGCAGCAGCTGTTTCAAGATCAAAATATAAGCTCATTTCACTTTTGAAAAGAAATATAAGCTCATATCAATGTCATACCTCATCAAAAGATTCAAAAATATCAATGCTGGGCTGGTGAATTGTGCAGACCACAGTTCTTCCAGTATCGACAGTGTTTCGCACCGTCCGCATGACAATGGCTGCAGCTCTAGCATCAAGACCAGATGTTGGTTCATCCATGAAGATGATAGATGGATTAGCCACCAGCTCTACAGCTATAGTTAACCTCTTCCTTTGTTCTGTTGAAAGACCATCTATCCCAGGAAGTCCAACTAAAGCATCTCTCAGAGAGTTAAGTTCCACCAGTTCCATAACTTCTTCCACAAACATCTACAACAAAGACAGACAGAAATTTAAGGATAACAAACTTCAGGCACATCAAACTGTTTTGTTCTCCAAAAATTCAGGCAAATGAAACCTTTCTGGTAGCTGTGTTGACACTTGAAGGAAGGCGGAGCCATGCTGAATAG

mRNA sequence

ATGGAAAAGGAATCAATGGAAGTGCATTCTTGGTGGGAATCAATGAAATATGCAACTTCACTTACTGTTCTTGGAACCATGAATCCGGAGAATAAGTTCCAGAAGCTGAGGAAGAAGGACATGGCTATGGCTGCTATTTGGGGGCCTGGAGTTAGTGCAACAATCATCATCCCCGGCATTACTAGCTCCCAAGAAGAGAATAGCAGCATACATAGCACCCAAGAAGTTCCTCAGACCACAGTTCTTCCAGTATCGACAGTGTTTCGCACCGTCCGCATGACAATGGCTGCAGCTCTAGCATCAAGACCAGATGTTGGTTCATCCATGAAGATGATAGATGGATTAGCCACCAGCTCTACAGCTATAGTTAACCTCTTCCTTTGTTCTGTTGAAAGACCATCTATCCCAGGAAGTCCAACTAAAGCATCTCTCAGAGAGTTAAGTTCCACCAGTTCCATAACTTCTTCCACAAACATCTACAACAAAGACAGACAGAAATTTAAGGATAACAAACTTCAGGCACATCAAACTGCAAATGAAACCTTTCTGGTAGCTGTGTTGACACTTGAAGGAAGGCGGAGCCATGCTGAATAG

Coding sequence (CDS)

ATGGAAAAGGAATCAATGGAAGTGCATTCTTGGTGGGAATCAATGAAATATGCAACTTCACTTACTGTTCTTGGAACCATGAATCCGGAGAATAAGTTCCAGAAGCTGAGGAAGAAGGACATGGCTATGGCTGCTATTTGGGGGCCTGGAGTTAGTGCAACAATCATCATCCCCGGCATTACTAGCTCCCAAGAAGAGAATAGCAGCATACATAGCACCCAAGAAGTTCCTCAGACCACAGTTCTTCCAGTATCGACAGTGTTTCGCACCGTCCGCATGACAATGGCTGCAGCTCTAGCATCAAGACCAGATGTTGGTTCATCCATGAAGATGATAGATGGATTAGCCACCAGCTCTACAGCTATAGTTAACCTCTTCCTTTGTTCTGTTGAAAGACCATCTATCCCAGGAAGTCCAACTAAAGCATCTCTCAGAGAGTTAAGTTCCACCAGTTCCATAACTTCTTCCACAAACATCTACAACAAAGACAGACAGAAATTTAAGGATAACAAACTTCAGGCACATCAAACTGCAAATGAAACCTTTCTGGTAGCTGTGTTGACACTTGAAGGAAGGCGGAGCCATGCTGAATAG

Protein sequence

MEKESMEVHSWWESMKYATSLTVLGTMNPENKFQKLRKKDMAMAAIWGPGVSATIIIPGITSSQEENSSIHSTQEVPQTTVLPVSTVFRTVRMTMAAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVERPSIPGSPTKASLRELSSTSSITSSTNIYNKDRQKFKDNKLQAHQTANETFLVAVLTLEGRRSHAE
Homology
[Close]
BLAST of CmoCh03G011670 vs. ExPASy TrEMBL
Match: A0A0A9IW72 (PDR8 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.3e-27
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 0 

Query: 76  VPQTTVLPVSTVFRTVRMTMAAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVERPSI 135
           + QTTV PVSTVFRTV MT+AAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVE P I
Sbjct: 8   IVQTTVRPVSTVFRTVLMTIAAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVESPVI 67

Query: 136 PGSPTKASLRELSSTSSITSSTN 159
           PGSPTKAS R LSSTSSITSSTN
Sbjct: 68  PGSPTKASFRLLSSTSSITSSTN 90

[Close]
BLAST of CmoCh03G011670 vs. ExPASy TrEMBL
Match: A0A0A9J2I1 (Similar to PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8) OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-25
Identity = 72/83 (86.75%), Postives = 74/83 (89.16%), Query Frame = 0 

Query: 76  VPQTTVLPVSTVFRTVRMTMAAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVERPSI 135
           + QTTV PVSTVFRTV MT+AAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVE P I
Sbjct: 8   IVQTTVRPVSTVFRTVLMTIAAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVESPVI 67

Query: 136 PGSPTKASLRELSSTSSITSSTN 159
           PG PTKAS R  SSTSSITSSTN
Sbjct: 68  PGRPTKASFRLSSSTSSITSSTN 90

[Close]
BLAST of CmoCh03G011670 vs. ExPASy TrEMBL
Match: A0A0A9JC22 (Similar to PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8) OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-24
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0 

Query: 76  VPQTTVLPVSTVFRTVRMTMAAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVERPSI 135
           + QTTV PVSTVFRTV MT+AAALASRPDVGSSMKMI+GLATSSTAIV+LFLCSV+ P I
Sbjct: 8   IVQTTVRPVSTVFRTVLMTIAAALASRPDVGSSMKMIEGLATSSTAIVSLFLCSVDSPVI 67

Query: 136 PGSPTKASLRELSSTSSITSSTN 159
           PG PTKAS R  SSTSSITSSTN
Sbjct: 68  PGRPTKASFRLSSSTSSITSSTN 90

[Close]
BLAST of CmoCh03G011670 vs. ExPASy TrEMBL
Match: A0A7N0SXS2 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 0 

Query: 78  QTTVLPVSTVFRTVRMTMAAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVERPSIPG 137
           QTTVLPVSTV RTVR+TMAAALAS PDVGSSMK+++G ATSSTAIV  FLCSV+RP +PG
Sbjct: 3   QTTVLPVSTVLRTVRITMAAALASSPDVGSSMKIMEGFATSSTAIVRRFLCSVDRPELPG 62

Query: 138 SPTKASLRELSSTSSITSSTN 159
            PTKA LRE SST+ ITSSTN
Sbjct: 63  RPTKAFLRESSSTNLITSSTN 83

[Close]
BLAST of CmoCh03G011670 vs. ExPASy TrEMBL
Match: A0A7C9DQV0 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.4e-22
Identity = 68/99 (68.69%), Postives = 77/99 (77.78%), Query Frame = 0 

Query: 78  QTTVLPVSTVFRTVRMTMAAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVERPSIPG 137
           QTTVLPV TVF TV MTMAAALAS P+VGSS+ MI+G ATSSTAIV+LF CSVERP  PG
Sbjct: 3   QTTVLPVLTVFLTVLMTMAAALASSPEVGSSINMIEGFATSSTAIVSLFRCSVERPFTPG 62

Query: 138 SPTKASLRELSSTSSITSSTNIYNKDRQKFKDNKLQAHQ 177
           SPT ASLR +SSTSS+ SSTNI+        DN+ QA +
Sbjct: 63  SPTSASLRLVSSTSSMISSTNIFLVSALTSDDNRSQAEK 101

[Close]
BLAST of CmoCh03G011670 vs. NCBI nr
Match: KAF7817222.1 (Coatomer subunit beta-1 [Senna tora])

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-22
Identity = 71/100 (71.00%), Postives = 78/100 (78.00%), Query Frame = 0 

Query: 61  TSSQEENSSIHSTQEVPQTTVLPVSTVFRTVRMTMAAALASRPDVGSSMKMIDGLATSST 120
           TSS   N SI     + QTTV PVSTVF TV +T+AAALASRP+VGSSM +IDG ATSST
Sbjct: 11  TSSNASNISILGWW-IVQTTVRPVSTVFLTVLITIAAALASRPEVGSSMNIIDGFATSST 70

Query: 121 AIVNLFLCSVERPSIPGSPTKASLRELSSTSSITSSTNIY 161
           AIV+L  CSVE P  PG+PT ASL ELSSTSSITSSTNIY
Sbjct: 71  AIVSLLRCSVESPVSPGNPTSASLNELSSTSSITSSTNIY 109

[Close]
BLAST of CmoCh03G011670 vs. NCBI nr
Match: PKU67855.1 (hypothetical protein MA16_Dca019381 [Dendrobium catenatum])

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-21
Identity = 63/82 (76.83%), Postives = 70/82 (85.37%), Query Frame = 0 

Query: 79  TTVLPVSTVFRTVRMTMAAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVERPSIPGS 138
           TTV PV TVF TVR+T+AAALASRPDVGSSMKM+DG AT+STAIV+LFLCSV+RPS PG 
Sbjct: 4   TTVRPVFTVFLTVRITIAAALASRPDVGSSMKMMDGFATNSTAIVSLFLCSVDRPSTPGR 63

Query: 139 PTKASLRELSSTSSITSSTNIY 161
           PTKA L  LSST  I SSTNI+
Sbjct: 64  PTKAFLNRLSSTKFIISSTNIF 85

[Close]
BLAST of CmoCh03G011670 vs. NCBI nr
Match: PKA53769.1 (hypothetical protein AXF42_Ash020690 [Apostasia shenzhenica])

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-19
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 0 

Query: 76  VPQTTVLPVSTVFRTVRMTMAAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVERPSI 135
           +  TTVLPV TVF TV +T+AAALAS PDVGSSM +I+GLATSSTAIVNL  CS+++P I
Sbjct: 6   IVHTTVLPVLTVFLTVLITIAAALASSPDVGSSMNIIEGLATSSTAIVNLLRCSIDKPFI 65

Query: 136 PGSPTKASLRELSSTSSITSSTNI 160
           PG+PT ASL  + STSS+TSSTNI
Sbjct: 66  PGNPTNASLSGVISTSSMTSSTNI 89

[Close]
BLAST of CmoCh03G011670 vs. NCBI nr
Match: PKU77890.1 (hypothetical protein MA16_Dca005722 [Dendrobium catenatum])

HSP 1 Score: 105.1 bits (261), Expect = 6.8e-19
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 0 

Query: 76  VPQTTVLPVSTVFRTVRMTMAAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVERPSI 135
           +  TTVLPVSTVF TV +TMAAALAS P+VGSS+ +I+GLATSSTAIVNLF CSV++P  
Sbjct: 6   IVHTTVLPVSTVFLTVLITMAAALASSPEVGSSINIIEGLATSSTAIVNLFRCSVDKPFT 65

Query: 136 PGSPTKASLRELSSTSSITSSTNI 160
           PG+PT A L   SSTSS+TSS NI
Sbjct: 66  PGNPTSAPLSVFSSTSSMTSSMNI 89

[Close]
BLAST of CmoCh03G011670 vs. NCBI nr
Match: KAF7820257.1 (Coatomer subunit beta-1 [Senna tora])

HSP 1 Score: 98.2 bits (243), Expect = 8.3e-17
Identity = 51/74 (68.92%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 71  HSTQEVPQTTVLPVSTVFRTVRMTMAAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSV 130
           +S   + +TTV PVSTVFRTVR+T+AAA ASRPDVGSS+K+++GLAT+STA+VNLFLCSV
Sbjct: 164 NSWNSLQKTTVRPVSTVFRTVRITIAAARASRPDVGSSIKIMEGLATNSTAMVNLFLCSV 223

Query: 131 ERPSIPGSPTKASL 145
           ++PSIPG PT+  L
Sbjct: 224 DKPSIPGRPTRKFL 237

The following BLAST results are available for this feature:
BLAST of CmoCh03G011670 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G011670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9IW727.3e-2789.16PDR8 OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9J2I11.4e-2586.75Similar to PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8) OS=Arundo donax OX=35708 PE=... [more]
A0A0A9JC223.4e-2483.13Similar to PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8) OS=Arundo donax OX=35708 PE=... [more]
A0A7N0SXS21.4e-2279.01Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
A0A7C9DQV02.4e-2268.69Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
BLAST of CmoCh03G011670 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7817222.13.0e-2271.00Coatomer subunit beta-1 [Senna tora][more]
PKU67855.11.5e-2176.83hypothetical protein MA16_Dca019381 [Dendrobium catenatum][more]
PKA53769.14.0e-1970.24hypothetical protein AXF42_Ash020690 [Apostasia shenzhenica][more]
PKU77890.16.8e-1970.24hypothetical protein MA16_Dca005722 [Dendrobium catenatum][more]
KAF7820257.18.3e-1768.92Coatomer subunit beta-1 [Senna tora][more]
BLAST of CmoCh03G011670 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G011670.1CmoCh03G011670.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006508 proteolysis
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004180 carboxypeptidase activity
molecular_function GO:0004519 endonuclease activity