CmoCh03G011660 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G011660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionzf-RVT domain-containing protein
LocationCmo_Chr03: 9174128 .. 9177795 (-)
RNA-Seq ExpressionCmoCh03G011660
SyntenyCmoCh03G011660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCCTCCTGTCTTTCTTCCAGCTAAGACGTCCATTAGAGTGGTCTTTCCAGCCCCACTGACACCTACGAGTGCTGTCAAGACACCAGGTCTGAAAGCTCCACTGACATCCCGCAGTAATTGAAGGCGGTCTTCATCAATCCCTTGACTCTTCATTTCCTGAAGAATTTGAACAAGAGAGCCATCCATTAGCCTTGTAAACTCCATTAACTTTCAAAAGAAAGCCGTAAGAACGAGGAACTTACAGCAGGCATATCCACATAGTAATTGACATGGTTAAATGCAAGGGAAAGCGGCTGAAAGGGCAAAACCATTCCTTTCTTTGCTGGACTATTTGAATTATTCGCCACATTTGAAGACTTTGCAGGTTGCGTTTGAGTACCTGTAATTAACCACACATTCAGACAAGACCATCCCAGAAAACAGGGATTGAGCTCTCAAGTTTCTTACCTCTGGATGCAGAATATGGATTTTTCTTGTTGTTATTTGCGTCATCAGCAATGGCAGCTCTTGAATCGCCCAAAGCTGAATTTGGTTTGTCAGATGGGTCAGTAACAGCAAAAAAGAAGAGATTTCATGGAAAATTCTTGAATGGAAACCAGAAGATTTGGCTTACGGTTGAGGAACGTCAATGAAATGATGAAGAGTAGGTTGAAAAGAAGAGAGAACCCAAAGAGTGCAGCAACACAAACCCAATACATTTTATTAGTATCATAAAAGTCTCTTGAACCAAGGAGAATCTTCCCAACTGTAGTTCCATTTAATCTGGGATCTGTTGGAGGCTGCATCAAGCCAATACAGGTTTAGTTTTGGAAACTAATGACTTGTTTGTGACATTTGATTATGATTTTATGAACGTCGTACCTGATTCCATCTGTCGTCCAGAAATTCATTAATGACAATTGCATTTTGTCCATACATCATAGGAGACGAGTAGTAACCCCATATGATCCATGGCTCTATGTCACCTGCAAATATCAAAGATATGTAAGTACTACTAATATCCAACCTTGGAAGAAGCTCAGACTTCATTGGAATCCGCATGGTCGTATTCACATAGAGATTGTGGCTTGTGGGTCAGGCTTGAATTGTAACGGCCCAAGCACACCACTACTAGATATTATCTTCTTTAGGTTTTTTCTTAGTGAGTTTCCCCTCAAGGTTTTTAAAACGCGTATGCTAAGAAGAGGTTTCCACATCCTTATAAAGAATGTTTCGTTCTCCTCCTCAACCAATATGGGATCTCGAAATAGTTAAGAGGCAAGAGGGTTTAGTCTACTTACTTCTGGCAATGATGAAGCCACCTAATACAAAGACCATTAGTAGAGTGAAACTTCCCATAGTGCTTGCAATAACTTGTACTCTCCCAGCTGCAGCAATGAACCGAAAGAGGGAGAGAGCCATCTGATGGATTCCAAAGTAGGCTAAGAGTTGCCGGAAAAACCTAACAAAAGGAAGCTCATGTAGTGTTGGTAAAAGTTGGACACTTCTCCAATTCAAACATTGAATGTCAGATGGTAGGTTCAACATACCTGCTAGCAGCCGGAGCAAACCCAATTGTGTAGTAAGTAAGGCAAATCCAAATGCCTGATTCCATCAATGATAAAGGAATTCTGAGTACCCAAATTGGCAACCCAAAAGCCCAAGCAGGAAAGAACAAAGAATCCCTTTGCTTATAGAAAACAGGCAGCCTGACGATGGTCAAGGCTAGTTCTGCCATTCCATTAAACATCATATTGATTAAGCTAAAGAACAGTGCTCCAAAGAACTTTCCACCTCCTTCCACAGTGCCCACTTTCATTTCTGTCCTGAAGAACACCGTCATTGTAATTAAAGACATGATTGTTATCTGAACTGTCTTGAACACATAGATGAATGAGTTACGCTTCATCAAAAGCCACTCCCTTGAAAAACAAGCCTTGAAGAGTTGCCAATTGGACAAGCCATACTTTTGGGTGACCAATGCAGCTGGATGAGTGTTCCTTTTGTCAAAAGGAACACTAAGTTCTGTGTTCAAACGTTGTCCAATACGAAACTTTTTGAATCCTTGTATAAATTCAGGAACGGAAGTGTATCTGTATGGTTGGCTCTTTCTAAACCAGTATTGTTCTTGGTCCTTTTTGGATGTGACTTCTTGCAGGAAGTCAGCTACTCCTTTCCTTTCTGGGCATTTGAAACCCATGAATTCAAAGAACTCAAGAACGTTGTCTCGTGGGCCTTGGTACACAATCTCACCCTCTGATATTAGAATAACATCATCAAAAAGCTCAAAGGTTTCTGGAGCTGGCTGTAGCAGAGAAATGATCATTGTTACATCCATTATGTGAACCATTTGCCTCATGAATTTGCATATCTGAAACGTTGTGGAGCTGTCTAACCCAGTTGAGATTTCATCCATAAACAATGCCTTCGCTGGTCCAACCAACATCTCCCCTGCCACATTTCAAACAAGAACTATGAATAAAAACACCATCCCAACCAAAACCGACTCGGTGTAACAGCTCAAGTCCACCACTAGTAGATATTATCTTCTTTAGACTTTTCCGTTTGGGCTTCTCTGCACCTGTTAGGGGAGGTTTCCACACCCTTATAAATGAATGTTTCGTTCTCCTCCCCAACTGATGTGGGATCTCACAATCTACCGCTTTTGGGGGCCAGCGGCCTCGCTGGCACACCGCTTGGTGTCTGGCTCAGATACCATTTATAACACCCTAAGTCCATAGTAGATATTGTCCTCTTTGGGTTTTTCCTTCTAGACTTCTTTTCAAGTTTTTAAAATGTGTAGGCTAGGGAAAGGTTTTCACACTCTTATAAAGAACGAACGAGTTTTGTTCTCCTCTCCAACTGATGTGGGATCTTACAATCCACCCCCTTCGGGGCCCAGCATCCTCACTGGCACACTGCTCCGTGTTTGGCTTTGATACCGTTTGTAATCGCCTAAGTCCACCACTAATATTGTCCTCTTCAGGCTTTCCCTTCTAGACTTTCACTCAAGGTTTTAAAACGTGTCGGCTAGGGAGAGATTTCCACACGCGTGATCTCACACCCAGCAAAATGGTTGACATGGAGGAACATACCAGTAGTGACACGCTTTCTCTGTCCCCCAGAAATGCCCCTCCTCATCTCATTCCCAACAATGATATCAGCACAAATATCCAAACCCATTATCTGCAACAGATGATTCAGCTTCAGCCAAAACGAAAAAACATAAACACAAACTAAGAACTGAAGGAAGGAAGGGCACAAAACCTTGAGAACATAGTCAGTGAACAAGTTGGTTCTCTGCCCTGAAACTGAAATGGCTTTCATGAACGCATCAATTTCAGGGTCGGGTTTGATTCCAGCTTCTTTTTCTCTCCTCGAAAGCTCTTCCAACATTTCATACCTAGTTCCAACCCCTTGGCATCTCCCTGAGAAATCAAACGTCTCCCTCACTGTCATTTCCCAGTTATGAAGATCGTGTTGGCTGATATACGCAGAAGTCCTCTGAGGAACAAACTCCTTAAACTCGTGCCCACAATACGTGATTCTTCCCTCTTCCTTCAAGTTATTTTCCAGTTTCCCTGCAAGTGCTCGCAGCAATGTCGTCTTCCCAGAACTCGGAGGACCCAGAAGAAGAGTCATCCTACATTTTTACATCGATCTCACCAAATGGGTATCACCTAA

mRNA sequence

ATGTATCCTCCTGTCTTTCTTCCAGCTAAGACGTCCATTAGAGTGGTCTTTCCAGCCCCACTGACACCTACGAGTGCTGTCAAGACACCAGGTCTGAAAGCTCCACTGACATCCCGCACAATGGCAGCTCTTGAATCGCCCAAAGCTGAATTTGGTTTGTCAGATGGGTCAGTAACAGCAAAAAAGAAGAGATTTCATGGAAAATTCTTGAATGGAAACCAGAAGATTTGGCTTACGGTTGAGGAACGCAGCCTGACGATGGTCAAGGCTAGTTCTGCCATTCCATTAAACATCATATTGATTAAGCTAAAGAACAGTGCTCCAAAGAACTTTCCACCTCCTTCCACAGTGCCCACTTTCATTTCTGTCCTGAAGAACACCGTCATTTTTCCCTGCAAGTGCTCGCAGCAATGTCGTCTTCCCAGAACTCGGAGGACCCAGAAGAAGAGTCATCCTACATTTTTACATCGATCTCACCAAATGGGTATCACCTAA

Coding sequence (CDS)

ATGTATCCTCCTGTCTTTCTTCCAGCTAAGACGTCCATTAGAGTGGTCTTTCCAGCCCCACTGACACCTACGAGTGCTGTCAAGACACCAGGTCTGAAAGCTCCACTGACATCCCGCACAATGGCAGCTCTTGAATCGCCCAAAGCTGAATTTGGTTTGTCAGATGGGTCAGTAACAGCAAAAAAGAAGAGATTTCATGGAAAATTCTTGAATGGAAACCAGAAGATTTGGCTTACGGTTGAGGAACGCAGCCTGACGATGGTCAAGGCTAGTTCTGCCATTCCATTAAACATCATATTGATTAAGCTAAAGAACAGTGCTCCAAAGAACTTTCCACCTCCTTCCACAGTGCCCACTTTCATTTCTGTCCTGAAGAACACCGTCATTTTTCCCTGCAAGTGCTCGCAGCAATGTCGTCTTCCCAGAACTCGGAGGACCCAGAAGAAGAGTCATCCTACATTTTTACATCGATCTCACCAAATGGGTATCACCTAA

Protein sequence

MYPPVFLPAKTSIRVVFPAPLTPTSAVKTPGLKAPLTSRTMAALESPKAEFGLSDGSVTAKKKRFHGKFLNGNQKIWLTVEERSLTMVKASSAIPLNIILIKLKNSAPKNFPPPSTVPTFISVLKNTVIFPCKCSQQCRLPRTRRTQKKSHPTFLHRSHQMGIT
Homology
[Close]
BLAST of CmoCh03G011660 vs. ExPASy TrEMBL
Match: T1LFU3 (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 1  MYPPVFLPAKTSIRVVFPAPLTPTSAVKTPGLKAPLT 38
          MYPPVFLPAKTSIRVVFPAPLTP +AV TPGLK PLT
Sbjct: 6  MYPPVFLPAKTSIRVVFPAPLTPINAVSTPGLKEPLT 42

[Close]
BLAST of CmoCh03G011660 vs. ExPASy TrEMBL
Match: A0A2P2JV06 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.1e-07
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 1  MYPPVFLPAKTSIRVVFPAPLTPTSAVKTPGLKAPLT 38
          +YPPVFLPA TSIRVVFPAPLTP  AV+TPGLKAPLT
Sbjct: 29 IYPPVFLPANTSIRVVFPAPLTPIKAVRTPGLKAPLT 65

[Close]
BLAST of CmoCh03G011660 vs. ExPASy TrEMBL
Match: A0A2I0B6N5 (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005335 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1  MYPPVFLPAKTSIRVVFPAPLTPTSAVKTPGLKAPLT 38
          MYPPVFLPA TSI+VV PAPLTP SAV+TPGL APLT
Sbjct: 7  MYPPVFLPASTSIKVVLPAPLTPISAVRTPGLNAPLT 43

[Close]
BLAST of CmoCh03G011660 vs. ExPASy TrEMBL
Match: A0A0A8XWR3 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 32/37 (86.49%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1  MYPPVFLPAKTSIRVVFPAPLTPTSAVKTPGLKAPLT 38
          MYPPVFLPA TSIRVV PAPLTP SAV TPGLK PLT
Sbjct: 7  MYPPVFLPANTSIRVVLPAPLTPISAVNTPGLKDPLT 43

[Close]
BLAST of CmoCh03G011660 vs. ExPASy TrEMBL
Match: A0A7N0SXV9 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-04
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1  MYPPVFLPAKTSIRVVFPAPLTPTSAVKTPGLKAPLT 38
          +YPPVFLPA+TSI VVFPAP+ PTSAV+TPG   P T
Sbjct: 5  IYPPVFLPARTSINVVFPAPVAPTSAVRTPGENTPHT 41

[Close]
BLAST of CmoCh03G011660 vs. NCBI nr
Match: PKA63440.1 (hypothetical protein AXF42_Ash005335 [Apostasia shenzhenica])

HSP 1 Score: 62.4 bits (150), Expect = 4.2e-06
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1  MYPPVFLPAKTSIRVVFPAPLTPTSAVKTPGLKAPLT 38
          MYPPVFLPA TSI+VV PAPLTP SAV+TPGL APLT
Sbjct: 7  MYPPVFLPASTSIKVVLPAPLTPISAVRTPGLNAPLT 43

[Close]
BLAST of CmoCh03G011660 vs. NCBI nr
Match: KAF4355008.1 (hypothetical protein G4B88_008483 [Cannabis sativa])

HSP 1 Score: 55.1 bits (131), Expect = 6.7e-04
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 1   MYPPVFLPAKTSIRVVFPAPLTPTSAVKTPGLKAPL 37
           MYP VFLPA+TS +VVFPAPLTP +AV+TPGL  PL
Sbjct: 152 MYPMVFLPARTSSKVVFPAPLTPINAVRTPGLNEPL 187

The following BLAST results are available for this feature:
BLAST of CmoCh03G011660 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G011660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
T1LFU31.8e-0789.19Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1[more]
A0A2P2JV064.1e-0786.49Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A2I0B6N52.0e-0683.78Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005335 P... [more]
A0A0A8XWR32.0e-0686.49Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A7N0SXV92.5e-0472.97Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
BLAST of CmoCh03G011660 vs. NCBI nr
Match NameE-valueIdentityDescription
PKA63440.14.2e-0683.78hypothetical protein AXF42_Ash005335 [Apostasia shenzhenica][more]
KAF4355008.16.7e-0475.00hypothetical protein G4B88_008483 [Cannabis sativa][more]
BLAST of CmoCh03G011660 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G011660.1CmoCh03G011660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane