CmoCh03G010510 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G010510
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr03: 7847387 .. 7848666 (-)
RNA-Seq ExpressionCmoCh03G010510
SyntenyCmoCh03G010510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGAGGGAAGAAGAAAGAGGAATTTAATAGAATTGGAGAATGTCTCTACCAATTCAATCGTTAAACATTCTTCTCCGCCATTTTGCAGCATTTAATGGCGGCAAATCTGGAGCGTTTCTTCTGCTTTTCAACTCCTTTTTAGGTCTCCATCTCTTCCTCTTAATTTCGAAGGTTCGTACTTGCCTCGACCTTTCACAGTTTTGACCGCTTCGTTCTTTCTCGCCTGCTTTTGTTTGTTTGCACTTGCAGGAAAAAGTCTTTTTCAATCGAATCACACACGAAGCATCGTTGATTCTTCTCTTTTTTTTGTTCAATTTTGTTCGTCTGGGCTGTTTCCTTCGATTGAGATTCCATAAGCCTGTTCTTCCTGATCCATTGTGTTGTGTGGAGTCTGGTAGGAGTAGATTTAATTTAATGTGCGTTTTGCTTCATTTTTTTTTTTTTTTTTATGTTTATTGTTTTGCTTGTTTGGATTACGTAGAAGTGAGATCTGCTGATCGGTGTGTTCAATCTCCGCAGGAATTTGGGTCTCCTTTGTGATTTAAACCTGTTGATTTTGTTCTTCAGCTCTTGAATATTTGTCCACTTTGTTTCGTTGTTTAGCTTATTGTTCTCGATTCTAGTTGTTTTAGCTTGAATTTCTTTTGGGGTCGTTTTGGCTATTTTCTGGACTTTTTTTTTAGTTTTTACATTTACGGTTTTACAATGACCTAAGAGTTAATTATGGCCAACGTAACAATTCTACAAGGAAACATCTCCGTTGCGATTTATTTATTTATTTTTAGTTTGAGATCTGAATCCCTTAATCTTAAATGCTATACCAATGAAAGCGCTTAAGTAGAAAGACCTGCACTTTGAAATTGGCCTGTGATTTACTTTCATGAGCTTTCGTTTTGGTTGACTAGTACATGTTTTGTATGATCAAGCTTGTCTAGCCACCGAATTTTTTGTTTGTAAATAAATTTGGAACGTTGTTGTAAAATTTGAAGTTTTCCTTTGAAACTTGTTGACCTTTAGGATTTATTTTTCTTCACTTGTCATTTTGACCTGGTTATTTTCCATCTGCACCTACTGTTTTATATGTTTAAGTTAAATCTTATCTCGATTAAATAATTTAAAATTTTCTTGGTTCTTCTTTGTCCTTCTATTTATTTATTGATACTAGTCATTGGTACTTTGCTGATGGTAAATTTTGTACTACAGATAGGACTGTTGAGCATCAAGATCAAGCACTTCTGGTTTTTTCTTTTGAATGAAGATTGAGAACTTCAAGTGCTGA

mRNA sequence

GTGGAGGGAAGAAGAAAGAGGAATTTAATAGAATTGGAGAATGTCTCTACCAATTCAATCGTTAAACATTCTTCTCCGCCATTTTGCAGCATTTAATGGCGGCAAATCTGGAGCGTTTCTTCTGCTTTTCAACTCCTTTTTAGGTCTCCATCTCTTCCTCTTAATTTCGAAGTTTTTACATTTACGGTTTTACAATGACCTAAGAGTTAATTATGGCCAACATAGGACTGTTGAGCATCAAGATCAAGCACTTCTGATTGAGAACTTCAAGTGCTGA

Coding sequence (CDS)

ATGTCTCTACCAATTCAATCGTTAAACATTCTTCTCCGCCATTTTGCAGCATTTAATGGCGGCAAATCTGGAGCGTTTCTTCTGCTTTTCAACTCCTTTTTAGGTCTCCATCTCTTCCTCTTAATTTCGAAGTTTTTACATTTACGGTTTTACAATGACCTAAGAGTTAATTATGGCCAACATAGGACTGTTGAGCATCAAGATCAAGCACTTCTGATTGAGAACTTCAAGTGCTGA

Protein sequence

MSLPIQSLNILLRHFAAFNGGKSGAFLLLFNSFLGLHLFLLISKFLHLRFYNDLRVNYGQHRTVEHQDQALLIENFKC
Homology
[Close]
BLAST of CmoCh03G010510 vs. NCBI nr
Match: KAG7034408.1 (hypothetical protein SDJN02_04137, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.6 bits (205), Expect = 8.4e-13
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 0 

Query: 1  MSLPIQSLNILLRHFAAFNGGKSGAFLLLFNSFLGLHLFLLISK 45
          MSLPIQSLNILLRHFAAFNGGKSGAFLLLFNSFL LHLFLLISK
Sbjct: 1  MSLPIQSLNILLRHFAAFNGGKSGAFLLLFNSFLALHLFLLISK 44

The following BLAST results are available for this feature:
BLAST of CmoCh03G010510 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G010510 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G010510 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034408.18.4e-1397.73hypothetical protein SDJN02_04137, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh03G010510 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G010510.1CmoCh03G010510.1mRNA