Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCACAGAAAAGTCCTTTCCCAACGAAATCTTCCCTTCTCATGGGAGAAAAACCCCGCCCGTTCCAAATTCTACTTCCGGGATTTTCAAGCCCTTGCCTTACAGCCCCCGCCGTCGTCCACCTACCACAGAGGAGACTCTGAATTCGACGTCGTTTCTAAGATTCCTCCGCCGCCGTACCGGCAGCAGCCCCGTTCAATTAGAAACGCCTCCGCCAAGGAAGACGACCCTTTTCTCATGGCCTACAAGGAGTGCACTAAAAGTGTAAAAAATGGAAGCTTTGTGGAGAGAGGAAACAAAGGAGCCGCCGCCGTTTCGAAGAAGAGTAAGTTGTTTGGTTTTTCTTGCAAGAGCATTCATTCTTGTGAAATTAGATCAAAATAA
mRNA sequence
ATGAATCACAGAAAAGTCCTTTCCCAACGAAATCTTCCCTTCTCATGGGAGAAAAACCCCGCCCGTTCCAAATTCTACTTCCGGGATTTTCAAGCCCTTGCCTTACAGCCCCCGCCGTCGTCCACCTACCACAGAGGAGACTCTGAATTCGACGTCGTTTCTAAGATTCCTCCGCCGCCGTACCGGCAGCAGCCCCGTTCAATTAGAAACGCCTCCGCCAAGGAAGACGACCCTTTTCTCATGGCCTACAAGGAGTGCACTAAAAGTGTAAAAAATGGAAGCTTTGTGGAGAGAGGAAACAAAGGAGCCGCCGCCGTTTCGAAGAAGAGTAAGTTGTTTGGTTTTTCTTGCAAGAGCATTCATTCTTGTGAAATTAGATCAAAATAA
Coding sequence (CDS)
ATGAATCACAGAAAAGTCCTTTCCCAACGAAATCTTCCCTTCTCATGGGAGAAAAACCCCGCCCGTTCCAAATTCTACTTCCGGGATTTTCAAGCCCTTGCCTTACAGCCCCCGCCGTCGTCCACCTACCACAGAGGAGACTCTGAATTCGACGTCGTTTCTAAGATTCCTCCGCCGCCGTACCGGCAGCAGCCCCGTTCAATTAGAAACGCCTCCGCCAAGGAAGACGACCCTTTTCTCATGGCCTACAAGGAGTGCACTAAAAGTGTAAAAAATGGAAGCTTTGTGGAGAGAGGAAACAAAGGAGCCGCCGCCGTTTCGAAGAAGAGTAAGTTGTTTGGTTTTTCTTGCAAGAGCATTCATTCTTGTGAAATTAGATCAAAATAA
Protein sequence
MNHRKVLSQRNLPFSWEKNPARSKFYFRDFQALALQPPPSSTYHRGDSEFDVVSKIPPPPYRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSKLFGFSCKSIHSCEIRSK
Homology
BLAST of CmoCh03G009380 vs. ExPASy TrEMBL
Match:
A0A0A0KGJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1)
HSP 1 Score: 104.0 bits (258), Expect = 4.8e-19
Identity = 75/132 (56.82%), Postives = 83/132 (62.88%), Query Frame = 0
Query: 3 HRKVLSQRN-LPFSWEKNPARSKFYFRDFQALALQPPPSSTYHR--GDSEFD--VVSKIP 62
HRK+LSQ N +P + P SK FRDFQALAL SS Y G S+FD V SKIP
Sbjct: 5 HRKLLSQGNIIPHHNQNPPGVSK--FRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIP 64
Query: 63 PPPYRQQPRSIRNASAKE--DDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSK-LFG 122
PPP R P SAKE DDPFL+AYKECTKSVKN +G V KKSK LFG
Sbjct: 65 PPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKN-----KGINNDVGVVKKSKFLFG 124
Query: 123 -FSCKSIHSCEI 126
FSCK+IHSC+I
Sbjct: 125 RFSCKTIHSCDI 129
BLAST of CmoCh03G009380 vs. ExPASy TrEMBL
Match:
A0A5D3CLL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003820 PE=4 SV=1)
HSP 1 Score: 99.8 bits (247), Expect = 9.0e-18
Identity = 70/131 (53.44%), Postives = 80/131 (61.07%), Query Frame = 0
Query: 2 NHRKVLSQRNLPFSWEKNPARSKFYFRDFQALA--LQPPPSSTYHRGD-SEFD--VVSKI 61
+HRKVLSQ N+ + P SK FRDFQALA L SSTY D S+FD V SKI
Sbjct: 4 HHRKVLSQGNIIPHHQNPPGLSK--FRDFQALALHLHSHSSSTYKNPDASQFDHLVSSKI 63
Query: 62 PPPPYRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSKLF--G 121
PPPP R P + +A + DDPFL+AYKECTKSVKN G V KKSK F
Sbjct: 64 PPPPCRFPPYNAASAKEELDDPFLVAYKECTKSVKNKGINNLG------VVKKSKFFFGR 123
Query: 122 FSCKSIHSCEI 126
FSCK+I SC+I
Sbjct: 124 FSCKTIDSCDI 126
BLAST of CmoCh03G009380 vs. ExPASy TrEMBL
Match:
A0A1R3HKK6 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1)
HSP 1 Score: 84.7 bits (208), Expect = 3.0e-13
Identity = 58/136 (42.65%), Postives = 65/136 (47.79%), Query Frame = 0
Query: 1 MNHRKVLSQRNLPFSWEKNPARSKFYFRD-------FQALALQPPPSSTYHRGDSEFDVV 60
MN KV SQ N+PFSWE P K +D Q L P P T S
Sbjct: 1 MNQTKVHSQGNVPFSWENKPGVCKMTSQDCLKEDFFLQKLPPPPCPPETARVSISNSIQD 60
Query: 61 SKIPPPPYRQQP---RSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKS 120
+KIPPPP QP S R K DDPFL AYKECTKS G + N G + KK
Sbjct: 61 NKIPPPPGAFQPPSRSSSRRGLKKSDDPFLAAYKECTKSTNKGKLAKNVNGGGSGNLKKG 120
Query: 121 KLFGFSCKSIHSCEIR 127
+F FSCK SC +R
Sbjct: 121 -VFSFSCK--QSCSVR 133
BLAST of CmoCh03G009380 vs. ExPASy TrEMBL
Match:
F6I2E0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0541g00010 PE=4 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 57/140 (40.71%), Postives = 74/140 (52.86%), Query Frame = 0
Query: 1 MNHRKVLSQRNLPFSWEKNPARSKFYFRDFQA----------LALQPPPSSTYHRGDSEF 60
M+HRKV SQ ++PFSWE +P SK ++ A L PPPS +
Sbjct: 1 MSHRKVRSQGSVPFSWEDSPGVSKAAHQECPANIGIYALNLPLPPSPPPSLPPSNSPPQV 60
Query: 61 DVVS-KIPPPPYRQQPRSIRNAS----AKEDDPFLMAYKECTKSVKNGSFVERGNKGAAA 120
+ + KIP PP QP R +S +E+DPFL AYKECTKSV++ + KG
Sbjct: 61 SIQNVKIPLPPCPDQPPLRRTSSKGLWGQEEDPFLAAYKECTKSVESAKKPKESKKGFGF 120
Query: 121 VSKKSKLFGFSCKSIHSCEI 126
+K K F FSCK HSCE+
Sbjct: 121 GRRKCK-FTFSCK--HSCEV 137
BLAST of CmoCh03G009380 vs. ExPASy TrEMBL
Match:
W9RVC8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1)
HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 64/149 (42.95%), Postives = 79/149 (53.02%), Query Frame = 0
Query: 1 MNHRKVLSQRNLPFSWEKNPARSKFYFRD------FQALALQPPPSSTYHRGDSEFDVVS 60
M HRKV SQ ++PF WE P SK +D QAL L SS + +F ++S
Sbjct: 1 MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKSSPPSKA-QQFSLLS 60
Query: 61 -------------KIPPPPYRQQPRSIRNASAK----EDDPFLMAYKECTKSVKNGSFVE 120
KIPPPP QP S R++SAK ++DPFL+AYKECTK VK G E
Sbjct: 61 DGSKLVSATNDLLKIPPPPCLSQPPS-RSSSAKGLRWQEDPFLLAYKECTKPVKKGKDNE 120
Query: 121 RGNKGAAAVSKKSKLFGFSCKSIHSCEIR 127
NK + V KS FSCK +SCE+R
Sbjct: 121 -DNKKRSKVIMKSMFMYFSCK--NSCEVR 144
BLAST of CmoCh03G009380 vs. NCBI nr
Match:
KAG6604109.1 (hypothetical protein SDJN03_04718, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 221.5 bits (563), Expect = 4.2e-54
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0
Query: 1 MNHRKVLSQRNLPFSWEKNPARSKFYFRDFQALALQPPPSSTYHRGDSEFDVVSKIPPPP 60
MNHRKVLSQRNLPFSWE+NPARSKFYFRDFQALALQP PSSTYHRGDSEFDVVSKIPPPP
Sbjct: 1 MNHRKVLSQRNLPFSWEQNPARSKFYFRDFQALALQPSPSSTYHRGDSEFDVVSKIPPPP 60
Query: 61 YRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKS 111
YRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKS
Sbjct: 61 YRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKS 110
BLAST of CmoCh03G009380 vs. NCBI nr
Match:
KAG6594957.1 (hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026918.1 hypothetical protein SDJN02_10925, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 117.9 bits (294), Expect = 6.6e-23
Identity = 73/132 (55.30%), Postives = 85/132 (64.39%), Query Frame = 0
Query: 1 MNHRKVLSQRNLPFSWEKNPARS-KFYFRDFQALALQPPPSSTYHRGDSEFDVVSKI-PP 60
M+H+K+ S+ N+PFSWE+ P S K F+D +QP P + H DSEFD V KI PP
Sbjct: 1 MSHKKLYSKGNVPFSWEEKPGISKKICFQD-----VQPLPLHSVHE-DSEFDDVGKIPPP 60
Query: 61 PPYRQQPRSIRNASAK----EDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSKLFG 120
PP R QP S+RNAS K E+DPFL AYKECTKSVK G V+KKSKLFG
Sbjct: 61 PPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKL----------VAKKSKLFG 116
Query: 121 FSCKSIHSCEIR 127
F CKS SCEIR
Sbjct: 121 FLCKSFDSCEIR 116
BLAST of CmoCh03G009380 vs. NCBI nr
Match:
KGN48633.1 (hypothetical protein Csa_003745 [Cucumis sativus])
HSP 1 Score: 104.0 bits (258), Expect = 9.9e-19
Identity = 75/132 (56.82%), Postives = 83/132 (62.88%), Query Frame = 0
Query: 3 HRKVLSQRN-LPFSWEKNPARSKFYFRDFQALALQPPPSSTYHR--GDSEFD--VVSKIP 62
HRK+LSQ N +P + P SK FRDFQALAL SS Y G S+FD V SKIP
Sbjct: 5 HRKLLSQGNIIPHHNQNPPGVSK--FRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIP 64
Query: 63 PPPYRQQPRSIRNASAKE--DDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSK-LFG 122
PPP R P SAKE DDPFL+AYKECTKSVKN +G V KKSK LFG
Sbjct: 65 PPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKN-----KGINNDVGVVKKSKFLFG 124
Query: 123 -FSCKSIHSCEI 126
FSCK+IHSC+I
Sbjct: 125 RFSCKTIHSCDI 129
BLAST of CmoCh03G009380 vs. NCBI nr
Match:
KAA0036397.1 (hypothetical protein E6C27_scaffold18G001980 [Cucumis melo var. makuwa] >TYK12793.1 hypothetical protein E5676_scaffold255G003820 [Cucumis melo var. makuwa])
HSP 1 Score: 99.8 bits (247), Expect = 1.9e-17
Identity = 70/131 (53.44%), Postives = 80/131 (61.07%), Query Frame = 0
Query: 2 NHRKVLSQRNLPFSWEKNPARSKFYFRDFQALA--LQPPPSSTYHRGD-SEFD--VVSKI 61
+HRKVLSQ N+ + P SK FRDFQALA L SSTY D S+FD V SKI
Sbjct: 4 HHRKVLSQGNIIPHHQNPPGLSK--FRDFQALALHLHSHSSSTYKNPDASQFDHLVSSKI 63
Query: 62 PPPPYRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSKLF--G 121
PPPP R P + +A + DDPFL+AYKECTKSVKN G V KKSK F
Sbjct: 64 PPPPCRFPPYNAASAKEELDDPFLVAYKECTKSVKNKGINNLG------VVKKSKFFFGR 123
Query: 122 FSCKSIHSCEI 126
FSCK+I SC+I
Sbjct: 124 FSCKTIDSCDI 126
BLAST of CmoCh03G009380 vs. NCBI nr
Match:
OMO70852.1 (hypothetical protein COLO4_28461 [Corchorus olitorius])
HSP 1 Score: 84.7 bits (208), Expect = 6.2e-13
Identity = 58/136 (42.65%), Postives = 65/136 (47.79%), Query Frame = 0
Query: 1 MNHRKVLSQRNLPFSWEKNPARSKFYFRD-------FQALALQPPPSSTYHRGDSEFDVV 60
MN KV SQ N+PFSWE P K +D Q L P P T S
Sbjct: 1 MNQTKVHSQGNVPFSWENKPGVCKMTSQDCLKEDFFLQKLPPPPCPPETARVSISNSIQD 60
Query: 61 SKIPPPPYRQQP---RSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKS 120
+KIPPPP QP S R K DDPFL AYKECTKS G + N G + KK
Sbjct: 61 NKIPPPPGAFQPPSRSSSRRGLKKSDDPFLAAYKECTKSTNKGKLAKNVNGGGSGNLKKG 120
Query: 121 KLFGFSCKSIHSCEIR 127
+F FSCK SC +R
Sbjct: 121 -VFSFSCK--QSCSVR 133
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KGJ1 | 4.8e-19 | 56.82 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1 | [more] |
A0A5D3CLL9 | 9.0e-18 | 53.44 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1R3HKK6 | 3.0e-13 | 42.65 | Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1 | [more] |
F6I2E0 | 1.5e-12 | 40.71 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0541g00010 PE=4 SV=... | [more] |
W9RVC8 | 1.9e-12 | 42.95 | Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAG6604109.1 | 4.2e-54 | 98.18 | hypothetical protein SDJN03_04718, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6594957.1 | 6.6e-23 | 55.30 | hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KGN48633.1 | 9.9e-19 | 56.82 | hypothetical protein Csa_003745 [Cucumis sativus] | [more] |
KAA0036397.1 | 1.9e-17 | 53.44 | hypothetical protein E6C27_scaffold18G001980 [Cucumis melo var. makuwa] >TYK1279... | [more] |
OMO70852.1 | 6.2e-13 | 42.65 | hypothetical protein COLO4_28461 [Corchorus olitorius] | [more] |
Match Name | E-value | Identity | Description | |