CmoCh03G009380 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G009380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionGrowth-regulating factor
LocationCmo_Chr03: 7105934 .. 7106320 (+)
RNA-Seq ExpressionCmoCh03G009380
SyntenyCmoCh03G009380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCACAGAAAAGTCCTTTCCCAACGAAATCTTCCCTTCTCATGGGAGAAAAACCCCGCCCGTTCCAAATTCTACTTCCGGGATTTTCAAGCCCTTGCCTTACAGCCCCCGCCGTCGTCCACCTACCACAGAGGAGACTCTGAATTCGACGTCGTTTCTAAGATTCCTCCGCCGCCGTACCGGCAGCAGCCCCGTTCAATTAGAAACGCCTCCGCCAAGGAAGACGACCCTTTTCTCATGGCCTACAAGGAGTGCACTAAAAGTGTAAAAAATGGAAGCTTTGTGGAGAGAGGAAACAAAGGAGCCGCCGCCGTTTCGAAGAAGAGTAAGTTGTTTGGTTTTTCTTGCAAGAGCATTCATTCTTGTGAAATTAGATCAAAATAA

mRNA sequence

ATGAATCACAGAAAAGTCCTTTCCCAACGAAATCTTCCCTTCTCATGGGAGAAAAACCCCGCCCGTTCCAAATTCTACTTCCGGGATTTTCAAGCCCTTGCCTTACAGCCCCCGCCGTCGTCCACCTACCACAGAGGAGACTCTGAATTCGACGTCGTTTCTAAGATTCCTCCGCCGCCGTACCGGCAGCAGCCCCGTTCAATTAGAAACGCCTCCGCCAAGGAAGACGACCCTTTTCTCATGGCCTACAAGGAGTGCACTAAAAGTGTAAAAAATGGAAGCTTTGTGGAGAGAGGAAACAAAGGAGCCGCCGCCGTTTCGAAGAAGAGTAAGTTGTTTGGTTTTTCTTGCAAGAGCATTCATTCTTGTGAAATTAGATCAAAATAA

Coding sequence (CDS)

ATGAATCACAGAAAAGTCCTTTCCCAACGAAATCTTCCCTTCTCATGGGAGAAAAACCCCGCCCGTTCCAAATTCTACTTCCGGGATTTTCAAGCCCTTGCCTTACAGCCCCCGCCGTCGTCCACCTACCACAGAGGAGACTCTGAATTCGACGTCGTTTCTAAGATTCCTCCGCCGCCGTACCGGCAGCAGCCCCGTTCAATTAGAAACGCCTCCGCCAAGGAAGACGACCCTTTTCTCATGGCCTACAAGGAGTGCACTAAAAGTGTAAAAAATGGAAGCTTTGTGGAGAGAGGAAACAAAGGAGCCGCCGCCGTTTCGAAGAAGAGTAAGTTGTTTGGTTTTTCTTGCAAGAGCATTCATTCTTGTGAAATTAGATCAAAATAA

Protein sequence

MNHRKVLSQRNLPFSWEKNPARSKFYFRDFQALALQPPPSSTYHRGDSEFDVVSKIPPPPYRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSKLFGFSCKSIHSCEIRSK
Homology
BLAST of CmoCh03G009380 vs. ExPASy TrEMBL
Match: A0A0A0KGJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.8e-19
Identity = 75/132 (56.82%), Postives = 83/132 (62.88%), Query Frame = 0

Query: 3   HRKVLSQRN-LPFSWEKNPARSKFYFRDFQALALQPPPSSTYHR--GDSEFD--VVSKIP 62
           HRK+LSQ N +P   +  P  SK  FRDFQALAL    SS Y    G S+FD  V SKIP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSK--FRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIP 64

Query: 63  PPPYRQQPRSIRNASAKE--DDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSK-LFG 122
           PPP R  P      SAKE  DDPFL+AYKECTKSVKN     +G      V KKSK LFG
Sbjct: 65  PPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKN-----KGINNDVGVVKKSKFLFG 124

Query: 123 -FSCKSIHSCEI 126
            FSCK+IHSC+I
Sbjct: 125 RFSCKTIHSCDI 129

BLAST of CmoCh03G009380 vs. ExPASy TrEMBL
Match: A0A5D3CLL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003820 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.0e-18
Identity = 70/131 (53.44%), Postives = 80/131 (61.07%), Query Frame = 0

Query: 2   NHRKVLSQRNLPFSWEKNPARSKFYFRDFQALA--LQPPPSSTYHRGD-SEFD--VVSKI 61
           +HRKVLSQ N+    +  P  SK  FRDFQALA  L    SSTY   D S+FD  V SKI
Sbjct: 4   HHRKVLSQGNIIPHHQNPPGLSK--FRDFQALALHLHSHSSSTYKNPDASQFDHLVSSKI 63

Query: 62  PPPPYRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSKLF--G 121
           PPPP R  P +  +A  + DDPFL+AYKECTKSVKN      G      V KKSK F   
Sbjct: 64  PPPPCRFPPYNAASAKEELDDPFLVAYKECTKSVKNKGINNLG------VVKKSKFFFGR 123

Query: 122 FSCKSIHSCEI 126
           FSCK+I SC+I
Sbjct: 124 FSCKTIDSCDI 126

BLAST of CmoCh03G009380 vs. ExPASy TrEMBL
Match: A0A1R3HKK6 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.0e-13
Identity = 58/136 (42.65%), Postives = 65/136 (47.79%), Query Frame = 0

Query: 1   MNHRKVLSQRNLPFSWEKNPARSKFYFRD-------FQALALQPPPSSTYHRGDSEFDVV 60
           MN  KV SQ N+PFSWE  P   K   +D        Q L   P P  T     S     
Sbjct: 1   MNQTKVHSQGNVPFSWENKPGVCKMTSQDCLKEDFFLQKLPPPPCPPETARVSISNSIQD 60

Query: 61  SKIPPPPYRQQP---RSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKS 120
           +KIPPPP   QP    S R    K DDPFL AYKECTKS   G   +  N G +   KK 
Sbjct: 61  NKIPPPPGAFQPPSRSSSRRGLKKSDDPFLAAYKECTKSTNKGKLAKNVNGGGSGNLKKG 120

Query: 121 KLFGFSCKSIHSCEIR 127
            +F FSCK   SC +R
Sbjct: 121 -VFSFSCK--QSCSVR 133

BLAST of CmoCh03G009380 vs. ExPASy TrEMBL
Match: F6I2E0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0541g00010 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 57/140 (40.71%), Postives = 74/140 (52.86%), Query Frame = 0

Query: 1   MNHRKVLSQRNLPFSWEKNPARSKFYFRDFQA----------LALQPPPSSTYHRGDSEF 60
           M+HRKV SQ ++PFSWE +P  SK   ++  A          L   PPPS        + 
Sbjct: 1   MSHRKVRSQGSVPFSWEDSPGVSKAAHQECPANIGIYALNLPLPPSPPPSLPPSNSPPQV 60

Query: 61  DVVS-KIPPPPYRQQPRSIRNAS----AKEDDPFLMAYKECTKSVKNGSFVERGNKGAAA 120
            + + KIP PP   QP   R +S     +E+DPFL AYKECTKSV++    +   KG   
Sbjct: 61  SIQNVKIPLPPCPDQPPLRRTSSKGLWGQEEDPFLAAYKECTKSVESAKKPKESKKGFGF 120

Query: 121 VSKKSKLFGFSCKSIHSCEI 126
             +K K F FSCK  HSCE+
Sbjct: 121 GRRKCK-FTFSCK--HSCEV 137

BLAST of CmoCh03G009380 vs. ExPASy TrEMBL
Match: W9RVC8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 64/149 (42.95%), Postives = 79/149 (53.02%), Query Frame = 0

Query: 1   MNHRKVLSQRNLPFSWEKNPARSKFYFRD------FQALALQPPPSSTYHRGDSEFDVVS 60
           M HRKV SQ ++PF WE  P  SK   +D       QAL L    SS   +   +F ++S
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKSSPPSKA-QQFSLLS 60

Query: 61  -------------KIPPPPYRQQPRSIRNASAK----EDDPFLMAYKECTKSVKNGSFVE 120
                        KIPPPP   QP S R++SAK    ++DPFL+AYKECTK VK G   E
Sbjct: 61  DGSKLVSATNDLLKIPPPPCLSQPPS-RSSSAKGLRWQEDPFLLAYKECTKPVKKGKDNE 120

Query: 121 RGNKGAAAVSKKSKLFGFSCKSIHSCEIR 127
             NK  + V  KS    FSCK  +SCE+R
Sbjct: 121 -DNKKRSKVIMKSMFMYFSCK--NSCEVR 144

BLAST of CmoCh03G009380 vs. NCBI nr
Match: KAG6604109.1 (hypothetical protein SDJN03_04718, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.5 bits (563), Expect = 4.2e-54
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   MNHRKVLSQRNLPFSWEKNPARSKFYFRDFQALALQPPPSSTYHRGDSEFDVVSKIPPPP 60
           MNHRKVLSQRNLPFSWE+NPARSKFYFRDFQALALQP PSSTYHRGDSEFDVVSKIPPPP
Sbjct: 1   MNHRKVLSQRNLPFSWEQNPARSKFYFRDFQALALQPSPSSTYHRGDSEFDVVSKIPPPP 60

Query: 61  YRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKS 111
           YRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKS
Sbjct: 61  YRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKS 110

BLAST of CmoCh03G009380 vs. NCBI nr
Match: KAG6594957.1 (hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026918.1 hypothetical protein SDJN02_10925, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.9 bits (294), Expect = 6.6e-23
Identity = 73/132 (55.30%), Postives = 85/132 (64.39%), Query Frame = 0

Query: 1   MNHRKVLSQRNLPFSWEKNPARS-KFYFRDFQALALQPPPSSTYHRGDSEFDVVSKI-PP 60
           M+H+K+ S+ N+PFSWE+ P  S K  F+D     +QP P  + H  DSEFD V KI PP
Sbjct: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQD-----VQPLPLHSVHE-DSEFDDVGKIPPP 60

Query: 61  PPYRQQPRSIRNASAK----EDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSKLFG 120
           PP R QP S+RNAS K    E+DPFL AYKECTKSVK G            V+KKSKLFG
Sbjct: 61  PPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKL----------VAKKSKLFG 116

Query: 121 FSCKSIHSCEIR 127
           F CKS  SCEIR
Sbjct: 121 FLCKSFDSCEIR 116

BLAST of CmoCh03G009380 vs. NCBI nr
Match: KGN48633.1 (hypothetical protein Csa_003745 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 9.9e-19
Identity = 75/132 (56.82%), Postives = 83/132 (62.88%), Query Frame = 0

Query: 3   HRKVLSQRN-LPFSWEKNPARSKFYFRDFQALALQPPPSSTYHR--GDSEFD--VVSKIP 62
           HRK+LSQ N +P   +  P  SK  FRDFQALAL    SS Y    G S+FD  V SKIP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSK--FRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIP 64

Query: 63  PPPYRQQPRSIRNASAKE--DDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSK-LFG 122
           PPP R  P      SAKE  DDPFL+AYKECTKSVKN     +G      V KKSK LFG
Sbjct: 65  PPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKN-----KGINNDVGVVKKSKFLFG 124

Query: 123 -FSCKSIHSCEI 126
            FSCK+IHSC+I
Sbjct: 125 RFSCKTIHSCDI 129

BLAST of CmoCh03G009380 vs. NCBI nr
Match: KAA0036397.1 (hypothetical protein E6C27_scaffold18G001980 [Cucumis melo var. makuwa] >TYK12793.1 hypothetical protein E5676_scaffold255G003820 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-17
Identity = 70/131 (53.44%), Postives = 80/131 (61.07%), Query Frame = 0

Query: 2   NHRKVLSQRNLPFSWEKNPARSKFYFRDFQALA--LQPPPSSTYHRGD-SEFD--VVSKI 61
           +HRKVLSQ N+    +  P  SK  FRDFQALA  L    SSTY   D S+FD  V SKI
Sbjct: 4   HHRKVLSQGNIIPHHQNPPGLSK--FRDFQALALHLHSHSSSTYKNPDASQFDHLVSSKI 63

Query: 62  PPPPYRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSKLF--G 121
           PPPP R  P +  +A  + DDPFL+AYKECTKSVKN      G      V KKSK F   
Sbjct: 64  PPPPCRFPPYNAASAKEELDDPFLVAYKECTKSVKNKGINNLG------VVKKSKFFFGR 123

Query: 122 FSCKSIHSCEI 126
           FSCK+I SC+I
Sbjct: 124 FSCKTIDSCDI 126

BLAST of CmoCh03G009380 vs. NCBI nr
Match: OMO70852.1 (hypothetical protein COLO4_28461 [Corchorus olitorius])

HSP 1 Score: 84.7 bits (208), Expect = 6.2e-13
Identity = 58/136 (42.65%), Postives = 65/136 (47.79%), Query Frame = 0

Query: 1   MNHRKVLSQRNLPFSWEKNPARSKFYFRD-------FQALALQPPPSSTYHRGDSEFDVV 60
           MN  KV SQ N+PFSWE  P   K   +D        Q L   P P  T     S     
Sbjct: 1   MNQTKVHSQGNVPFSWENKPGVCKMTSQDCLKEDFFLQKLPPPPCPPETARVSISNSIQD 60

Query: 61  SKIPPPPYRQQP---RSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKS 120
           +KIPPPP   QP    S R    K DDPFL AYKECTKS   G   +  N G +   KK 
Sbjct: 61  NKIPPPPGAFQPPSRSSSRRGLKKSDDPFLAAYKECTKSTNKGKLAKNVNGGGSGNLKKG 120

Query: 121 KLFGFSCKSIHSCEIR 127
            +F FSCK   SC +R
Sbjct: 121 -VFSFSCK--QSCSVR 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGJ14.8e-1956.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1[more]
A0A5D3CLL99.0e-1853.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1R3HKK63.0e-1342.65Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1[more]
F6I2E01.5e-1240.71Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0541g00010 PE=4 SV=... [more]
W9RVC81.9e-1242.95Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6604109.14.2e-5498.18hypothetical protein SDJN03_04718, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6594957.16.6e-2355.30hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN48633.19.9e-1956.82hypothetical protein Csa_003745 [Cucumis sativus][more]
KAA0036397.11.9e-1753.44hypothetical protein E6C27_scaffold18G001980 [Cucumis melo var. makuwa] >TYK1279... [more]
OMO70852.16.2e-1342.65hypothetical protein COLO4_28461 [Corchorus olitorius][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..73
NoneNo IPR availablePANTHERPTHR33696:SF3SUBFAMILY NOT NAMEDcoord: 1..126
NoneNo IPR availablePANTHERPTHR33696T22J18.15-RELATEDcoord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G009380.1CmoCh03G009380.1mRNA