CmoCh03G008240 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G008240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr03: 6604570 .. 6604821 (+)
RNA-Seq Expression	CmoCh03G008240
Synteny	CmoCh03G008240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATATTGCAATTCTTGTTGCAGAGGAATACGAGAGAAGGATGAAGAATCCAAGGCAAGTGCAGGAGACGCAAAAGCTTGAAGATTTGGGTTCTTGGGTTTCCATCTCTGCAACTGCTTCGGCGATTAGGATGAAGAAGATGATGGAAATAGCAAAACAAAATGCTGAGATGACGGAATTCAAATGGGTTTTCGACCCCAAATCCCAAATTGGCCGAGCCGCTTCCACCGGATTCTTCTCCGCCTGA

mRNA sequence

ATGGCGGATATTGCAATTCTTGTTGCAGAGGAATACGAGAGAAGGATGAAGAATCCAAGGCAAGTGCAGGAGACGCAAAAGCTTGAAGATTTGGGTTCTTGGGTTTCCATCTCTGCAACTGCTTCGGCGATTAGGATGAAGAAGATGATGGAAATAGCAAAACAAAATGCTGAGATGACGGAATTCAAATGGGTTTTCGACCCCAAATCCCAAATTGGCCGAGCCGCTTCCACCGGATTCTTCTCCGCCTGA

Coding sequence (CDS)

ATGGCGGATATTGCAATTCTTGTTGCAGAGGAATACGAGAGAAGGATGAAGAATCCAAGGCAAGTGCAGGAGACGCAAAAGCTTGAAGATTTGGGTTCTTGGGTTTCCATCTCTGCAACTGCTTCGGCGATTAGGATGAAGAAGATGATGGAAATAGCAAAACAAAATGCTGAGATGACGGAATTCAAATGGGTTTTCGACCCCAAATCCCAAATTGGCCGAGCCGCTTCCACCGGATTCTTCTCCGCCTGA

Protein sequence

MADIAILVAEEYERRMKNPRQVQETQKLEDLGSWVSISATASAIRMKKMMEIAKQNAEMTEFKWVFDPKSQIGRAASTGFFSA

Homology

[Close]

BLAST of CmoCh03G008240 vs. ExPASy TrEMBL
Match: A0A0A0KK75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 67/89 (75.28%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQVQE--TQKLEDLG-SWVSISATASAIRMKKMMEIAKQ-- 60
          MADIAILVAEEYERR KNPR+ QE   Q+L++LG S VSISATA++IRMKKMME+AK+  
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 -NAEMTEFKWVFDPKSQIGRAASTGFFSA 84
           +AEM+EF WVF+PKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of CmoCh03G008240 vs. ExPASy TrEMBL
Match: A0A5A7T3Y6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002530 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.9e-22
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQVQE--TQKLEDLGSWVSISATASAIRMKKMMEIAKQN-- 60
          MADIAILVAEEYERR K+PR+ QE   Q+L+DLGS VSISATA++I MKKMME+AK+N  
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLGSGVSISATATSITMKKMMEMAKRNNY 60

Query: 61 -AEMTEFKWVFDPKSQIGRAASTGFFSA 84
           AE++EF  VF+PKSQIGRAASTGFFSA
Sbjct: 61 SAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CmoCh03G008240 vs. ExPASy TrEMBL
Match: A0A1S4DTC5 (uncharacterized protein LOC103485003 OS=Cucumis melo OX=3656 GN=LOC103485003 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.9e-22
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQVQE--TQKLEDLGSWVSISATASAIRMKKMMEIAKQN-- 60
          MADIAILVAEEYERR K+PR+ QE   Q+L+DLGS VSISATA++I MKKMME+AK+N  
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLGSGVSISATATSITMKKMMEMAKRNNY 60

Query: 61 -AEMTEFKWVFDPKSQIGRAASTGFFSA 84
           AE++EF  VF+PKSQIGRAASTGFFSA
Sbjct: 61 SAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CmoCh03G008240 vs. ExPASy TrEMBL
Match: A0A6J1KS29 (uncharacterized protein LOC111497122 OS=Cucurbita maxima OX=3661 GN=LOC111497122 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.3e-21
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQVQE-TQKLEDLGSWVSISATASAIRMKKMMEIAKQNAEM 60
          MADIAILVAEEYERRMKNPRQ ++   +++DL S VSISATAS  R+KKMME+  + AE 
Sbjct: 1  MADIAILVAEEYERRMKNPRQEEKAAAEVQDLVSGVSISATAS--RVKKMMELELELAER 60

Query: 61 TEFKWVFDPKSQIGRAASTGFFSA 84
           EFKWVF+PKSQIGRAASTGFFSA
Sbjct: 61 NEFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of CmoCh03G008240 vs. ExPASy TrEMBL
Match: A0A6J1HEA8 (uncharacterized protein LOC111463202 OS=Cucurbita moschata OX=3662 GN=LOC111463202 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.7e-21
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQVQE-TQKLEDLGSWVSISATASAIRMKKMMEIAKQNAEM 60
          MADIAILVAEEYERRMKNPRQ Q+   +++DL S VSISATAS  R+KKMME+  + A+ 
Sbjct: 1  MADIAILVAEEYERRMKNPRQEQKAAAEVQDLVSGVSISATAS--RVKKMMELELELAQP 60

Query: 61 TEFKWVFDPKSQIGRAASTGFFSA 84
           EFKWVF+PKSQIGRAASTGFFSA
Sbjct: 61 NEFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of CmoCh03G008240 vs. NCBI nr
Match: KAG6604012.1 (hypothetical protein SDJN03_04621, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034176.1 hypothetical protein SDJN02_03903, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 3.0e-32
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQVQETQKLEDLGSWVSISATASAIRMKKMMEIAKQNAEMT 60
          MADIAILVAEEYERRMKNPRQ QETQKLEDL S VSISATASAIRMKKMMEIA QNAEMT
Sbjct: 1  MADIAILVAEEYERRMKNPRQAQETQKLEDLSSGVSISATASAIRMKKMMEIAIQNAEMT 60

Query: 61 EFKWVFDPKSQIGRAASTGFFSA 84
          EFKWVF+PKSQIGRAASTGFFSA
Sbjct: 61 EFKWVFEPKSQIGRAASTGFFSA 83

[Close]

BLAST of CmoCh03G008240 vs. NCBI nr
Match: XP_038882836.1 (uncharacterized protein LOC120073972 [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 8.9e-29
Identity = 69/83 (83.13%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQVQETQKLEDLGSWVSISATASAIRMKKMMEIAKQNAEMT 60
          MADIAILVAEEYERRMKNP QVQE Q+L+DL S VSISATA++IRMKKMME+AKQN++++
Sbjct: 1  MADIAILVAEEYERRMKNPTQVQEKQELQDLASGVSISATATSIRMKKMMEMAKQNSQIS 60

Query: 61 EFKWVFDPKSQIGRAASTGFFSA 84
          EFKWVF+PKSQIGRAASTGFFSA
Sbjct: 61 EFKWVFEPKSQIGRAASTGFFSA 83

[Close]

BLAST of CmoCh03G008240 vs. NCBI nr
Match: XP_011657992.1 (uncharacterized protein LOC105435930 [Cucumis sativus] >KGN48782.1 hypothetical protein Csa_003490 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 9.6e-23
Identity = 67/89 (75.28%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQVQE--TQKLEDLG-SWVSISATASAIRMKKMMEIAKQ-- 60
          MADIAILVAEEYERR KNPR+ QE   Q+L++LG S VSISATA++IRMKKMME+AK+  
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 -NAEMTEFKWVFDPKSQIGRAASTGFFSA 84
           +AEM+EF WVF+PKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of CmoCh03G008240 vs. NCBI nr
Match: XP_016899241.1 (PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo] >KAA0036271.1 uncharacterized protein E6C27_scaffold18G00700 [Cucumis melo var. makuwa] >TYK12665.1 uncharacterized protein E5676_scaffold255G002530 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 8.1e-22
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQVQE--TQKLEDLGSWVSISATASAIRMKKMMEIAKQN-- 60
          MADIAILVAEEYERR K+PR+ QE   Q+L+DLGS VSISATA++I MKKMME+AK+N  
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLGSGVSISATATSITMKKMMEMAKRNNY 60

Query: 61 -AEMTEFKWVFDPKSQIGRAASTGFFSA 84
           AE++EF  VF+PKSQIGRAASTGFFSA
Sbjct: 61 SAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CmoCh03G008240 vs. NCBI nr
Match: XP_023003555.1 (uncharacterized protein LOC111497122 [Cucurbita maxima])

HSP 1 Score: 110.2 bits (274), Expect = 8.9e-21
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQVQE-TQKLEDLGSWVSISATASAIRMKKMMEIAKQNAEM 60
          MADIAILVAEEYERRMKNPRQ ++   +++DL S VSISATAS  R+KKMME+  + AE 
Sbjct: 1  MADIAILVAEEYERRMKNPRQEEKAAAEVQDLVSGVSISATAS--RVKKMMELELELAER 60

Query: 61 TEFKWVFDPKSQIGRAASTGFFSA 84
           EFKWVF+PKSQIGRAASTGFFSA
Sbjct: 61 NEFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of CmoCh03G008240 vs. TAIR 10
Match: AT5G65207.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 8.7e-06
Identity = 35/83 (42.17%), Postives = 43/83 (51.81%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQVQETQKLEDLGSWVSISATASAIRMKKMMEIAKQNAEMT 60
          MADIAILVAEEYERRMK+      +  +E    W  I A  +    K  +E  K+N    
Sbjct: 1  MADIAILVAEEYERRMKHTTVGSRSSPVE-FDWWKIIPAKMTIAFDKMKIESLKKN---- 60

Query: 61 EFKWVFDPKSQIGRAASTGFFSA 84
               F+ KS+   A S GFFSA
Sbjct: 61 -----FEAKSEFALAISHGFFSA 73

The following BLAST results are available for this feature:

BLAST of CmoCh03G008240 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G008240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK75	4.6e-23	75.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1	[more]
A0A5A7T3Y6	3.9e-22	73.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DTC5	3.9e-22	73.86	uncharacterized protein LOC103485003 OS=Cucumis melo OX=3656 GN=LOC103485003 PE=...	[more]
A0A6J1KS29	4.3e-21	73.81	uncharacterized protein LOC111497122 OS=Cucurbita maxima OX=3661 GN=LOC111497122...	[more]
A0A6J1HEA8	5.7e-21	73.81	uncharacterized protein LOC111463202 OS=Cucurbita moschata OX=3662 GN=LOC1114632...	[more]

BLAST of CmoCh03G008240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604012.1	3.0e-32	93.98	hypothetical protein SDJN03_04621, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038882836.1	8.9e-29	83.13	uncharacterized protein LOC120073972 [Benincasa hispida]	[more]
XP_011657992.1	9.6e-23	75.28	uncharacterized protein LOC105435930 [Cucumis sativus] >KGN48782.1 hypothetical ...	[more]
XP_016899241.1	8.1e-22	73.86	PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo] >KAA0036271.1 unc...	[more]
XP_023003555.1	8.9e-21	73.81	uncharacterized protein LOC111497122 [Cucurbita maxima]	[more]

BLAST of CmoCh03G008240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65207.1	8.7e-06	42.17	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36067	EXPRESSED PROTEIN	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G008240.1	CmoCh03G008240.1	mRNA