CmoCh03G007770 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G007770
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionMitochondrial 60S ribosomal protein L6
LocationCmo_Chr03: 6429264 .. 6430599 (+)
RNA-Seq ExpressionCmoCh03G007770
SyntenyCmoCh03G007770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGAGGCAAGTGTTGCCAGATTACCTACCCAGCTCTTATTATTTATCCGATTATGTTTACCCCATTTTTCGGCTGGAAATTTGTGGGTTAATGTAATTCGGTGGGGTTATGTCTATGGTAGAAGAACTGAAAATTTATTCAAATGTATATTTGATTATTGATGTATTAATATCAAGGAAATTTTGGATGTATGTTTTTAATTTATAGTTGAAGAATTATTTTAGCATAGTGTGCGAAAAGAATTGGGGTTGATCGAGTTTATATGATGTATTTGAAAGTGGACTTACCATTTCTCTCATAATTTTGTTAAGTCTTTCAAGTTTTTTAGACTGAAGACCAATTAAGTTCTTTCCATCCTTATTTTAGCTATCAGCTATCACTGTCACAGGGAAAATTTTAATATCAAATGATTAGGAATCACTACTAAGAAAATAAGATTCGAATAATTTGGTTGATTGAATGTCTGAAGGCAAATCATGTCTGAATTAAGACACCTTATTTTGTATCATTTCCTCCTAAATCTGTGTTAGACTACTTATATCTTTGCAATTCTACATCACCTTATGGAAACTAATTGGATTTTTGTCGTTAATTAATGGTAAACACTCATCTTTTTGGAAGAGTGCTTTACTTGTTTGAAAATGAAATTTGAACTTGGAAGCATATTGTTCTAAGAATTCATCTCAAATAGACAGTAAAACGTTTCAGGCAGCCTTCATTTCCTAATGCATGCATTTTCCGGTACAAATTTGTAGTTGTCCTTTCATTCAGTCAATCCTTCAATCTCTAAATAGGAAGAAAGCATGTTGAATAATCACGGGAATTGGCGGAAGTTTGTTAACAAGAAAATATGGGTAGATATTGAACATGGAAAATGATCATTACAACTCAAAACACAGGCAAGAGTTAACCCTCAACTCTAATATGCTTCTTTCCTGCATGATTTGCCAACTCCAACATATTGGATCAATGGGATAACATTTCAAGAATAGGCATTGTAGCAACCAAATTTCAGTCACATGGCTTAATCTATGGAATGCTCTAAAGGTATGCATACAATAAACCCAATTATTCTTAACTGAGGCACTCTGTGTCTGAATAAAGATGGATGCGAGGCATTTTTTCGTTCCCGGCATCTATTTAGACTTCTTTCCTTGTTTCTTTTTTATGACCTCGTCGATATACATTATGCCCTTGCCTTTGTATACTTCTGGCGGCTTACAGCTACGAACTGCAGCAGCAAATTGGTGCACCCTTTGTTTGTCAATACCCGTGCAGCAAACCACATTGTTTTTGAAGCAAAAGACACGAACAGCTGGTGGAACGGTTAG

mRNA sequence

ATGGATGGAGGCAAGTGTTGCCAGATTACCTACCCAGCTCTTATTATTTATCCGATTATGTTTACCCCATTTTTCGGCTGGAAATTTAATAGGCATTGTAGCAACCAAATTTCAGTCACATGGCTTAATCTATGGAATGCTCTAAAGGCATTTTTTCGTTCCCGGCATCTATTTAGACTTCTTTCCTTGTTTCTTTTTTATGACCTCGTCGATATACATTATGCCCTTGCCTTTGTATACTTCTGGCGGCTTACAGCTACGAACTGCAGCAGCAAATTGGTGCACCCTTTGTTTGTCAATACCCGTGCAGCAAACCACATTGTTTTTGAAGCAAAAGACACGAACAGCTGGTGGAACGGTTAG

Coding sequence (CDS)

ATGGATGGAGGCAAGTGTTGCCAGATTACCTACCCAGCTCTTATTATTTATCCGATTATGTTTACCCCATTTTTCGGCTGGAAATTTAATAGGCATTGTAGCAACCAAATTTCAGTCACATGGCTTAATCTATGGAATGCTCTAAAGGCATTTTTTCGTTCCCGGCATCTATTTAGACTTCTTTCCTTGTTTCTTTTTTATGACCTCGTCGATATACATTATGCCCTTGCCTTTGTATACTTCTGGCGGCTTACAGCTACGAACTGCAGCAGCAAATTGGTGCACCCTTTGTTTGTCAATACCCGTGCAGCAAACCACATTGTTTTTGAAGCAAAAGACACGAACAGCTGGTGGAACGGTTAG

Protein sequence

MDGGKCCQITYPALIIYPIMFTPFFGWKFNRHCSNQISVTWLNLWNALKAFFRSRHLFRLLSLFLFYDLVDIHYALAFVYFWRLTATNCSSKLVHPLFVNTRAANHIVFEAKDTNSWWNG
Homology
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BLAST of CmoCh03G007770 vs. ExPASy TrEMBL
Match: A0A0A8Y083 (Mitochondrial 60S ribosomal protein L6 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 68  DLVDIHYALAFVYFWRLTATNCSSKLVHPLFVNTRAANHIVFEAKDTNSWWNG 121
           + +D+ YA + V+ WR  A N + KL+H + VN  AA+++ FEA+D +S W+G
Sbjct: 32  NFIDVQYAFSLVHLWRFAALNNAGKLMHSIVVNAGAADYVGFEAEDADSRWSG 84

The following BLAST results are available for this feature:
BLAST of CmoCh03G007770 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G007770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A8Y0832.4e-0441.51Mitochondrial 60S ribosomal protein L6 OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of CmoCh03G007770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh03G007770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G007770.1CmoCh03G007770.1mRNA