CmoCh03G007420 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G007420
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L7/L12
LocationCmo_Chr03: 6288117 .. 6291121 (-)
RNA-Seq ExpressionCmoCh03G007420
SyntenyCmoCh03G007420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTCCGAAGCCCAACTAAAAAGCCCACCGGCGAATTAACTGCATGCTTGCTTGAATCTCAACGGTAGGGTTTATGCTTCTCCCCGGAATCTGAACGACGGCAGGCGATCTACATTCCACCTCCAAACTCATTAACCATGGACGCACAGAGCTCTCATTGTCTCACTGTACTTTCTGACTGAACATTCACGATTTACCGAATAATTTGAAGATGAGAAATCTGCGAATTTTTTCTCCTCAGTTCTCGAGGATTCGGAGAACCTTCATTCAATACCCTTGCTCTGATTCTCCGTCCATTCGATATTTAAATTTTCTTGGATCGGGGAGTTTTGCGTCTTCATCATCGCTGAATCATCGGAATTTCACAACTGCTTCACTGGAATCAAGACCAGCCCATTCGGAGAGAGTTTCGGGCATTGTGGATGAGATCTCCGGTCTCACGCTACTCGATGTTGCGGACCTCACGGAGGTGCTACGAGGCAAATTGGATGTAAAGGATATGCCGGTAATGGCGGTGATGATGCCTGGGATGGGATTTGGTGGCTTGCAAGGTGTTGGTAAGGGTGGTCTTGGAGCGAAAGGCGGTGAGGAGAAAAAGACGGAGAAGACAGCGTTCGATGTGAAGCTTGAAGCGTTTGATGCTGCGTCGAAGATAAAGGTGATTAAGGAAGTACGAACGTTTACGAATTTGGGGTTGAAGGAGGCTAAAGATTTGGTGGAGAAAGCGCCTATGCTCCTGAAGAAGGGAGTGACAAAGGAGGAAGCTGATACGATTATTGCCAAGATGAAGGAGGTTGGCGCCAAAGTCTCAGTGGAGTGAGGTACTACTGTCTCCTTCCTTTTGTATATTAGAACGAGTCTCAGGTTTTAACCTAGACGTTGTACACCTCGAGCATAAATTCTCATGATTTAGAGACAATATCGTATCAAAAGGCTCTATAGCAATGGAGATGGAGATGTATTCCTTACTTGAAAACTTATGATCAACCCCTTAATTAGTCGATTTGGAATTCCTCTCCCAACAATCTTCCGCATATCATAATATGGACCACATTACCTATCTTAGTTTTTGCGCATTTAGCAAGACGTTATCGGGAGTTTCTCTAAATAATTGGGTATGTTTTGGGGTTGGCCTCATGGAGACCAATCTTGATGATCTTTAATCTACGTTCCTATTTGTGATCCTTAGCAGAAGAAGTTGATCCTTACTCCGGAGCTCCTAAACTTGTCTCGAGTGTTATAAGTATGATGATGATTTCTATAGAATGTAGTGCATTTGCCTAACTTGAGGGAGGGGTCCTTGATTGAGTTGGATTTGGAGACACATAAGTGTGTAGTCAAGGAAGAGATTATCCAGTTCTATAAACTAGCCCGGAGCTGCCAAGTGACCTGAGTATCTGCTCTGTTTTCTCTCTTTCTGGAGAAATTCTAGGACTTTGAGTTGAGATAAGAAAGGGTGTACAGTTTGGAAGGGAGAAGATTTATCCAATTATGTAAGTGCGACATTCCACATTGATTGGAGAGGAAAATGAAACATTCCTTGTAAGGGTGTGGAAATATCTCCCTAGTAGATGTGTTTTAAAACTGTGAGATTGACGACGATACGTAACGAACTAAAGTAGACAATATCTGCTAGCTGTGGGCTTGAGCCGTTACAAATGATTCAGAGCTAGACACTAGGTGGTGTGTCAGCTGCCCCTAAGAGGAGTGAATTGTGAGATTCCACATCGGTTGGAGAGGAGAACAAAGCATTCTATGTTAGGGTGTGGAAACATCTCCCCAATAGACACGCTTTAAAATCGTAAGGCTGGTGATGATACATAACGAGATAACGTAGATAGCGGTGGGCTAAAGCGGCCCAAACACAGTAAGTGTAACATAACTACACTTAAACTTGGGAGCTACCCAATGACCTGAGTGCGTGGGCTTTTAGGAAGCACCAAGAAAAATAAACATAAGAGTTGATAGTTATAGCAGATGACGAACCTTTGAATGCTATACTTTGTTGACATCTTGTTTGATTCATTTCATCTTCTTATTGAAGCTTTATGGCTTATGCATATCTGGTACAATAGGGTGTTGAAATTTTCTGAGCAGAATCATTACTAGTTGAGATAAATAAGCTCATACAAATTCTCATTTATCCATCCATCTTCTAGTTACCTCATCTTTGGACTATCAAAATTGATTGGGAGATCATAGAAATATTCTTATTCCTATAAACGTTAGTAAAGTCGATAAAAACCTTATTTAACATTGTTGAAACATGAGGCAATGTTATGGTCAGTTTTTTTTACTTCAAAGTTTCATATATTGTCATTAGACCAGGACTGTTCATTGGCAGAAAGTTGACTTTTAGAGAGAGCTCCCAAATCACCTAAAGCAGAAGTCTTCATCCGATGACTTTGAGACTAAAGAGTGTCTAACGCCAATTAGTCATGTTTATCGATATCACTGAAGCATGTTAGCACAACACACGTTTAAGCTGCAGTGGTCTATTCTATCTATTATTCTGCATGCTTTGTTTCTTATGATTATGGCTTTGGCTACTTCTTCTGCGAACATCTGTTATTTATTCATCACCATTGCTGCTATAACGCGTGCAAGTCAAATCATTGTATCCGTACTTGGGATTACTTATTTGTAATTCCATTCGGTTCTTTTACCAACAGAATGCTGCAGAAAATGCAAAGCTTTTATCACACTTTTCAAGTCAGAGCAACAGTTGAGGATATAGCAATGTGTCTTGAAGTTCGTTTGGATGGATGAGGGCATGGATTTATTTGGTTTGGTTCAAAAATATAAAGAGCATTCTTTATTAGAACTTTCCATATTCTTGCCTCGACCCGAAATTATATTTGTTGATAGATGTTTCTTGGTACTTGGCTTTTGTATTCGTAGGTTCCAAATAACTTAGAACACCACTCATTGAAGATCAGTCTTGTCGGAAGAACAAATCACCTGCTTCATTTTCCACTTTTAATGCAAATCCTTTTGTTCATTTC

mRNA sequence

GATTCCGAAGCCCAACTAAAAAGCCCACCGGCGAATTAACTGCATGCTTGCTTGAATCTCAACGGTAGGGTTTATGCTTCTCCCCGGAATCTGAACGACGGCAGGCGATCTACATTCCACCTCCAAACTCATTAACCATGGACGCACAGAGCTCTCATTGTCTCACTGTACTTTCTGACTGAACATTCACGATTTACCGAATAATTTGAAGATGAGAAATCTGCGAATTTTTTCTCCTCAGTTCTCGAGGATTCGGAGAACCTTCATTCAATACCCTTGCTCTGATTCTCCGTCCATTCGATATTTAAATTTTCTTGGATCGGGGAGTTTTGCGTCTTCATCATCGCTGAATCATCGGAATTTCACAACTGCTTCACTGGAATCAAGACCAGCCCATTCGGAGAGAGTTTCGGGCATTGTGGATGAGATCTCCGGTCTCACGCTACTCGATGTTGCGGACCTCACGGAGGTGCTACGAGGCAAATTGGATGTAAAGGATATGCCGGTAATGGCGGTGATGATGCCTGGGATGGGATTTGGTGGCTTGCAAGGTGTTGGTAAGGGTGGTCTTGGAGCGAAAGGCGGTGAGGAGAAAAAGACGGAGAAGACAGCGTTCGATGTGAAGCTTGAAGCGTTTGATGCTGCGTCGAAGATAAAGGTGATTAAGGAAGTACGAACGTTTACGAATTTGGGGTTGAAGGAGGCTAAAGATTTGGTGGAGAAAGCGCCTATGCTCCTGAAGAAGGGAGTGACAAAGGAGGAAGCTGATACGATTATTGCCAAGATGAAGGAGGTTGGCGCCAAAGTCTCAGTGGAGTGAAATGCTGCAGAAAATGCAAAGCTTTTATCACACTTTTCAAGTCAGAGCAACAGTTGAGGATATAGCAATGTGTCTTGAAGTTCGTTTGGATGGATGAGGGCATGGATTTATTTGGTTTGGTTCAAAAATATAAAGAGCATTCTTTATTAGAACTTTCCATATTCTTGCCTCGACCCGAAATTATATTTGTTGATAGATGTTTCTTGGTACTTGGCTTTTGTATTCGTAGGTTCCAAATAACTTAGAACACCACTCATTGAAGATCAGTCTTGTCGGAAGAACAAATCACCTGCTTCATTTTCCACTTTTAATGCAAATCCTTTTGTTCATTTC

Coding sequence (CDS)

ATGAGAAATCTGCGAATTTTTTCTCCTCAGTTCTCGAGGATTCGGAGAACCTTCATTCAATACCCTTGCTCTGATTCTCCGTCCATTCGATATTTAAATTTTCTTGGATCGGGGAGTTTTGCGTCTTCATCATCGCTGAATCATCGGAATTTCACAACTGCTTCACTGGAATCAAGACCAGCCCATTCGGAGAGAGTTTCGGGCATTGTGGATGAGATCTCCGGTCTCACGCTACTCGATGTTGCGGACCTCACGGAGGTGCTACGAGGCAAATTGGATGTAAAGGATATGCCGGTAATGGCGGTGATGATGCCTGGGATGGGATTTGGTGGCTTGCAAGGTGTTGGTAAGGGTGGTCTTGGAGCGAAAGGCGGTGAGGAGAAAAAGACGGAGAAGACAGCGTTCGATGTGAAGCTTGAAGCGTTTGATGCTGCGTCGAAGATAAAGGTGATTAAGGAAGTACGAACGTTTACGAATTTGGGGTTGAAGGAGGCTAAAGATTTGGTGGAGAAAGCGCCTATGCTCCTGAAGAAGGGAGTGACAAAGGAGGAAGCTGATACGATTATTGCCAAGATGAAGGAGGTTGGCGCCAAAGTCTCAGTGGAGTGA

Protein sequence

MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRPAHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGLGAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGVTKEEADTIIAKMKEVGAKVSVE
Homology
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BLAST of CmoCh03G007420 vs. ExPASy Swiss-Prot
Match: Q9USJ9 (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl12 PE=3 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-18
Identity = 65/177 (36.72%), Postives = 105/177 (59.32%), Query Frame = 0 

Query: 26  SPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRPAHSERVSGIVDEISGLTLLDVADLT 85
           S   R L  L S    + S +N R+F  A+  S   ++ ++  +VD+IS L+LL+ ++L 
Sbjct: 6   SRQTRNLRALSSSKNWARSLVNTRSFRAAA--SVQNNNAQIGEMVDKISSLSLLETSELV 65

Query: 86  EVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGLGAKGGEEKKTEKTAFDVKLEAFDAA 145
           + L+ KL++ ++  MA + P +               K  EEKK EKT +++KLE+FDA 
Sbjct: 66  KQLKEKLNIAEIAPMAAVAPAV-------ASAAPSEEKAPEEKKEEKTTWNLKLESFDAG 125

Query: 146 SKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGVTKEEADTIIAKMKEVGAKVSVE 203
           SK KVIKEV++   L L +AK  VE AP +LK+ + KE+A+ I +K++++  KV +E
Sbjct: 126 SKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAEAIKSKLEKLSCKVVLE 173

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BLAST of CmoCh03G007420 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.8e-17
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 0 

Query: 63  SERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGLGA 122
           S++   I+D +  L+LL+ ++L + +     V       V+M   G GG         GA
Sbjct: 2   SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAGG---------GA 61

Query: 123 KGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGVTK 182
               E   EKT FDV LE+FDAA+KIKV+KEVR  T LGL EAK +VE AP  +K+G +K
Sbjct: 62  SAAGEAAEEKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASK 121

Query: 183 EEADTIIAKMKEVGAKVSVE 203
           E+A+ +   ++ VG KV+++
Sbjct: 122 EDAEALKKAIEAVGGKVTLK 132

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BLAST of CmoCh03G007420 vs. ExPASy Swiss-Prot
Match: B0CAD2 (50S ribosomal protein L7/L12 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplL PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-16
Identity = 56/134 (41.79%), Postives = 78/134 (58.21%), Query Frame = 0 

Query: 69  IVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGLGAKGGEEK 128
           I++++  LTLL+ ADL + +     V   P   VMM   G G          GA GGEE 
Sbjct: 7   ILEKLKSLTLLEAADLVKQIEETFGVSAAPAAGVMMAAPGAG----------GAAGGEEA 66

Query: 129 KTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGVTKEEADTI 188
           + EKT FDV LE   +  KI V+K VRT T LGLKEAK++VE  P  +K+GV+KE+A+  
Sbjct: 67  E-EKTEFDVVLEEVPSDKKIAVLKVVRTLTGLGLKEAKEMVESTPKSIKEGVSKEDAEEA 126

Query: 189 IAKMKEVGAKVSVE 203
              +++ G K S++
Sbjct: 127 KKSLEDAGGKASLK 129

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BLAST of CmoCh03G007420 vs. ExPASy Swiss-Prot
Match: A2C031 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=167555 GN=rplL PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.5e-16
Identity = 57/140 (40.71%), Postives = 81/140 (57.86%), Query Frame = 0 

Query: 63  SERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGLGA 122
           S +   I+D +  L+LL+ ++L + +     V       V+M         G   GG GA
Sbjct: 2   SAKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVM------AAPGAAAGGDGA 61

Query: 123 KGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGVTK 182
              E    EKT F+V LE+FDA+SKIKV+KEVR  T LGL EAK LVE AP  +K+G TK
Sbjct: 62  DAAE----EKTEFEVVLESFDASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIKEGATK 121

Query: 183 EEADTIIAKMKEVGAKVSVE 203
           E+A+ +   ++ VG KV+++
Sbjct: 122 EDAEALKKAIEAVGGKVTLK 131

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BLAST of CmoCh03G007420 vs. ExPASy Swiss-Prot
Match: Q7U3T9 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) OX=84588 GN=rplL PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.5e-16
Identity = 56/142 (39.44%), Postives = 84/142 (59.15%), Query Frame = 0 

Query: 63  SERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMM--PGMGFGGLQGVGKGGL 122
           S +   I++ +  L+LL+ ++L + +     V       V+M  PG   GG         
Sbjct: 2   SAKTDEILESLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAAGG--------- 61

Query: 123 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 182
              GG E   EKT FDV LE+FDAA+KIKV+K VR  T LGL +AK LVE AP  +K+G+
Sbjct: 62  ---GGGEVAEEKTEFDVILESFDAAAKIKVLKAVRNATGLGLGDAKALVEAAPKPIKEGI 121

Query: 183 TKEEADTIIAKMKEVGAKVSVE 203
           +K+EA+ +  +++EVG KV+++
Sbjct: 122 SKDEAEALKKEIEEVGGKVTLK 131

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BLAST of CmoCh03G007420 vs. ExPASy TrEMBL
Match: A0A6J1GDL5 (uncharacterized protein LOC111453206 OS=Cucurbita moschata OX=3662 GN=LOC111453206 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.6e-101
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 

Query: 1   MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP 60
           MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP
Sbjct: 1   MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP 60

Query: 61  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 120
           AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL
Sbjct: 61  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 120

Query: 121 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 180
           GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV
Sbjct: 121 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 180

Query: 181 TKEEADTIIAKMKEVGAKVSVE 203
           TKEEADTIIAKMKEVGAKVSVE
Sbjct: 181 TKEEADTIIAKMKEVGAKVSVE 202

[Close]
BLAST of CmoCh03G007420 vs. ExPASy TrEMBL
Match: A0A6J1IV51 (uncharacterized protein LOC111478830 OS=Cucurbita maxima OX=3661 GN=LOC111478830 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.0e-92
Identity = 189/202 (93.56%), Postives = 193/202 (95.54%), Query Frame = 0 

Query: 1   MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP 60
           MRNLRIFS QFSRIRRTF+QYPCSDSPSIRYLNFLGSGSF   +SLNHRN+TTAS ESRP
Sbjct: 12  MRNLRIFSHQFSRIRRTFVQYPCSDSPSIRYLNFLGSGSF---TSLNHRNYTTASPESRP 71

Query: 61  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 120
           AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKG  
Sbjct: 72  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGSP 131

Query: 121 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 180
           G KGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAP+LLKKGV
Sbjct: 132 GVKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPVLLKKGV 191

Query: 181 TKEEADTIIAKMKEVGAKVSVE 203
           TKEEADTIIAKMKEVGAKVS E
Sbjct: 192 TKEEADTIIAKMKEVGAKVSAE 210

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BLAST of CmoCh03G007420 vs. ExPASy TrEMBL
Match: A0A6J1BSG1 (uncharacterized protein LOC111005287 OS=Momordica charantia OX=3673 GN=LOC111005287 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.7e-82
Identity = 176/202 (87.13%), Postives = 179/202 (88.61%), Query Frame = 0 

Query: 1   MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP 60
           MR LRI SP FSRI RTF Q PC DS S   LN LG GS ASSS LNHRN+TTAS ESRP
Sbjct: 1   MRYLRILSPHFSRICRTFAQTPCCDSSSTHSLNLLGLGSLASSSLLNHRNYTTASPESRP 60

Query: 61  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 120
           A SERVS IVDEISGLTLL+VADLTEVLR KLDVKDMPVMAVMMPGMGFGGLQG GKGG 
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAGKGGP 120

Query: 121 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 180
           GAKGGEEKK EKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAP LLKKGV
Sbjct: 121 GAKGGEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGV 180

Query: 181 TKEEADTIIAKMKEVGAKVSVE 203
           TKEEADTIIAKMKEVGAKVS+E
Sbjct: 181 TKEEADTIIAKMKEVGAKVSME 202

[Close]
BLAST of CmoCh03G007420 vs. ExPASy TrEMBL
Match: A0A0A0KMA8 (50S ribosomal protein L7/L12 OS=Cucumis sativus OX=3659 GN=Csa_6G504570 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.9e-80
Identity = 167/202 (82.67%), Postives = 181/202 (89.60%), Query Frame = 0 

Query: 1   MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP 60
           MRNLRI SP FSRIR+TF Q P SDSPS R++NF G  +FAS SS+NHRN+TTAS ESRP
Sbjct: 1   MRNLRILSPHFSRIRKTFAQNPSSDSPSTRHINFPGLETFASPSSVNHRNYTTASPESRP 60

Query: 61  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 120
           A SERVS IVDEISGLTLL+VADLTEVLR KLDVK+MPVM +MMPGMGFGG +G GKGG 
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKEMPVMTMMMPGMGFGGFRGAGKGGP 120

Query: 121 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 180
           GAKG EEKK EKTAFDVKL+AFDAASKIK+IKEVRTFTNLGLKEAKDLVEKAP LLKKGV
Sbjct: 121 GAKGVEEKKEEKTAFDVKLDAFDAASKIKIIKEVRTFTNLGLKEAKDLVEKAPTLLKKGV 180

Query: 181 TKEEADTIIAKMKEVGAKVSVE 203
           TKEEA+TIIAKMKEVGAKVS+E
Sbjct: 181 TKEEAETIIAKMKEVGAKVSME 202

[Close]
BLAST of CmoCh03G007420 vs. ExPASy TrEMBL
Match: A0A5A7SN88 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001680 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.2e-79
Identity = 167/202 (82.67%), Postives = 180/202 (89.11%), Query Frame = 0 

Query: 1   MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP 60
           MRNLR FS  FSRIRRTF Q P S SPS R++N  G  +FASSSS+NHRN+TTAS ESRP
Sbjct: 1   MRNLRFFSSHFSRIRRTFAQNPSSVSPSTRHINLPGLETFASSSSVNHRNYTTASPESRP 60

Query: 61  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 120
           A SERVS IVDEISGLTLL+VADLTEVLR KLDVK+MPVM +MMPG GFGG+QG GKGG 
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKEMPVMTIMMPGTGFGGVQGAGKGGP 120

Query: 121 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 180
           GAKGGEEKK EKTAFDVKLEAFDAASKIK+IKEVRTFT+LGLKEAKDLVEKAP LLKKGV
Sbjct: 121 GAKGGEEKKEEKTAFDVKLEAFDAASKIKIIKEVRTFTSLGLKEAKDLVEKAPTLLKKGV 180

Query: 181 TKEEADTIIAKMKEVGAKVSVE 203
           TKEEA+TIIAKMKEVGAKVS+E
Sbjct: 181 TKEEAETIIAKMKEVGAKVSME 202

[Close]
BLAST of CmoCh03G007420 vs. NCBI nr
Match: XP_022949973.1 (uncharacterized protein LOC111453206 [Cucurbita moschata] >KAG6603937.1 hypothetical protein SDJN03_04546, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 377.1 bits (967), Expect = 9.5e-101
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 

Query: 1   MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP 60
           MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP
Sbjct: 1   MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP 60

Query: 61  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 120
           AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL
Sbjct: 61  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 120

Query: 121 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 180
           GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV
Sbjct: 121 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 180

Query: 181 TKEEADTIIAKMKEVGAKVSVE 203
           TKEEADTIIAKMKEVGAKVSVE
Sbjct: 181 TKEEADTIIAKMKEVGAKVSVE 202

[Close]
BLAST of CmoCh03G007420 vs. NCBI nr
Match: XP_023543178.1 (uncharacterized protein LOC111803128 [Cucurbita pepo subsp. pepo] >XP_023543179.1 uncharacterized protein LOC111803128 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.1 bits (897), Expect = 1.2e-92
Identity = 193/202 (95.54%), Postives = 195/202 (96.53%), Query Frame = 0 

Query: 1   MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP 60
           MRNLRIFSPQFSRIRRT    PCSDSPSIRYLNFL SGSFASSSSLN RN+TTAS ESRP
Sbjct: 12  MRNLRIFSPQFSRIRRT----PCSDSPSIRYLNFLVSGSFASSSSLNPRNYTTASPESRP 71

Query: 61  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 120
           AHSERVSGIVDEISGLTLLDVADLTEVL+GKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL
Sbjct: 72  AHSERVSGIVDEISGLTLLDVADLTEVLQGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 131

Query: 121 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 180
           GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV
Sbjct: 132 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 191

Query: 181 TKEEADTIIAKMKEVGAKVSVE 203
           TKEEADTIIAKMKEVGAKVSVE
Sbjct: 192 TKEEADTIIAKMKEVGAKVSVE 209

[Close]
BLAST of CmoCh03G007420 vs. NCBI nr
Match: XP_022979088.1 (uncharacterized protein LOC111478830 [Cucurbita maxima])

HSP 1 Score: 349.4 bits (895), Expect = 2.1e-92
Identity = 189/202 (93.56%), Postives = 193/202 (95.54%), Query Frame = 0 

Query: 1   MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP 60
           MRNLRIFS QFSRIRRTF+QYPCSDSPSIRYLNFLGSGSF   +SLNHRN+TTAS ESRP
Sbjct: 12  MRNLRIFSHQFSRIRRTFVQYPCSDSPSIRYLNFLGSGSF---TSLNHRNYTTASPESRP 71

Query: 61  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 120
           AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKG  
Sbjct: 72  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGSP 131

Query: 121 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 180
           G KGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAP+LLKKGV
Sbjct: 132 GVKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPVLLKKGV 191

Query: 181 TKEEADTIIAKMKEVGAKVSVE 203
           TKEEADTIIAKMKEVGAKVS E
Sbjct: 192 TKEEADTIIAKMKEVGAKVSAE 210

[Close]
BLAST of CmoCh03G007420 vs. NCBI nr
Match: XP_022132430.1 (uncharacterized protein LOC111005287 [Momordica charantia])

HSP 1 Score: 315.5 bits (807), Expect = 3.4e-82
Identity = 176/202 (87.13%), Postives = 179/202 (88.61%), Query Frame = 0 

Query: 1   MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP 60
           MR LRI SP FSRI RTF Q PC DS S   LN LG GS ASSS LNHRN+TTAS ESRP
Sbjct: 1   MRYLRILSPHFSRICRTFAQTPCCDSSSTHSLNLLGLGSLASSSLLNHRNYTTASPESRP 60

Query: 61  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 120
           A SERVS IVDEISGLTLL+VADLTEVLR KLDVKDMPVMAVMMPGMGFGGLQG GKGG 
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAGKGGP 120

Query: 121 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 180
           GAKGGEEKK EKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAP LLKKGV
Sbjct: 121 GAKGGEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGV 180

Query: 181 TKEEADTIIAKMKEVGAKVSVE 203
           TKEEADTIIAKMKEVGAKVS+E
Sbjct: 181 TKEEADTIIAKMKEVGAKVSME 202

[Close]
BLAST of CmoCh03G007420 vs. NCBI nr
Match: XP_038881033.1 (50S ribosomal protein L7/L12 [Benincasa hispida])

HSP 1 Score: 315.1 bits (806), Expect = 4.5e-82
Identity = 174/202 (86.14%), Postives = 181/202 (89.60%), Query Frame = 0 

Query: 1   MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP 60
           MR LR FS  FSRIRRTF Q PCSDSPS    + LG  S+ASSSSLNHRNFTTAS ESRP
Sbjct: 1   MRYLRTFSTHFSRIRRTFAQNPCSDSPSTLNFDLLGLESYASSSSLNHRNFTTASPESRP 60

Query: 61  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 120
           A SE+VS IVDEISGLTLL+VADLTEVLR KLDVK+MPVMAVMMPGMGFGGLQG GKGG 
Sbjct: 61  APSEKVSAIVDEISGLTLLEVADLTEVLRQKLDVKEMPVMAVMMPGMGFGGLQGAGKGGP 120

Query: 121 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 180
           GAKGGEEKK EKTAFDVKLEAFDAASKIK+IKEVRTFTNLGLKEAKDLVEKAP LLKKGV
Sbjct: 121 GAKGGEEKKAEKTAFDVKLEAFDAASKIKIIKEVRTFTNLGLKEAKDLVEKAPTLLKKGV 180

Query: 181 TKEEADTIIAKMKEVGAKVSVE 203
           TKEEADTIIAKMKEVGAKVS+E
Sbjct: 181 TKEEADTIIAKMKEVGAKVSME 202

[Close]
BLAST of CmoCh03G007420 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-41
Identity = 108/202 (53.47%), Postives = 131/202 (64.85%), Query Frame = 0 

Query: 1   MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNFTTASLESRP 60
           MRNLRI S  FSR+ ++                     +   SSS+      + S  S  
Sbjct: 1   MRNLRIISSHFSRVLKS---------------------TETRSSSVQLFTIQSRSYSSPA 60

Query: 61  AHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKGGL 120
             SE VS IV+E+S LTLL+  DLTE+LR KL++ ++PVMA MMPGM   G  G  K   
Sbjct: 61  TQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPG-SGASKSA- 120

Query: 121 GAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKKGV 180
           G +G E+KK  KTAFDV L+A+DA SKIKVIKEVRT T LGLKEAKDLVEKAP LLKKGV
Sbjct: 121 GGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGV 179

Query: 181 TKEEADTIIAKMKEVGAKVSVE 203
           +KEEA+ II K+K VGAKV++E
Sbjct: 181 SKEEAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of CmoCh03G007420 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-31
Identity = 75/148 (50.68%), Postives = 110/148 (74.32%), Query Frame = 0 

Query: 57  ESRPAHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVG 116
           E R   ++RV  +VDEIS LTLL++++L  ++  K  + ++P +AVM PG G GG+   G
Sbjct: 62  EHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAG-GGVGVGG 121

Query: 117 KGGLGAKGG--EEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPM 176
            GG+ ++ G  EE K EKT F++KLE+F+A++KIK+IKE+R+FT+LGLKEAK LVEK P 
Sbjct: 122 GGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPA 181

Query: 177 LLKKGVTKEEADTIIAKMKEVGAKVSVE 203
           +LK G++KEE + I+ K+K +GAKV +E
Sbjct: 182 ILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of CmoCh03G007420 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-31
Identity = 75/148 (50.68%), Postives = 110/148 (74.32%), Query Frame = 0 

Query: 57  ESRPAHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVG 116
           E R   ++RV  +VDEIS LTLL++++L  ++  K  + ++P +AVM PG G GG+   G
Sbjct: 62  EHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAG-GGVGVGG 121

Query: 117 KGGLGAKGG--EEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPM 176
            GG+ ++ G  EE K EKT F++KLE+F+A++KIK+IKE+R+FT+LGLKEAK LVEK P 
Sbjct: 122 GGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPA 181

Query: 177 LLKKGVTKEEADTIIAKMKEVGAKVSVE 203
           +LK G++KEE + I+ K+K +GAKV +E
Sbjct: 182 ILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of CmoCh03G007420 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 104.8 bits (260), Expect = 8.5e-23
Identity = 68/144 (47.22%), Postives = 89/144 (61.81%), Query Frame = 0 

Query: 59  RPAHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKG 118
           RP  S ++  + + I+ L+  +   +   L   L +        M+   G G  Q  G G
Sbjct: 53  RPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQ----MISSDGIGAKQDTGAG 112

Query: 119 GLGAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKK 178
            +      E+K EKTAFDVKLE F+A+ KIKVIKEVRTFT+LGLKEAK+LVEK P +LK+
Sbjct: 113 NV------EEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQ 172

Query: 179 GVTKEEADTIIAKMKEVGAKVSVE 203
           GVTKEEA+ IIAK+K VG    +E
Sbjct: 173 GVTKEEANEIIAKIKAVGGIAVME 186

[Close]
BLAST of CmoCh03G007420 vs. TAIR 10
Match: AT3G06040.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 104.8 bits (260), Expect = 8.5e-23
Identity = 68/144 (47.22%), Postives = 89/144 (61.81%), Query Frame = 0 

Query: 59  RPAHSERVSGIVDEISGLTLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFGGLQGVGKG 118
           RP  S ++  + + I+ L+  +   +   L   L +        M+   G G  Q  G G
Sbjct: 53  RPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQ----MISSDGIGAKQDTGAG 112

Query: 119 GLGAKGGEEKKTEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPMLLKK 178
            +      E+K EKTAFDVKLE F+A+ KIKVIKEVRTFT+LGLKEAK+LVEK P +LK+
Sbjct: 113 NV------EEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQ 172

Query: 179 GVTKEEADTIIAKMKEVGAKVSVE 203
           GVTKEEA+ IIAK+K VG    +E
Sbjct: 173 GVTKEEANEIIAKIKAVGGIAVME 186

The following BLAST results are available for this feature:
BLAST of CmoCh03G007420 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9USJ91.6e-1836.7254S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
A9BDG46.8e-1740.0050S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=930... [more]
B0CAD22.0e-1641.7950S ribosomal protein L7/L12 OS=Acaryochloris marina (strain MBIC 11017) OX=3297... [more]
A2C0317.5e-1640.7150S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=16755... [more]
Q7U3T97.5e-1639.4450S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) OX=84588 GN=rp... [more]
BLAST of CmoCh03G007420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GDL54.6e-101100.00uncharacterized protein LOC111453206 OS=Cucurbita moschata OX=3662 GN=LOC1114532... [more]
A0A6J1IV511.0e-9293.56uncharacterized protein LOC111478830 OS=Cucurbita maxima OX=3661 GN=LOC111478830... [more]
A0A6J1BSG11.7e-8287.13uncharacterized protein LOC111005287 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A0A0KMA85.9e-8082.6750S ribosomal protein L7/L12 OS=Cucumis sativus OX=3659 GN=Csa_6G504570 PE=3 SV=... [more]
A0A5A7SN882.2e-7982.6750S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
BLAST of CmoCh03G007420 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949973.19.5e-101100.00uncharacterized protein LOC111453206 [Cucurbita moschata] >KAG6603937.1 hypothet... [more]
XP_023543178.11.2e-9295.54uncharacterized protein LOC111803128 [Cucurbita pepo subsp. pepo] >XP_023543179.... [more]
XP_022979088.12.1e-9293.56uncharacterized protein LOC111478830 [Cucurbita maxima][more]
XP_022132430.13.4e-8287.13uncharacterized protein LOC111005287 [Momordica charantia][more]
XP_038881033.14.5e-8286.1450S ribosomal protein L7/L12 [Benincasa hispida][more]
BLAST of CmoCh03G007420 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G36420.11.4e-4153.47Ribosomal protein L12 family protein [more]
AT1G70190.12.9e-3150.68Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT1G70190.22.9e-3150.68Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT3G06040.18.5e-2347.22Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT3G06040.28.5e-2347.22Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036235Ribosomal protein L7/L12, oligomerisation domain superfamilyGENE3D1.20.5.710Single helix bincoord: 66..131
e-value: 3.3E-6
score: 29.0
IPR036235Ribosomal protein L7/L12, oligomerisation domain superfamilySUPERFAMILY48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 67..137
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 132..201
e-value: 4.1E-24
score: 86.5
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 131..201
IPR000206Ribosomal protein L7/L12TIGRFAMTIGR00855TIGR00855coord: 68..201
e-value: 4.6E-25
score: 86.4
IPR000206Ribosomal protein L7/L12PANTHERPTHR4598739S RIBOSOMAL PROTEIN L12coord: 39..202
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 63..202
score: 17.820349
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 64..201
e-value: 5.53353E-47
score: 148.843
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 69..106
e-value: 1.2E-8
score: 34.5
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 135..201
e-value: 4.3E-24
score: 84.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G007420.1CmoCh03G007420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome