CmoCh03G007290 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G007290
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr03: 6241713 .. 6243357 (+)
RNA-Seq ExpressionCmoCh03G007290
SyntenyCmoCh03G007290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGAGGAAGGGGTTGTGGGGTTCTTTTGGTTGTTGGAATTGTGTTGAGCTTGTATTTGGTTGAGGGGGTGAAGGGTTTTGAAAGAAGTGGCAGTGTGGGTGCATCCAATGAATGGTCTGAGTTGGATGGAAGCCTGTTTGGAGGAGTTGGTGTAAGCGGGAGAAATGCGACTGTTAATGGTGGGAGAGATTCGGTTAAGCGTGGAATTACGAATGGTGGCGGGGGAGGAGGAGGAGGAGGAGGAGGAGGCGGTGGTGGTGGTGGAGAGGGAAGTGGGGTTGGGGTAAGAAAGAAAGATACGAAACATAGTAAAAAACATGGAAAAGGGGGAAGTGGCGGCGGTGGGGGAGGTGGAGGTGGAAAAGGCTATGGATGGGGAGGAGGAGGTGGCGGAGGTGGAGGGGGAGGAGGGGGAGGAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAGGAGGAGGGGGAGGAGGGGGAGGAGGTGGTGGTGGAGGAGGAGGAGGGGGAGGCGGAGGCGGAGGAAGTGGTGGAGGTTGGGGTTTTGGCGGCGGAGGGAGTAGGAGTTTTTGTTGGATATGGGGATGTGGCGGCGGTGATGGGAGGAAAGCAGGGCCTAGAAAAGAAGGCCCGAGAGAGTAG

mRNA sequence

ATGGAGAGAGGAAGGGGTTGTGGGGTTCTTTTGGTTGTTGGAATTGTGTTGAGCTTGTATTTGGTTGAGGGGGTGAAGGGTTTTGAAAGAAGTGGCAGTGTGGGTGCATCCAATGAATGGTCTGAGTTGGATGGAAGCCTGTTTGGAGGAGTTGGTGTAAGCGGGAGAAATGCGACTGTTAATGGTGGGAGAGATTCGGTTAAGCGTGGAATTACGAATGGTGGCGGGGGAGGAGGAGGAGGAGGAGGAGGAGGCGGTGGTGGTGGTGGAGAGGGAAGTGGGGTTGGGGTAAGAAAGAAAGATACGAAACATAGTAAAAAACATGGAAAAGGGGGAAGTGGCGGCGGTGGGGGAGGTGGAGGTGGAAAAGGCTATGGATGGGGAGGAGGAGGTGGCGGAGGAGGTGGTGGTGGAGGAGGAGGAGGGGGAGGCGGAGGCGGAGGAAGTGGTGGAGGTTGGGGTTTTGGCGGCGGAGGGAGTAGGAGTTTTTGTTGGATATGGGGATGTGGCGGCGGTGATGGGAGGAAAGCAGGGCCTAGAAAAGAAGGCCCGAGAGAGTAG

Coding sequence (CDS)

ATGGAGAGAGGAAGGGGTTGTGGGGTTCTTTTGGTTGTTGGAATTGTGTTGAGCTTGTATTTGGTTGAGGGGGTGAAGGGTTTTGAAAGAAGTGGCAGTGTGGGTGCATCCAATGAATGGTCTGAGTTGGATGGAAGCCTGTTTGGAGGAGTTGGTGTAAGCGGGAGAAATGCGACTGTTAATGGTGGGAGAGATTCGGTTAAGCGTGGAATTACGAATGGTGGCGGGGGAGGAGGAGGAGGAGGAGGAGGAGGCGGTGGTGGTGGTGGAGAGGGAAGTGGGGTTGGGGTAAGAAAGAAAGATACGAAACATAGTAAAAAACATGGAAAAGGGGGAAGTGGCGGCGGTGGGGGAGGTGGAGGTGGAAAAGGCTATGGATGGGGAGGAGGAGGTGGCGGAGGAGGTGGTGGTGGAGGAGGAGGAGGGGGAGGCGGAGGCGGAGGAAGTGGTGGAGGTTGGGGTTTTGGCGGCGGAGGGAGTAGGAGTTTTTGTTGGATATGGGGATGTGGCGGCGGTGATGGGAGGAAAGCAGGGCCTAGAAAAGAAGGCCCGAGAGAGTAG

Protein sequence

MERGRGCGVLLVVGIVLSLYLVEGVKGFERSGSVGASNEWSELDGSLFGGVGVSGRNATVNGGRDSVKRGITNGGGGGGGGGGGGGGGGGEGSGVGVRKKDTKHSKKHGKGGSGGGGGGGGGKGYGWGGGGGGGGGGGGGGGGGGGGGSGGGWGFGGGGSRSFCWIWGCGGGDGRKAGPRKEGPRE
Homology
BLAST of CmoCh03G007290 vs. ExPASy TrEMBL
Match: A0A6J1ILV4 (putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111477646 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.8e-44
Identity = 149/186 (80.11%), Postives = 151/186 (81.18%), Query Frame = 0

Query: 1   MERGRGCGVLLVVGIVLSLYLVEGVKGFERSGSVGASNEWSELDGSLFGGVGVSGRNATV 60
           MERGR CGVLLVVGIVLSL LVEG+KGFERSGSV  SNEWSELDGSLFGGVGVSGRNATV
Sbjct: 1   MERGRVCGVLLVVGIVLSLSLVEGLKGFERSGSVDTSNEWSELDGSLFGGVGVSGRNATV 60

Query: 61  NGGRDSVKRGITNGGGGGGGGGGGGGGGGGEGSGVGVRKKDTKHSKKHGKGGSGGGGGGG 120
           NGG DSVKRGITN GGGGGGGGGGGGGGGGEGSGVG         +K   G    G    
Sbjct: 61  NGGSDSVKRGITN-GGGGGGGGGGGGGGGGEGSGVGAEVAAVGEVEKAMDGEVAEGEE-- 120

Query: 121 GGKGYGWGGGGGGGGGGGGGGGGGGGGGSGGGWGFGGGGSRSFCWIWGCGGGDGRKAGPR 180
                  G  GGGGGGGGGGGGGGGGGGSGGGWGFGGGGSRSFCWIWGCGGGDGRKAGPR
Sbjct: 121 -------GEXGGGGGGGGGGGGGGGGGGSGGGWGFGGGGSRSFCWIWGCGGGDGRKAGPR 176

Query: 181 KEGPRE 187
           KEGPRE
Sbjct: 181 KEGPRE 176

BLAST of CmoCh03G007290 vs. ExPASy TrEMBL
Match: A0A0A0KGL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504700 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.2e-08
Identity = 97/158 (61.39%), Postives = 110/158 (69.62%), Query Frame = 0

Query: 1   MERGRGCGVLLVVGIVL-SLYLVEG--VKGFERSGSVGA-SNEWSELDGSLFGGVGVSGR 60
           M+  RG GVLL +GIVL S+YLVEG  VK F+ + SVG+ SN WS+L+ SL       GR
Sbjct: 1   MKSERGSGVLLFLGIVLISIYLVEGKEVKSFKINESVGSTSNGWSDLNESL------RGR 60

Query: 61  NATVNGGRDSVKRGITNGGGGGGGGGGGGGGGGGEGSGVGVRKKDTKHSKKHGKGGSGGG 120
           N T++GG+          GG    G G GGGGGG GS VGVRKKDTKH+KKHGK G+GGG
Sbjct: 61  NMTISGGK----------GGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGNGGG 120

Query: 121 GGGGGGKGYGWGGGGGGGGGGGGGGGGGGGGGSGGGWG 155
           GGGGGG G   GGGGGGG GGGGGGGGGGG G G GWG
Sbjct: 121 GGGGGGNG---GGGGGGGAGGGGGGGGGGGNGKGYGWG 139

BLAST of CmoCh03G007290 vs. ExPASy TrEMBL
Match: A0A067FY63 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028209mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-05
Identity = 106/210 (50.48%), Postives = 119/210 (56.67%), Query Frame = 0

Query: 1   MERGRGCGV-LLVVGIVLSLYLVEGVKGFERSGSVGASNEWSELDGSLFGGVGVSGRNAT 60
           ME  RG G  LL++  VLS YLV G+  FE S +    N  S    SL G   V      
Sbjct: 1   METARGFGAFLLLLAAVLSSYLVCGLHSFEESENAVKFNASSNSKLSLEGNNVVEDNQLD 60

Query: 61  VNGGRDSVKRG--ITNGGGGGGGGGGGGGGG----GGEGSGVGVRKKDTKHSKKHGKG-- 120
                DS K G  + NGGGG GGGGGGGGGG    GG   G G + K   H +K GKG  
Sbjct: 61  RRNTLDSSKGGSHMNNGGGGAGGGGGGGGGGGAGNGGGNGGGGGKGKHKPHKRKGGKGNG 120

Query: 121 -----GSGGGGGGGG---GKGYGW----------------GGGGGGGGGGGGGGGGGGGG 178
                GSGGGGGGGG   GKG+GW                GGGGGGGGG GGGGGGGGGG
Sbjct: 121 GGRGSGSGGGGGGGGGNSGKGHGWGGGSGGGGGGGGGGKGGGGGGGGGGNGGGGGGGGGG 180

BLAST of CmoCh03G007290 vs. NCBI nr
Match: KAG6603927.1 (hypothetical protein SDJN03_04536, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247.7 bits (631), Expect = 8.0e-62
Identity = 180/213 (84.51%), Postives = 182/213 (85.45%), Query Frame = 0

Query: 1   MERGRGCGVLLVVGIVLSLYLVEGVKGFERSGSVGASNEWSELDGSLFGGVGVSGRNATV 60
           MERGRGCGVLLVVGIVLSLYLVEGVKGFERSG VGASNEWS+LDG  F GVGVSGRNATV
Sbjct: 39  MERGRGCGVLLVVGIVLSLYLVEGVKGFERSGRVGASNEWSKLDGRPFEGVGVSGRNATV 98

Query: 61  NGGRDSVKRGITNGGGGGGGGGGGGGGG----GGEGSGVGVRKKDTKHSKKHGKGGS--G 120
           NGGRDSVKRGITNGGGGGGGGGGGGGGG    GGEGSGVGVRKKDTKHSKKHGKGG+  G
Sbjct: 99  NGGRDSVKRGITNGGGGGGGGGGGGGGGGGGAGGEGSGVGVRKKDTKHSKKHGKGGNGGG 158

Query: 121 GGGGGGGGKGYGWGGGGGGGGGGG---------------------GGGGGGGGGGSGGGW 180
           GGGGGGGGKGYGWGGGGGGGGGGG                     GGGGGGGGGGSGGGW
Sbjct: 159 GGGGGGGGKGYGWGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGSGGGGGGGGGGSGGGW 218

Query: 181 GFGGGGSRSFCWIWGCGGGDGRKAGPRKEGPRE 187
           GFGGGGSRSFCWIWGCGGGDGRKAGPRKEGPRE
Sbjct: 219 GFGGGGSRSFCWIWGCGGGDGRKAGPRKEGPRE 251

BLAST of CmoCh03G007290 vs. NCBI nr
Match: XP_022977280.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita maxima])

HSP 1 Score: 188.3 bits (477), Expect = 5.8e-44
Identity = 149/186 (80.11%), Postives = 151/186 (81.18%), Query Frame = 0

Query: 1   MERGRGCGVLLVVGIVLSLYLVEGVKGFERSGSVGASNEWSELDGSLFGGVGVSGRNATV 60
           MERGR CGVLLVVGIVLSL LVEG+KGFERSGSV  SNEWSELDGSLFGGVGVSGRNATV
Sbjct: 1   MERGRVCGVLLVVGIVLSLSLVEGLKGFERSGSVDTSNEWSELDGSLFGGVGVSGRNATV 60

Query: 61  NGGRDSVKRGITNGGGGGGGGGGGGGGGGGEGSGVGVRKKDTKHSKKHGKGGSGGGGGGG 120
           NGG DSVKRGITN GGGGGGGGGGGGGGGGEGSGVG         +K   G    G    
Sbjct: 61  NGGSDSVKRGITN-GGGGGGGGGGGGGGGGEGSGVGAEVAAVGEVEKAMDGEVAEGEE-- 120

Query: 121 GGKGYGWGGGGGGGGGGGGGGGGGGGGGSGGGWGFGGGGSRSFCWIWGCGGGDGRKAGPR 180
                  G  GGGGGGGGGGGGGGGGGGSGGGWGFGGGGSRSFCWIWGCGGGDGRKAGPR
Sbjct: 121 -------GEXGGGGGGGGGGGGGGGGGGSGGGWGFGGGGSRSFCWIWGCGGGDGRKAGPR 176

Query: 181 KEGPRE 187
           KEGPRE
Sbjct: 181 KEGPRE 176

BLAST of CmoCh03G007290 vs. NCBI nr
Match: XP_024036172.1 (putative glycine-rich cell wall structural protein 1 [Citrus clementina])

HSP 1 Score: 58.2 bits (139), Expect = 9.0e-05
Identity = 107/217 (49.31%), Postives = 121/217 (55.76%), Query Frame = 0

Query: 1   MERGRGCGV-LLVVGIVLSLYLVEGVKGFERSGSVGASNEWSELDGSLFGGVGVSGRNAT 60
           ME  RG G  LL++  VLS YLV G+  FE S +    N  S    SL G   V      
Sbjct: 1   METARGFGAFLLLLAAVLSSYLVCGLHSFEESENAVKFNASSNSKLSLEGNNVVEDNQLD 60

Query: 61  VNGGRDSVKRG--ITNGGGGGGGGGGGGGGG----GGEGSGVGVRKKDTKHSKKHGKG-- 120
                DS K G  + NGGGG GGGGGGGGGG    GG   G G + K   H +K GKG  
Sbjct: 61  RRNTLDSSKGGSHMNNGGGGAGGGGGGGGGGGAGNGGGNGGGGGKGKHKPHKRKGGKGNG 120

Query: 121 -----GSGGGGGGGG---GKGYGW----------------GGGGGGGGGGGGGGGGGGGG 180
                GSGGGGGGGG   GKG+GW                GGGGGGGGG GGGGGGGGGG
Sbjct: 121 GGRGSGSGGGGGGGGGNSGKGHGWGGGSGGGGGGGGGGKGGGGGGGGGGNGGGGGGGGGG 180

Query: 181 GSGGGWGFGGGGSRSFCWIWGCGGGDGRKAGPRKEGP 185
           G GGGWG+GGGG+ + CW+WGCGGG  RK+   +  P
Sbjct: 181 GHGGGWGWGGGGNGN-CWLWGCGGGGHRKSARGRVAP 216

BLAST of CmoCh03G007290 vs. NCBI nr
Match: KDO71085.1 (hypothetical protein CISIN_1g028209mg [Citrus sinensis])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 106/210 (50.48%), Postives = 119/210 (56.67%), Query Frame = 0

Query: 1   MERGRGCGV-LLVVGIVLSLYLVEGVKGFERSGSVGASNEWSELDGSLFGGVGVSGRNAT 60
           ME  RG G  LL++  VLS YLV G+  FE S +    N  S    SL G   V      
Sbjct: 1   METARGFGAFLLLLAAVLSSYLVCGLHSFEESENAVKFNASSNSKLSLEGNNVVEDNQLD 60

Query: 61  VNGGRDSVKRG--ITNGGGGGGGGGGGGGGG----GGEGSGVGVRKKDTKHSKKHGKG-- 120
                DS K G  + NGGGG GGGGGGGGGG    GG   G G + K   H +K GKG  
Sbjct: 61  RRNTLDSSKGGSHMNNGGGGAGGGGGGGGGGGAGNGGGNGGGGGKGKHKPHKRKGGKGNG 120

Query: 121 -----GSGGGGGGGG---GKGYGW----------------GGGGGGGGGGGGGGGGGGGG 178
                GSGGGGGGGG   GKG+GW                GGGGGGGGG GGGGGGGGGG
Sbjct: 121 GGRGSGSGGGGGGGGGNSGKGHGWGGGSGGGGGGGGGGKGGGGGGGGGGNGGGGGGGGGG 180

BLAST of CmoCh03G007290 vs. NCBI nr
Match: XP_015389986.2 (putative glycine-rich cell wall structural protein 1 [Citrus sinensis])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 106/210 (50.48%), Postives = 119/210 (56.67%), Query Frame = 0

Query: 1   MERGRGCGV-LLVVGIVLSLYLVEGVKGFERSGSVGASNEWSELDGSLFGGVGVSGRNAT 60
           ME  RG G  LL++  VLS YLV G+  FE S +    N  S    SL G   V      
Sbjct: 30  METARGFGAFLLLLAAVLSSYLVCGLHSFEESENAVKFNASSNSKLSLEGNNVVEDNQLD 89

Query: 61  VNGGRDSVKRG--ITNGGGGGGGGGGGGGGG----GGEGSGVGVRKKDTKHSKKHGKG-- 120
                DS K G  + NGGGG GGGGGGGGGG    GG   G G + K   H +K GKG  
Sbjct: 90  RRNTLDSSKGGSHMNNGGGGAGGGGGGGGGGGAGNGGGNGGGGGKGKHKPHKRKGGKGNG 149

Query: 121 -----GSGGGGGGGG---GKGYGW----------------GGGGGGGGGGGGGGGGGGGG 178
                GSGGGGGGGG   GKG+GW                GGGGGGGGG GGGGGGGGGG
Sbjct: 150 GGRGSGSGGGGGGGGGNSGKGHGWGGGSGGGGGGGGGGKGGGGGGGGGGNGGGGGGGGGG 209

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ILV42.8e-4480.11putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661... [more]
A0A0A0KGL87.2e-0861.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504700 PE=4 SV=1[more]
A0A067FY635.7e-0550.48Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028209mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6603927.18.0e-6284.51hypothetical protein SDJN03_04536, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022977280.15.8e-4480.11putative glycine-rich cell wall structural protein 1 [Cucurbita maxima][more]
XP_024036172.19.0e-0549.31putative glycine-rich cell wall structural protein 1 [Citrus clementina][more]
KDO71085.11.2e-0450.48hypothetical protein CISIN_1g028209mg [Citrus sinensis][more]
XP_015389986.21.2e-0450.48putative glycine-rich cell wall structural protein 1 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..186

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G007290.1CmoCh03G007290.1mRNA