CmoCh03G006920 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G006920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	UPF0434 protein
Location	Cmo_Chr03: 6051153 .. 6054193 (-)
RNA-Seq Expression	CmoCh03G006920
Synteny	CmoCh03G006920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAGAAACTCAAACCGGGAAAAATTGAATCCAGCTAATGGTGCGAATAAGCCAATCGCTTCTGAAGGAAGCGGGCTCTGGTCTCACCAAAACTCTCTCCGAGATCCTGGTCTGCCCTCTCTCCAAACAACCTCTAAGGTGATGGTTCCATTTGAATTCATCATTTTTTCCTTCATTCTCCTCAATCTGTTGTGCATAATTTGGTTTCATTGTCTGTTTTGATCATTAGGTATTGCGAGGCGTCGAATTCTCTAATCAGCGATACGATTCGTGTTTCTTTCCCTGTAAGTACATCAACATCGGCTTCAATTGTGCAAAATATGAATTCCAGTATAATTCTTCGCCTATGGCCATTTTCTGTTTTTTCATTCTGATTTTCCTTTTCGATACTAGCTCTCGGTTCATTTTTTTGGTCATCTAGAGTGCGTAGCTGCTATTCGACTTGCTAGCGAAAGCTTACGTTAACTCTTGAGTCATATTAAGACCTACCTACTGGTAGATCAAGACATTCCTTGGTTTCATTAGTTTAATGAAGTATTTCTCAGTTTTTCTGGATTAGGTAGTAAAAATGGCTGTGGGAACCAGAAAGTAGTGTTCAAACCCTCCCTTCATCCGTGGAGTTAGGTTATATAGGTCATGTGCCTGTTTCTATTGTATGTTGTAATTTTACTTATGGTTGTGTTAGATAAGGGGCGGAGTTCCTTGCTTGGTGCCAAAGGAAGGAAGGATAATCGAAACTGACGATGGATTGAAAGGTGAGGATACCGTCGAGATTCCTCGAGAAAAATGAGCTATGCTTGTTTGGGAGCGGAAGACAATTTTTATTTCTTGAGCTGAATAGTGAGAATAGATGTCAACCTAATGGCACTACACCTGTGTGTTTATGCTTTGAAGTTTCCACTTTAGAATGATTTGAATGGTCTCATTTCCTGAAAATTTCTGGCGTTGCCCAATAAAATAGTCAGATCAGACTACTTGTCCATCTTTCTTTTGTACTCTTTTCTAGCGATTGGGGTAGGTTAAACAGAATATCTAATTTTTTCTGCTTAAAACTTTTGGGCTTGTGTTGAATTGTCTGAGGGTGAATCGTTTCTTTAGCTTTTACTGACATGGAAGGGCATCGTTGGATGATCATCTCTTTAGTTCTCGGAAAATAAACTTTCGTGTTCAGATCAAGTCAACCATGATCTCCTTTACATTGTTCTGTTTGGGTTAGGACACACGCCAGTTTGGTAAACATCGGGTTGTTCTATGTAAAAACACGGTGTGCATGGTATGGAACATGCTAAGGACAACGAAATTATTACTTATTATAGTTGATTACATGTTCGGCATGAATGTAAGTGGTTCATCATAGGAAAGTTTTTTTAGTTTATCTTGCATGTTCATCATAATCACAATTATGATGAAGAAAGTGCGTTCAATATTCAATAGTTATCAACTCAACGATAATTAGCATGTACTCTCTCGGGGTCGAAAGTTCAAATCTTTATGCCCACTTGTTAGCATCGTTAGATTAAGATTTCTTCATACTATTGTCTAGTGGTTGTTCACCAGTTGTTCCAAGCCTTCAATTTAGTCTTAGGTTTAAGTTGGACACCATTTCTCCAGATATTTTTTTGATCTATCTTTCTTTAGGTCCTATCTTAGGAGCACTTGCATATCCTTTTATGGGGACGCTGGCATATCTCAATCAAGTTTCCTTTATGAAATGGTTATCATTTTTATCAAGTTAGCCGATGGGGTATAGCAGCTTATGTGCTCCAGGCATTTGACACTATAACTTGAAAGGTCAAGTGTAGTAATCTTGTTTAGGTGCAACCACTGTCTTTGAAATTTGAGGGTCTCCTTTCTCAATCTAACTACCATTCCTCAAACACAATTACCCCCTACTATTAAAGCACTATAATCAATTATCCTTCTTACCTTTAACTGAATGGAGTGCAGGACGATATTCTCCTCCTGCTATAACTTCATTGTCCTCGGATTGTTTCCAGGTATCAAAGATGCATTATCATGTGGTGATGTTATTGATTCATGTTTTATGAAGAGGGCCAAGGAGGAAGGTTGTGAAACTTCAGCACATCCAACCTTGGATGATGCTGCTATGGAGAGGGAGTGGTGTTCTGTGTGTTTGTCAAACGTAATGGAGAGAAAGGTAGCGCAAATTCTTCCTTGTCAGCACGAGTTTCACAAGATATGCGTCGAGAGGTGGTTTCATGAATGCCAGAATCAGAAAACTTGCTCAATTTGTCGGTTTTGGGTGAGCGATGAAGATTGTCAACCAACAGAAGTGCTTACAGAGGAGATGGTAATATGGTCCACATCTTTACATGTTATCGATTACTAAACTGAACTGAAAGTTCTCGTCTATTTCCTCGGGTACCTAATAACCTTAGAGAGGGAGACAGAGAGAGTTCATGCGAGAAAACAATGGTTTGTGTTACATTCGGGAGAAATGCAGCACTATTAACTGGTATTGCAAATTCCCATTTTCATAAATATTTGTTCCAAACCGTATCAAATAAAATAAAGATATCTCGAGCAAAATAATATCAACCTCCGAAGTTCCTAATGCAGCATTTAAAGTTGGAAGGTATTTATAGAGCAAATGACAGGGAAAGTTTCCTAAAATACAATAACAAAAGATGGAAAGAAGAACCTTCAAGATAGAAGAACGTCAGTTGCAACCCAGCCTCCACAATATCCAACAAAAGCCAACCAACCTCTCTTGATTCACCTTGCAGAAACAAAAAGCCAAACCTTCTAGTTCTTACTCGAATCATCGTGTTCTCTCATCTTAGAACTCGAAGTACTCTGACCCCGAAGATATAAAGAAAAAACAAGCTGAGGGGCAGCCAGAGGGAAGCAAATCAAAATTCTCCACATTAAGTAACATGCCATCATCATTCATCACCAAAAACGAAAATCACAACAAAAAAGAACATGAACTTGAGAAACAAGTCATGCCAGCCAGCCAGCCAGCCAACAGCAGCCCACAAAACCATAAATGCATCCCTCCACCACAAAAGGAACTTCTG

mRNA sequence

AGCAGAAACTCAAACCGGGAAAAATTGAATCCAGCTAATGGTGCGAATAAGCCAATCGCTTCTGAAGGAAGCGGGCTCTGGTCTCACCAAAACTCTCTCCGAGATCCTGGTCTGCCCTCTCTCCAAACAACCTCTAAGGTATTGCGAGGCGTCGAATTCTCTAATCAGCGATACGATTCGTGTTTCTTTCCCTATAAGGGGCGGAGTTCCTTGCTTGGTGCCAAAGGAAGGAAGGATAATCGAAACTGACGATGGATTGAAAGGTATCAAAGATGCATTATCATGTGGTGATGTTATTGATTCATGTTTTATGAAGAGGGCCAAGGAGGAAGGTTGTGAAACTTCAGCACATCCAACCTTGGATGATGCTGCTATGGAGAGGGAGTGGTGTTCTGTGTGTTTGTCAAACGTAATGGAGAGAAAGGTAGCGCAAATTCTTCCTTGTCAGCACGAGTTTCACAAGATATGCGTCGAGAGGTGGTTTCATGAATGCCAGAATCAGAAAACTTGCTCAATTTGTCGGTTTTGGGTGAGCGATGAAGATTGTCAACCAACAGAAGTGCTTACAGAGGAGATGGTAATATGGTCCACATCTTTACATGTTATCGATTACTAAACTGAACTGAAAGTTCTCGTCTATTTCCTCGGGTACCTAATAACCTTAGAGAGGGAGACAGAGAGAGTTCATGCGAGAAAACAATGGTTTGTGTTACATTCGGGAGAAATGCAGCACTATTAACTGGTATTGCAAATTCCCATTTTCATAAATATTTGTTCCAAACCGTATCAAATAAAATAAAGATATCTCGAGCAAAATAATATCAACCTCCGAAGTTCCTAATGCAGCATTTAAAGTTGGAAGGTATTTATAGAGCAAATGACAGGGAAAGTTTCCTAAAATACAATAACAAAAGATGGAAAGAAGAACCTTCAAGATAGAAGAACGTCAGTTGCAACCCAGCCTCCACAATATCCAACAAAAGCCAACCAACCTCTCTTGATTCACCTTGCAGAAACAAAAAGCCAAACCTTCTAGTTCTTACTCGAATCATCGTGTTCTCTCATCTTAGAACTCGAAGTACTCTGACCCCGAAGATATAAAGAAAAAACAAGCTGAGGGGCAGCCAGAGGGAAGCAAATCAAAATTCTCCACATTAAGTAACATGCCATCATCATTCATCACCAAAAACGAAAATCACAACAAAAAAGAACATGAACTTGAGAAACAAGTCATGCCAGCCAGCCAGCCAGCCAACAGCAGCCCACAAAACCATAAATGCATCCCTCCACCACAAAAGGAACTTCTG

Coding sequence (CDS)

ATGGTGCGAATAAGCCAATCGCTTCTGAAGGAAGCGGGCTCTGGTCTCACCAAAACTCTCTCCGAGATCCTGGTCTGCCCTCTCTCCAAACAACCTCTAAGGTATTGCGAGGCGTCGAATTCTCTAATCAGCGATACGATTCGTGTTTCTTTCCCTATAAGGGGCGGAGTTCCTTGCTTGGTGCCAAAGGAAGGAAGGATAATCGAAACTGACGATGGATTGAAAGGTATCAAAGATGCATTATCATGTGGTGATGTTATTGATTCATGTTTTATGAAGAGGGCCAAGGAGGAAGGTTGTGAAACTTCAGCACATCCAACCTTGGATGATGCTGCTATGGAGAGGGAGTGGTGTTCTGTGTGTTTGTCAAACGTAATGGAGAGAAAGGTAGCGCAAATTCTTCCTTGTCAGCACGAGTTTCACAAGATATGCGTCGAGAGGTGGTTTCATGAATGCCAGAATCAGAAAACTTGCTCAATTTGTCGGTTTTGGGTGAGCGATGAAGATTGTCAACCAACAGAAGTGCTTACAGAGGAGATGGTAATATGGTCCACATCTTTACATGTTATCGATTACTAA

Protein sequence

MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCLVPKEGRIIETDDGLKGIKDALSCGDVIDSCFMKRAKEEGCETSAHPTLDDAAMEREWCSVCLSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCSICRFWVSDEDCQPTEVLTEEMVIWSTSLHVIDY

Homology

[Close]

BLAST of CmoCh03G006920 vs. ExPASy Swiss-Prot
Match: Q0BWC7 (UPF0434 protein HNE_3545 OS=Hyphomonas neptunium (strain ATCC 15444) OX=228405 GN=HNE_3545 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.5e-09
Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 7  SLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCLVPKEGR 66
          S+L EA +G+   L EIL+CP ++QPL Y  A + L+S   R+++PIRGG+P ++ +E R
Sbjct: 13 SVLFEA-NGVDPRLLEILICPATRQPLAYDRARHELVSKNARLAYPIRGGIPIMLEEEAR 72

Query: 67 IIETDDGLKG 77
           ++  +G  G
Sbjct: 73 DLDDTEGTAG 81

[Close]

BLAST of CmoCh03G006920 vs. ExPASy Swiss-Prot
Match: Q5M8Z2 (Protein preY, mitochondrial OS=Xenopus tropicalis OX=8364 GN=pyurf PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.5e-08
Identity = 24/53 (45.28%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 19  TLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCLVPKEGRIIETD 72
           TL + LVCPLS++ LRY E++N LI+D + +++PI  G+P ++P++ R+I  D
Sbjct: 58  TLLQFLVCPLSRKSLRYEESTNELINDELGIAYPIVDGIPNMIPQDARMIHKD 110

[Close]

BLAST of CmoCh03G006920 vs. ExPASy Swiss-Prot
Match: A4YK44 (UPF0434 protein BRADO0313 OS=Bradyrhizobium sp. (strain ORS 278) OX=114615 GN=BRADO0313 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-07
Identity = 25/61 (40.98%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 9  LKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCLVPKEGRII 68
          L+   + +   L EILVCP++K PL Y  A   LIS + ++++PIR G+P ++P+E R I
Sbjct: 5  LERPANSVDPKLLEILVCPMTKGPLEYDAARQELISRSAKLAYPIRDGIPIMLPEEARKI 64

Query: 69 E 70
          +
Sbjct: 65 D 65

[Close]

BLAST of CmoCh03G006920 vs. ExPASy Swiss-Prot
Match: Q5FFA6 (UPF0434 protein ERGA_CDS_01260 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=ERGA_CDS_01260 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.9e-07
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 16 LTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCLVPKEGRIIE 70
          + K L EILVCPL+K+ L Y + +N LIS   +++FPIR G+P ++  E R +E
Sbjct: 2  IDKKLLEILVCPLTKEKLEYNKDTNELISQKAKLAFPIRNGIPIMLVDEARKLE 55

[Close]

BLAST of CmoCh03G006920 vs. ExPASy Swiss-Prot
Match: Q5HC42 (UPF0434 protein Erum1340/ERWE_CDS_01300 OS=Ehrlichia ruminantium (strain Welgevonden) OX=254945 GN=Erum1340 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.9e-07
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 16 LTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCLVPKEGRIIE 70
          + K L EILVCPL+K+ L Y + +N LIS   +++FPIR G+P ++  E R +E
Sbjct: 2  IDKKLLEILVCPLTKEKLEYNKDTNELISQKAKLAFPIRNGIPIMLVDEARKLE 55

[Close]

BLAST of CmoCh03G006920 vs. ExPASy TrEMBL
Match: A0A6J1IJV3 (uncharacterized protein LOC111477769 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477769 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 7.8e-82
Identity = 156/192 (81.25%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
           MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFP+       
Sbjct: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPVS------ 60

Query: 61  VPKEGRIIETDDGLKGIKDALSCGDVIDSCFMKRAKEEGCETSAHPTLDDAAMEREWCSV 120
                            K     GDVIDS FMKRAKEEGCETSAHPTLDDAA+EREWCSV
Sbjct: 61  -----------------KMHYHVGDVIDSYFMKRAKEEGCETSAHPTLDDAAIEREWCSV 120

Query: 121 CLSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCSICRFWVSDEDCQPTEVLTEEM 180
           C SNVMERKVAQILPCQHEFHKICVERWFHECQNQKTC IC+FWV DEDCQPTEVLTEEM
Sbjct: 121 CFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQFWVRDEDCQPTEVLTEEM 169

Query: 181 VIWSTSLHVIDY 193
           VIWSTSLHVIDY
Sbjct: 181 VIWSTSLHVIDY 169

[Close]

BLAST of CmoCh03G006920 vs. ExPASy TrEMBL
Match: A0A6A1UIA7 (Protein preY, mitochondrial OS=Morella rubra OX=262757 GN=CJ030_MR0G008870 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 9.3e-43
Identity = 105/230 (45.65%), Postives = 132/230 (57.39%), Query Frame = 0


Query: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
           MVR S +LLK+AG+GL KTLSEILVCPLSKQPLRYC  +NSLISD + VSFPI+ G+PCL
Sbjct: 1   MVRASIALLKDAGNGLCKTLSEILVCPLSKQPLRYCVETNSLISDAVGVSFPIKDGIPCL 60

Query: 61  VPKEGRIIETDDGLK---GIKDALSCGDVIDSCFMKRAKEEGCETSAHPTLDDAAME--- 120
           VPK+G+IIE DD L       D+ S G V+ S F            A P L +A      
Sbjct: 61  VPKDGKIIEADDMLNTDDEESDSGSSGAVV-SQFQAEPSFRLIGLRAQPALKEAPSSSYS 120

Query: 121 -------------------------------REWCSVCLSNVMERKVAQILPCQHEFHKI 180
                                           + C VCLS + + +  +ILPC HEFHK+
Sbjct: 121 VINWDDLDEVKEDPTMSARGSSSSSGEVHEGEQQCCVCLSRLKKGQDTRILPCLHEFHKV 180

Query: 181 CVERWFHECQNQKTCSICRFWVSDED-CQPTEVLTEEMVIWSTSLHVIDY 193
           CV+RWF+ C  +KTC +CRF +  ED C+  E LT+EMVIW +S HV  +
Sbjct: 181 CVDRWFNSC--RKTCPVCRFSMGGEDNCRVQEALTDEMVIWFSSFHVAGF 227

[Close]

BLAST of CmoCh03G006920 vs. ExPASy TrEMBL
Match: A0A7J7E325 (RING-type domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW01G00980 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-40
Identity = 92/205 (44.88%), Postives = 131/205 (63.90%), Query Frame = 0


Query: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
           MVR+S+SL++ AG+G++KTLSEILVCPLSKQPLRYCE +NSLISD+I VSFPI+ G+PCL
Sbjct: 1   MVRLSKSLMRNAGNGISKTLSEILVCPLSKQPLRYCEETNSLISDSIGVSFPIKDGIPCL 60

Query: 61  VPKEGRIIETDDGLK--GIKDALSCGDVIDSCFMKRAKEEGCETSAHPTLDDAAMER--- 120
           VP++G+I++TD+  K  G  D+ +      S         G       + D  +  +   
Sbjct: 61  VPRDGKILDTDELQKSDGGADSSALQMEFKSFIALIYHFVGLSAVEDKSKDGMSYSKNSG 120

Query: 121 ---EWCSVCLSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCSICRFWVSDEDCQP 180
              E C VCL    E +  ++LPC+H FHK+CV+RWF  C  ++TC +CRF +++E+ + 
Sbjct: 121 EGVELCCVCLWKFKEGEDMRVLPCRHRFHKVCVDRWFSAC--RRTCPVCRFSMAEEEEEE 180

Query: 181 T-----EVLTEEMVIWSTSLHVIDY 193
                 E  TEEMVIW +S H+  +
Sbjct: 181 NVQKSEEEFTEEMVIWFSSFHIAGF 203

[Close]

BLAST of CmoCh03G006920 vs. ExPASy TrEMBL
Match: A0A6J1BT35 (E3 ubiquitin-protein ligase RNF181 homolog OS=Momordica charantia OX=3673 GN=LOC111005465 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.4e-38
Identity = 81/119 (68.07%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 76  GIKDALSCGDVIDSCFMKRAKEEGCETSAHPTLDDAAMEREWCSVCLSNVMERKVAQI-- 135
           GIKDAL CGDVI+S   +RAK+EGCE  AHPTL D A+ REWCSVCLS VME + +++  
Sbjct: 21  GIKDALFCGDVIESHVKQRAKKEGCEALAHPTLYD-AVGREWCSVCLSKVMEGEESRVLR 80

Query: 136 LPCQHEFHKICVERWFHECQNQKTCSICRFWVSDEDCQPTEVLTEEMVIWSTSLHVIDY 193
           LPC HEFHKIC++RWFHEC  QKTC IC+FW+ D+D Q TEVLTEEMVIW TS HV+ Y
Sbjct: 81  LPCLHEFHKICIKRWFHEC--QKTCPICQFWLRDDDGQTTEVLTEEMVIWFTSFHVVGY 136

[Close]

BLAST of CmoCh03G006920 vs. ExPASy TrEMBL
Match: A0A6J1GDI4 (uncharacterized protein LOC111453193 OS=Cucurbita moschata OX=3662 GN=LOC111453193 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.0e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
          MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL
Sbjct: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60

Query: 61 VPKEGRIIETDDGLKG 77
          VPKEGRIIETDDGLKG
Sbjct: 61 VPKEGRIIETDDGLKG 76

[Close]

BLAST of CmoCh03G006920 vs. NCBI nr
Match: KAG6603894.1 (hypothetical protein SDJN03_04503, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 403.7 bits (1036), Expect = 9.1e-109
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
           MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL
Sbjct: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60

Query: 61  VPKEGRIIETDDGLKGIKDALSCGDVIDSCFMKRAKEEGCETSAHPTLDDAAMEREWCSV 120
           VPKEGRIIETDDGLKGIKDALSCGDVIDSCFMKRAKEEGCETSAHPTLDDAAMEREWCSV
Sbjct: 61  VPKEGRIIETDDGLKGIKDALSCGDVIDSCFMKRAKEEGCETSAHPTLDDAAMEREWCSV 120

Query: 121 CLSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCSICRFWVSDEDCQPTEVLTEEM 180
           CLSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCSICRFWVSDEDCQPTEVLTEEM
Sbjct: 121 CLSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCSICRFWVSDEDCQPTEVLTEEM 180

Query: 181 VIWSTSLHVIDY 193
           VIWSTSLHVIDY
Sbjct: 181 VIWSTSLHVIDY 192

[Close]

BLAST of CmoCh03G006920 vs. NCBI nr
Match: XP_022977421.1 (uncharacterized protein LOC111477769 isoform X1 [Cucurbita maxima])

HSP 1 Score: 313.2 bits (801), Expect = 1.6e-81
Identity = 156/192 (81.25%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
           MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFP+       
Sbjct: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPVS------ 60

Query: 61  VPKEGRIIETDDGLKGIKDALSCGDVIDSCFMKRAKEEGCETSAHPTLDDAAMEREWCSV 120
                            K     GDVIDS FMKRAKEEGCETSAHPTLDDAA+EREWCSV
Sbjct: 61  -----------------KMHYHVGDVIDSYFMKRAKEEGCETSAHPTLDDAAIEREWCSV 120

Query: 121 CLSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCSICRFWVSDEDCQPTEVLTEEM 180
           C SNVMERKVAQILPCQHEFHKICVERWFHECQNQKTC IC+FWV DEDCQPTEVLTEEM
Sbjct: 121 CFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQFWVRDEDCQPTEVLTEEM 169

Query: 181 VIWSTSLHVIDY 193
           VIWSTSLHVIDY
Sbjct: 181 VIWSTSLHVIDY 169

[Close]

BLAST of CmoCh03G006920 vs. NCBI nr
Match: XP_038883680.1 (E3 ubiquitin-protein ligase znrf3-like [Benincasa hispida])

HSP 1 Score: 194.5 bits (493), Expect = 8.3e-46
Identity = 88/115 (76.52%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 76  GIKDALSCGDVIDSCFMKRAKEEGCETSAHPTLDDAAMEREWCSVCLSNVMERKVAQILP 135
           GIK+AL C D I SCFM+RAKE+GCETS HPTLD AAME EWCSVCLS VMER+ A++LP
Sbjct: 59  GIKNALLCVDSIASCFMQRAKEKGCETSTHPTLDGAAMETEWCSVCLSKVMEREEARVLP 118

Query: 136 CQHEFHKICVERWFHECQNQKTCSICRFWVSDEDCQPTEVLTEEMVIWSTSLHVI 191
           CQHE HKICVERWFH+CQ QKTC ICRFW+ DED Q TEVLTEEMVIW T   VI
Sbjct: 119 CQHEVHKICVERWFHDCQKQKTCPICRFWMRDEDVQTTEVLTEEMVIWFTCFQVI 173

[Close]

BLAST of CmoCh03G006920 vs. NCBI nr
Match: KAB1199952.1 (Protein preY, mitochondrial [Morella rubra] >KAB1199967.1 Protein preY, mitochondrial [Morella rubra])

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-42
Identity = 105/230 (45.65%), Postives = 132/230 (57.39%), Query Frame = 0


Query: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
           MVR S +LLK+AG+GL KTLSEILVCPLSKQPLRYC  +NSLISD + VSFPI+ G+PCL
Sbjct: 1   MVRASIALLKDAGNGLCKTLSEILVCPLSKQPLRYCVETNSLISDAVGVSFPIKDGIPCL 60

Query: 61  VPKEGRIIETDDGLK---GIKDALSCGDVIDSCFMKRAKEEGCETSAHPTLDDAAME--- 120
           VPK+G+IIE DD L       D+ S G V+ S F            A P L +A      
Sbjct: 61  VPKDGKIIEADDMLNTDDEESDSGSSGAVV-SQFQAEPSFRLIGLRAQPALKEAPSSSYS 120

Query: 121 -------------------------------REWCSVCLSNVMERKVAQILPCQHEFHKI 180
                                           + C VCLS + + +  +ILPC HEFHK+
Sbjct: 121 VINWDDLDEVKEDPTMSARGSSSSSGEVHEGEQQCCVCLSRLKKGQDTRILPCLHEFHKV 180

Query: 181 CVERWFHECQNQKTCSICRFWVSDED-CQPTEVLTEEMVIWSTSLHVIDY 193
           CV+RWF+ C  +KTC +CRF +  ED C+  E LT+EMVIW +S HV  +
Sbjct: 181 CVDRWFNSC--RKTCPVCRFSMGGEDNCRVQEALTDEMVIWFSSFHVAGF 227

[Close]

BLAST of CmoCh03G006920 vs. NCBI nr
Match: KAF5753062.1 (putative Protein preY mitochondrial precursor [Tripterygium wilfordii])

HSP 1 Score: 176.0 bits (445), Expect = 3.1e-40
Identity = 92/205 (44.88%), Postives = 131/205 (63.90%), Query Frame = 0


Query: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
           MVR+S+SL++ AG+G++KTLSEILVCPLSKQPLRYCE +NSLISD+I VSFPI+ G+PCL
Sbjct: 1   MVRLSKSLMRNAGNGISKTLSEILVCPLSKQPLRYCEETNSLISDSIGVSFPIKDGIPCL 60

Query: 61  VPKEGRIIETDDGLK--GIKDALSCGDVIDSCFMKRAKEEGCETSAHPTLDDAAMER--- 120
           VP++G+I++TD+  K  G  D+ +      S         G       + D  +  +   
Sbjct: 61  VPRDGKILDTDELQKSDGGADSSALQMEFKSFIALIYHFVGLSAVEDKSKDGMSYSKNSG 120

Query: 121 ---EWCSVCLSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCSICRFWVSDEDCQP 180
              E C VCL    E +  ++LPC+H FHK+CV+RWF  C  ++TC +CRF +++E+ + 
Sbjct: 121 EGVELCCVCLWKFKEGEDMRVLPCRHRFHKVCVDRWFSAC--RRTCPVCRFSMAEEEEEE 180

Query: 181 T-----EVLTEEMVIWSTSLHVIDY 193
                 E  TEEMVIW +S H+  +
Sbjct: 181 NVQKSEEEFTEEMVIWFSSFHIAGF 203

[Close]

BLAST of CmoCh03G006920 vs. TAIR 10
Match: AT4G35905.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-23
Identity = 48/71 (67.61%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
          MVR+++ LLK+AG+ + KTLSEILVCPLSKQPLR+CE + SL+SDTI VSFPI+ G+PCL
Sbjct: 1  MVRLNRVLLKDAGNVIDKTLSEILVCPLSKQPLRFCEKTKSLVSDTIGVSFPIKDGIPCL 60

Query: 61 VPKEGRIIETD 72
          VPK+G+I+E +
Sbjct: 61 VPKDGKILEEE 71

[Close]

BLAST of CmoCh03G006920 vs. TAIR 10
Match: AT3G51325.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-11
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 114 EREWCSVCLSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCSICRFWVSDEDCQPT 173
           E E CSVCL  +  + V + LPC HEFH +CV+ WF+    +  C +CRF        PT
Sbjct: 22  EEECCSVCLMRMEAKDVIKSLPCSHEFHSLCVDTWFN-VSRKICCPLCRF-------SPT 81

Query: 174 EV-LTEEMVIWSTSLH 189
            + LT+E+++W +S H
Sbjct: 82  TILLTDELLLWFSSFH 89

[Close]

BLAST of CmoCh03G006920 vs. TAIR 10
Match: AT3G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.1e-07
Identity = 26/75 (34.67%), Postives = 39/75 (52.00%), Query Frame = 0


Query: 95  AKEEGCETSAHPTLDDAAMERE------WCSVCLSNVMERKVAQILPCQHEFHKICVERW 154
           AK+    +SA   LD A   ++       CSVCL  V   ++ + LPC H+FH  C++ W
Sbjct: 182 AKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPW 241

Query: 155 FHECQNQKTCSICRF 164
             +   Q TC +C+F
Sbjct: 242 LRQ---QGTCPVCKF 253

[Close]

BLAST of CmoCh03G006920 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A )

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06
Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 0


Query: 118 CSVCLSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCSICRFWVSDEDC 171
           C VCLS + E +  + L C+H FHK C+E W H  Q   TC +CR  +  +DC
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLH--QFNFTCPLCRSALVSDDC 136

[Close]

BLAST of CmoCh03G006920 vs. TAIR 10
Match: AT5G45290.2 (RING/U-box superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 5.3e-06
Identity = 19/45 (42.22%), Postives = 26/45 (57.78%), Query Frame = 0


Query: 118 CSVCLSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCSICR 163
           C +CL    E    + LPC HEFHK CV++W  E  + + C +CR
Sbjct: 490 CYICLVEYEEADSIRTLPCHHEFHKTCVDKWLKEI-HSRVCPLCR 533

The following BLAST results are available for this feature:

BLAST of CmoCh03G006920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0BWC7	6.5e-09	41.43	UPF0434 protein HNE_3545 OS=Hyphomonas neptunium (strain ATCC 15444) OX=228405 G...	[more]
Q5M8Z2	5.5e-08	45.28	Protein preY, mitochondrial OS=Xenopus tropicalis OX=8364 GN=pyurf PE=2 SV=1	[more]
A4YK44	3.6e-07	40.98	UPF0434 protein BRADO0313 OS=Bradyrhizobium sp. (strain ORS 278) OX=114615 GN=BR...	[more]
Q5FFA6	7.9e-07	46.30	UPF0434 protein ERGA_CDS_01260 OS=Ehrlichia ruminantium (strain Gardel) OX=30240...	[more]
Q5HC42	7.9e-07	46.30	UPF0434 protein Erum1340/ERWE_CDS_01300 OS=Ehrlichia ruminantium (strain Welgevo...	[more]

BLAST of CmoCh03G006920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IJV3	7.8e-82	81.25	uncharacterized protein LOC111477769 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6A1UIA7	9.3e-43	45.65	Protein preY, mitochondrial OS=Morella rubra OX=262757 GN=CJ030_MR0G008870 PE=4 ...	[more]
A0A7J7E325	1.5e-40	44.88	RING-type domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088...	[more]
A0A6J1BT35	1.4e-38	68.07	E3 ubiquitin-protein ligase RNF181 homolog OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1GDI4	1.0e-33	100.00	uncharacterized protein LOC111453193 OS=Cucurbita moschata OX=3662 GN=LOC1114531...	[more]

BLAST of CmoCh03G006920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603894.1	9.1e-109	100.00	hypothetical protein SDJN03_04503, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022977421.1	1.6e-81	81.25	uncharacterized protein LOC111477769 isoform X1 [Cucurbita maxima]	[more]
XP_038883680.1	8.3e-46	76.52	E3 ubiquitin-protein ligase znrf3-like [Benincasa hispida]	[more]
KAB1199952.1	1.9e-42	45.65	Protein preY, mitochondrial [Morella rubra] >KAB1199967.1 Protein preY, mitochon...	[more]
KAF5753062.1	3.1e-40	44.88	putative Protein preY mitochondrial precursor [Tripterygium wilfordii]	[more]

BLAST of CmoCh03G006920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35905.1	1.6e-23	67.61	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 ...	[more]
AT3G51325.1	3.2e-11	40.79	RING/U-box superfamily protein	[more]
AT3G55530.1	2.1e-07	34.67	RING/U-box superfamily protein	[more]
AT1G15100.1	1.1e-06	43.40	RING-H2 finger A2A	[more]
AT5G45290.2	5.3e-06	42.22	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 118..161 e-value: 9.5E-5 score: 31.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 118..162 e-value: 2.2E-7 score: 31.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 118..162 score: 11.928664
None	No IPR available	GENE3D	2.20.25.10		coord: 23..74 e-value: 2.4E-14 score: 54.7
None	No IPR available	PANTHER	PTHR33505	ZGC:162634	coord: 1..76
None	No IPR available	PANTHER	PTHR33505:SF4	ZGC:162634	coord: 1..76
None	No IPR available	SUPERFAMILY	158997	Trm112p-like	coord: 17..70
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 112..167
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 95..167 e-value: 2.7E-11 score: 44.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G006920.1	CmoCh03G006920.1	mRNA