CmoCh03G006700 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G006700
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionDUF1990 domain-containing protein
LocationCmo_Chr03: 5971467 .. 5972301 (-)
RNA-Seq ExpressionCmoCh03G006700
SyntenyCmoCh03G006700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTCATCATTAGGTCTGGTTCCTTCAACTATAGCAGCAAGTTTAGAGGAGCTACTGCTAATCCCAGCTCTTGCCTGCAAGAAGATAAGGGGCTCTCACAAGAAGGGTTTCTTCTCAACCATGCTCGTATTTTGGTGGGTTCTGGTGTTGAGACTTATGAAAAGGGGAAGAAAGCTCTTCAGAACTGGAGGTTTTCTGGCTATATACCTTTTGGTTGAACAGTAACGTATTAGACGAGAATTCTTGGTCTCTTCAACCCAGTGCAAATTTTGCAGGCATTTTGGGTTGAATTGGGCATTTGTTGATTCCTCAACGCCAGTTCATCCGGGAGTGAAGTTTTGTGTCTGTGCCAAGGAGTTCCTTCCATGGGTGGTGATGCCTCTTCAAATTGTATATGTAAATGAGAACAGAGGTACCAATATGGCTAGGACATGTTTCAGTTTTGGCAGTGGTACCCTTCAAGGCCATCTTCTGGTTCGTCCATCATTAATTTGTTTTTTCCAGGCTAATTTTCGTTTGTTCTTCTCTAATTTATATTATTGGGTTTCACTATACTTGTATTAATGTACTTGATAGTTAATATGATCTTGAATTCTCACCATTCCAGGCGGGTGAAGAACGGTTTTCGATCGAGATGGACTCGAACAGCCAGGTGTGGTATGAAATTCTTTCCTTCTCAAAGCCTGCCCACATATTATCATTTCTTAGTTATCCTTATGTAATTCTTCGGCAAAAGTATTTTGCTTATCAATCTACAAATGCAGTTAAGAAATATTTGACTGCCAAGCATTCCTAACTCCTGGTGTGCTTGTGTGTATGTTCTTAGCTATC

mRNA sequence

ATGATGTTCATCATTAGGTCTGGTTCCTTCAACTATAGCAGCAAGTTTAGAGGAGCTACTGCTAATCCCAGCTCTTGCCTGCAAGAAGATAAGGGGCTCTCACAAGAAGGGTTTCTTCTCAACCATGCTCGTATTTTGGTGGGTTCTGGTGTTGAGACTTATGAAAAGGGGAAGAAAGCTCTTCAGAACTGGAGACGAGAATTCTTGGTCTCTTCAACCCAGTGCAAATTTTGCAGGCATTTTGGGTTGAATTGGGCATTTGTTGATTCCTCAACGCCAGTTCATCCGGGAGTGAAGTTTTGTGTCTGTGCCAAGGAGTTCCTTCCATGGGTGGTGATGCCTCTTCAAATTGTATATGTAAATGAGAACAGAGGTACCAATATGGCTAGGACATGTTTCAGTTTTGGCAGTGGTACCCTTCAAGGCCATCTTCTGGCGGGTGAAGAACGGTTTTCGATCGAGATGGACTCGAACAGCCAGGTGTGGTATGAAATTCTTTCCTTCTCAAAGCCTGCCCACATATTATCATTTCTTAGTTATCCTTATGTAATTCTTCGGCAAAAGTATTTTGCTTATCAATCTACAAATGCAGTTAAGAAATATTTGACTGCCAAGCATTCCTAACTCCTGGTGTGCTTGTGTGTATGTTCTTAGCTATC

Coding sequence (CDS)

ATGATGTTCATCATTAGGTCTGGTTCCTTCAACTATAGCAGCAAGTTTAGAGGAGCTACTGCTAATCCCAGCTCTTGCCTGCAAGAAGATAAGGGGCTCTCACAAGAAGGGTTTCTTCTCAACCATGCTCGTATTTTGGTGGGTTCTGGTGTTGAGACTTATGAAAAGGGGAAGAAAGCTCTTCAGAACTGGAGACGAGAATTCTTGGTCTCTTCAACCCAGTGCAAATTTTGCAGGCATTTTGGGTTGAATTGGGCATTTGTTGATTCCTCAACGCCAGTTCATCCGGGAGTGAAGTTTTGTGTCTGTGCCAAGGAGTTCCTTCCATGGGTGGTGATGCCTCTTCAAATTGTATATGTAAATGAGAACAGAGGTACCAATATGGCTAGGACATGTTTCAGTTTTGGCAGTGGTACCCTTCAAGGCCATCTTCTGGCGGGTGAAGAACGGTTTTCGATCGAGATGGACTCGAACAGCCAGGTGTGGTATGAAATTCTTTCCTTCTCAAAGCCTGCCCACATATTATCATTTCTTAGTTATCCTTATGTAATTCTTCGGCAAAAGTATTTTGCTTATCAATCTACAAATGCAGTTAAGAAATATTTGACTGCCAAGCATTCCTAA

Protein sequence

MMFIIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQNWRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNAVKKYLTAKHS
Homology
BLAST of CmoCh03G006700 vs. ExPASy Swiss-Prot
Match: Q8GXB1 (UPF0548 protein At2g17695 OS=Arabidopsis thaliana OX=3702 GN=At2g17695 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-65
Identity = 117/201 (58.21%), Postives = 151/201 (75.12%), Query Frame = 0

Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I ++G+FNY +K+RG ++   + L+ED  + ++GFL+NHAR+LVGSG E+YEKGKKALQN
Sbjct: 18  INKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVLVGSGRESYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              +HFG++WAFVD +TPV  G KFC+C KE LPWV++PLQ+VYV+E+
Sbjct: 78  W--------------KHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDES 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R +      F +GSGTLQGHLLAGEE+FSIE+D N +VWYEI SFSKPAH LSFL YPYV
Sbjct: 138 RKSRKGPAHFGYGSGTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
            LRQK+FA  S+ AV K++ A
Sbjct: 198 KLRQKHFARHSSEAVLKHVNA 204

BLAST of CmoCh03G006700 vs. ExPASy Swiss-Prot
Match: Q86JL6 (UPF0548 protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0271742 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-13
Identity = 57/203 (28.08%), Postives = 94/203 (46.31%), Query Frame = 0

Query: 6   RSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQNWR 65
           R   F YS+ +   T + ++  + +       F ++  +I +G+GVE ++K   AL+ W 
Sbjct: 20  REEQFAYSNLY--GTQDYATKEEYEMDPKYSNFDVDQVKIQLGTGVECFQKAVAALKQW- 79

Query: 66  REFLVSSTQCKFCRHFGLNWA-FVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENR 125
                        +HF L+W  F   +TP+  G    + +K+   W++   +I Y+ +  
Sbjct: 80  -------------KHFDLDWVDFYFKNTPIAVGETVGILSKQVGFWILSFARINYLYDGD 139

Query: 126 GTNMARTCFSFGSGTLQGHLLAGEERFSIE-------MDSNSQVWYEILSFSKPAHILSF 185
             +     F +  GTL+ H+  GEERF IE             V+YE+LSFS+P++ LS 
Sbjct: 140 QED-GSIKFGYSYGTLKDHVEKGEERFVIEWVRDPDGAPDKGAVYYEMLSFSEPSYWLSQ 199

Query: 186 LSYPYVILRQKYFAYQSTNAVKK 201
           L YP     Q  F   S N + K
Sbjct: 200 LGYPVTRYFQNKFVVDSCNQMLK 205

BLAST of CmoCh03G006700 vs. ExPASy Swiss-Prot
Match: Q9RST8 (UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=DR_2035 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-08
Identity = 44/148 (29.73%), Postives = 68/148 (45.95%), Query Frame = 0

Query: 44  RILVGSGVETYEKGKKALQNWRREFLVSSTQCKFCRHFGLNWAFVDSSTPV-HPGVKFCV 103
           R+ VG G   +E+ K AL+  +        Q    R  G      ++STP+   G    +
Sbjct: 47  RVRVGEGEACWERAKAALRGGQ------MFQDWVLRPHG------EASTPLSRQGATVVL 106

Query: 104 CAKEFLPWVVMPLQIVYVNENRGTNMA--RTCFSFGSGTLQGHLLAGEERFSIEMDSNSQ 163
             + F PW      +  +  NR   +      + FG GTL GHL+ GEERF +E D+   
Sbjct: 107 LVRHFGPWGRRKWGLYSLMTNRVLYLVDEPDRYGFGYGTLPGHLVRGEERFLLERDAGGA 166

Query: 164 VWYEILSFSKPAHILSFLSYPYVILRQK 189
           VW+++ +FS+ A   S  + P V   Q+
Sbjct: 167 VWFDLTTFSRAALPFSRFAQPLVGAAQR 182

BLAST of CmoCh03G006700 vs. ExPASy TrEMBL
Match: A0A6J1GGC4 (UPF0548 protein At2g17695 OS=Cucurbita moschata OX=3662 GN=LOC111453688 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.9e-102
Identity = 189/204 (92.65%), Postives = 189/204 (92.65%), Query Frame = 0

Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IDRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN
Sbjct: 78  W--------------RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV
Sbjct: 138 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTAKHS 208
           ILRQKYFAYQSTNAVKKYLTAKHS
Sbjct: 198 ILRQKYFAYQSTNAVKKYLTAKHS 207

BLAST of CmoCh03G006700 vs. ExPASy TrEMBL
Match: A0A6J1IMP9 (UPF0548 protein At2g17695 OS=Cucurbita maxima OX=3661 GN=LOC111478798 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.5e-102
Identity = 188/204 (92.16%), Postives = 189/204 (92.65%), Query Frame = 0

Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IDRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN
Sbjct: 78  W--------------RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY+
Sbjct: 138 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYI 197

Query: 184 ILRQKYFAYQSTNAVKKYLTAKHS 208
           ILRQKYFAYQSTNAVKKYLTAKHS
Sbjct: 198 ILRQKYFAYQSTNAVKKYLTAKHS 207

BLAST of CmoCh03G006700 vs. ExPASy TrEMBL
Match: A0A1S3B2T0 (UPF0548 protein At2g17695 OS=Cucumis melo OX=3656 GN=LOC103485173 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.6e-96
Identity = 178/204 (87.25%), Postives = 182/204 (89.22%), Query Frame = 0

Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I R+GSFNYSSKFRGATANPSSCLQEDKG+SQEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IERAGSFNYSSKFRGATANPSSCLQEDKGISQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVYVNEN
Sbjct: 78  W--------------RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R TN  RTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILS SKPAHILSFLSYPYV
Sbjct: 138 RNTNKGRTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSISKPAHILSFLSYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTAKHS 208
           ILRQKYFA+QSTNA KKYLT  HS
Sbjct: 198 ILRQKYFAHQSTNAFKKYLTPTHS 207

BLAST of CmoCh03G006700 vs. ExPASy TrEMBL
Match: A0A0A0KKV8 (DUF1990 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G507400 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 5.1e-95
Identity = 177/205 (86.34%), Postives = 183/205 (89.27%), Query Frame = 0

Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDK-GLSQEGFLLNHARILVGSGVETYEKGKKALQ 63
           I R+GSFNY+SKFRGATANPSSCLQEDK G+SQEGFLLNHARILVGSGV TYEKGKKALQ
Sbjct: 18  IERAGSFNYNSKFRGATANPSSCLQEDKGGISQEGFLLNHARILVGSGVGTYEKGKKALQ 77

Query: 64  NWRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNE 123
           NW              RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVYVNE
Sbjct: 78  NW--------------RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNE 137

Query: 124 NRGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY 183
           NR TN  RTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY
Sbjct: 138 NRDTNKGRTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY 197

Query: 184 VILRQKYFAYQSTNAVKKYLTAKHS 208
           +ILRQKYFA+QSTNAVKKYLT  HS
Sbjct: 198 IILRQKYFAHQSTNAVKKYLTPTHS 208

BLAST of CmoCh03G006700 vs. ExPASy TrEMBL
Match: A0A6J1CKD3 (UPF0548 protein At2g17695 OS=Momordica charantia OX=3673 GN=LOC111012092 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.8e-92
Identity = 172/201 (85.57%), Postives = 179/201 (89.05%), Query Frame = 0

Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNYSSKFRGATANPSS L+EDKGL QEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IDRSGSFNYSSKFRGATANPSSSLKEDKGLQQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              RHFGLNWAFVDSSTPV+PGVKFCVC+KEFLPWVVMPLQIVYVNEN
Sbjct: 78  W--------------RHFGLNWAFVDSSTPVNPGVKFCVCSKEFLPWVVMPLQIVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R   MARTCFSFGSGTLQGHLLAGEERFSIEMD N+QVWYEILSFSKPAHILSF+SYPYV
Sbjct: 138 RDAKMARTCFSFGSGTLQGHLLAGEERFSIEMDKNNQVWYEILSFSKPAHILSFISYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
           ILRQKYFA+QS+NAVKKY TA
Sbjct: 198 ILRQKYFAHQSSNAVKKYSTA 204

BLAST of CmoCh03G006700 vs. NCBI nr
Match: KAG7034054.1 (UPF0548 protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104
Identity = 193/207 (93.24%), Postives = 193/207 (93.24%), Query Frame = 0

Query: 1   MMFIIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKA 60
           MMFIIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKA
Sbjct: 1   MMFIIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKA 60

Query: 61  LQNWRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYV 120
           LQNW              RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYV
Sbjct: 61  LQNW--------------RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYV 120

Query: 121 NENRGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSY 180
           NENRGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSY
Sbjct: 121 NENRGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSY 180

Query: 181 PYVILRQKYFAYQSTNAVKKYLTAKHS 208
           PYVILRQKYFAYQSTNAVKKYLTAKHS
Sbjct: 181 PYVILRQKYFAYQSTNAVKKYLTAKHS 193

BLAST of CmoCh03G006700 vs. NCBI nr
Match: XP_022950650.1 (UPF0548 protein At2g17695 [Cucurbita moschata] >XP_023543885.1 UPF0548 protein At2g17695 [Cucurbita pepo subsp. pepo] >XP_023543886.1 UPF0548 protein At2g17695 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 381.7 bits (979), Expect = 4.0e-102
Identity = 189/204 (92.65%), Postives = 189/204 (92.65%), Query Frame = 0

Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IDRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN
Sbjct: 78  W--------------RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV
Sbjct: 138 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTAKHS 208
           ILRQKYFAYQSTNAVKKYLTAKHS
Sbjct: 198 ILRQKYFAYQSTNAVKKYLTAKHS 207

BLAST of CmoCh03G006700 vs. NCBI nr
Match: XP_022979037.1 (UPF0548 protein At2g17695 [Cucurbita maxima])

HSP 1 Score: 381.3 bits (978), Expect = 5.2e-102
Identity = 188/204 (92.16%), Postives = 189/204 (92.65%), Query Frame = 0

Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IDRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN
Sbjct: 78  W--------------RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY+
Sbjct: 138 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYI 197

Query: 184 ILRQKYFAYQSTNAVKKYLTAKHS 208
           ILRQKYFAYQSTNAVKKYLTAKHS
Sbjct: 198 ILRQKYFAYQSTNAVKKYLTAKHS 207

BLAST of CmoCh03G006700 vs. NCBI nr
Match: XP_008440884.1 (PREDICTED: UPF0548 protein At2g17695 [Cucumis melo] >XP_008440885.1 PREDICTED: UPF0548 protein At2g17695 [Cucumis melo])

HSP 1 Score: 362.1 bits (928), Expect = 3.3e-96
Identity = 178/204 (87.25%), Postives = 182/204 (89.22%), Query Frame = 0

Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I R+GSFNYSSKFRGATANPSSCLQEDKG+SQEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IERAGSFNYSSKFRGATANPSSCLQEDKGISQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVYVNEN
Sbjct: 78  W--------------RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R TN  RTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILS SKPAHILSFLSYPYV
Sbjct: 138 RNTNKGRTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSISKPAHILSFLSYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTAKHS 208
           ILRQKYFA+QSTNA KKYLT  HS
Sbjct: 198 ILRQKYFAHQSTNAFKKYLTPTHS 207

BLAST of CmoCh03G006700 vs. NCBI nr
Match: XP_031742966.1 (UPF0548 protein At2g17695 isoform X2 [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 1.2e-95
Identity = 179/208 (86.06%), Postives = 185/208 (88.94%), Query Frame = 0

Query: 1   MMFIIRSGSFNYSSKFRGATANPSSCLQEDK-GLSQEGFLLNHARILVGSGVETYEKGKK 60
           MM I R+GSFNY+SKFRGATANPSSCLQEDK G+SQEGFLLNHARILVGSGV TYEKGKK
Sbjct: 1   MMVINRAGSFNYNSKFRGATANPSSCLQEDKGGISQEGFLLNHARILVGSGVGTYEKGKK 60

Query: 61  ALQNWRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVY 120
           ALQNW              RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVY
Sbjct: 61  ALQNW--------------RHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVY 120

Query: 121 VNENRGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLS 180
           VNENR TN  RTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLS
Sbjct: 121 VNENRDTNKGRTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLS 180

Query: 181 YPYVILRQKYFAYQSTNAVKKYLTAKHS 208
           YPY+ILRQKYFA+QSTNAVKKYLT  HS
Sbjct: 181 YPYIILRQKYFAHQSTNAVKKYLTPTHS 194

BLAST of CmoCh03G006700 vs. TAIR 10
Match: AT2G17695.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960); Has 259 Blast hits to 259 proteins in 120 species: Archae - 0; Bacteria - 197; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 251.1 bits (640), Expect = 7.5e-67
Identity = 117/201 (58.21%), Postives = 151/201 (75.12%), Query Frame = 0

Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I ++G+FNY +K+RG ++   + L+ED  + ++GFL+NHAR+LVGSG E+YEKGKKALQN
Sbjct: 18  INKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVLVGSGRESYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              +HFG++WAFVD +TPV  G KFC+C KE LPWV++PLQ+VYV+E+
Sbjct: 78  W--------------KHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDES 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R +      F +GSGTLQGHLLAGEE+FSIE+D N +VWYEI SFSKPAH LSFL YPYV
Sbjct: 138 RKSRKGPAHFGYGSGTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
            LRQK+FA  S+ AV K++ A
Sbjct: 198 KLRQKHFARHSSEAVLKHVNA 204

BLAST of CmoCh03G006700 vs. TAIR 10
Match: AT2G17695.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 251.1 bits (640), Expect = 7.5e-67
Identity = 117/201 (58.21%), Postives = 151/201 (75.12%), Query Frame = 0

Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I ++G+FNY +K+RG ++   + L+ED  + ++GFL+NHAR+LVGSG E+YEKGKKALQN
Sbjct: 18  INKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVLVGSGRESYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              +HFG++WAFVD +TPV  G KFC+C KE LPWV++PLQ+VYV+E+
Sbjct: 78  W--------------KHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDES 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R +      F +GSGTLQGHLLAGEE+FSIE+D N +VWYEI SFSKPAH LSFL YPYV
Sbjct: 138 RKSRKGPAHFGYGSGTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
            LRQK+FA  S+ AV K++ A
Sbjct: 198 KLRQKHFARHSSEAVLKHVNA 204

BLAST of CmoCh03G006700 vs. TAIR 10
Match: AT2G17695.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960). )

HSP 1 Score: 251.1 bits (640), Expect = 7.5e-67
Identity = 117/201 (58.21%), Postives = 151/201 (75.12%), Query Frame = 0

Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I ++G+FNY +K+RG ++   + L+ED  + ++GFL+NHAR+LVGSG E+YEKGKKALQN
Sbjct: 18  INKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVLVGSGRESYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              +HFG++WAFVD +TPV  G KFC+C KE LPWV++PLQ+VYV+E+
Sbjct: 78  W--------------KHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDES 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R +      F +GSGTLQGHLLAGEE+FSIE+D N +VWYEI SFSKPAH LSFL YPYV
Sbjct: 138 RKSRKGPAHFGYGSGTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
            LRQK+FA  S+ AV K++ A
Sbjct: 198 KLRQKHFARHSSEAVLKHVNA 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8GXB11.1e-6558.21UPF0548 protein At2g17695 OS=Arabidopsis thaliana OX=3702 GN=At2g17695 PE=2 SV=1[more]
Q86JL62.7e-1328.08UPF0548 protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0271742 PE=3 SV=1[more]
Q9RST85.9e-0829.73UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 2053... [more]
Match NameE-valueIdentityDescription
A0A6J1GGC41.9e-10292.65UPF0548 protein At2g17695 OS=Cucurbita moschata OX=3662 GN=LOC111453688 PE=4 SV=... [more]
A0A6J1IMP92.5e-10292.16UPF0548 protein At2g17695 OS=Cucurbita maxima OX=3661 GN=LOC111478798 PE=4 SV=1[more]
A0A1S3B2T01.6e-9687.25UPF0548 protein At2g17695 OS=Cucumis melo OX=3656 GN=LOC103485173 PE=4 SV=1[more]
A0A0A0KKV85.1e-9586.34DUF1990 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G507400 PE=... [more]
A0A6J1CKD31.8e-9285.57UPF0548 protein At2g17695 OS=Momordica charantia OX=3673 GN=LOC111012092 PE=4 SV... [more]
Match NameE-valueIdentityDescription
KAG7034054.11.1e-10493.24UPF0548 protein, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022950650.14.0e-10292.65UPF0548 protein At2g17695 [Cucurbita moschata] >XP_023543885.1 UPF0548 protein A... [more]
XP_022979037.15.2e-10292.16UPF0548 protein At2g17695 [Cucurbita maxima][more]
XP_008440884.13.3e-9687.25PREDICTED: UPF0548 protein At2g17695 [Cucumis melo] >XP_008440885.1 PREDICTED: U... [more]
XP_031742966.11.2e-9586.06UPF0548 protein At2g17695 isoform X2 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT2G17695.17.5e-6758.21FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT2G17695.27.5e-6758.21FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT2G17695.37.5e-6758.21FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018960Domain of unknown function DUF1990PFAMPF09348DUF1990coord: 32..196
e-value: 1.4E-34
score: 119.4
NoneNo IPR availablePANTHERPTHR34202UPF0548 PROTEINcoord: 4..205
NoneNo IPR availablePANTHERPTHR34202:SF1UPF0548 PROTEINcoord: 4..205

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G006700.1CmoCh03G006700.1mRNA