CmoCh03G006460 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G006460
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr03: 5879401 .. 5879824 (-)
RNA-Seq Expression	CmoCh03G006460
Synteny	CmoCh03G006460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCGATCCAGAATGTGAGGGCGCATATAGCAATGCAAAGGCCTCGAACTCGAGTTGGAAAGATCTCGGAGCAGAGGATGTTGGGGACTGGACCAAAGCCCATGACAAAGCAACAGAAGTAAGCTACAACACTGATGGTTGAGATTGTTGCATTGGCAACAGACCCCATGTTCACCAAGCTACCAATGACAAGCACGATCAGTGATATTATAAGTACCGGAATGGTAGATAGCAGAAGAGACCTGCAAGAAAAATAAAGCTTCATGGTCATAATTGAGTCACAGGAGCAACTCAAAGACCATTTGAACAACAGTGGATTGTTATTTTTGTTTACCTTCTACCAGCTACGTCCATCAGCCTCATGGCAATGCCTATGGAAGGAAGCATCAGAAATGTAGTCAGAGCACTAATGAGCAGTGA

mRNA sequence

ATGTCTCCGATCCAGAATGTGAGGGCGCATATAGCAATGCAAAGGCCTCGAACTCGAGTTGGAAAGATCTCGGAGCAGAGGATGTTGGGGACTGGACCAAAGCCCATGACAAAGCAACAGAACTACGTCCATCAGCCTCATGGCAATGCCTATGGAAGGAAGCATCAGAAATGTAGTCAGAGCACTAATGAGCAGTGA

Coding sequence (CDS)

ATGTCTCCGATCCAGAATGTGAGGGCGCATATAGCAATGCAAAGGCCTCGAACTCGAGTTGGAAAGATCTCGGAGCAGAGGATGTTGGGGACTGGACCAAAGCCCATGACAAAGCAACAGAACTACGTCCATCAGCCTCATGGCAATGCCTATGGAAGGAAGCATCAGAAATGTAGTCAGAGCACTAATGAGCAGTGA

Protein sequence

MSPIQNVRAHIAMQRPRTRVGKISEQRMLGTGPKPMTKQQNYVHQPHGNAYGRKHQKCSQSTNEQ

Homology

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BLAST of CmoCh03G006460 vs. ExPASy TrEMBL
Match: J3LIR7 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 29/42 (69.05%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 1  MSPIQNVRAHIAMQRPRTRVGKISEQRMLGTGPKPMTKQQNY 43
          MS  Q     +AMQRPRTRVGKIS  RMLG GP PMTKQQ Y
Sbjct: 1  MSASQKASEQMAMQRPRTRVGKISAHRMLGMGPNPMTKQQRY 42

The following BLAST results are available for this feature:

BLAST of CmoCh03G006460 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G006460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
J3LIR7	1.5e-05	69.05	Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1	[more]

BLAST of CmoCh03G006460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmoCh03G006460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G006460.1	CmoCh03G006460.1	mRNA