CmoCh03G006350 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G006350
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionDYW_deaminase domain-containing protein
LocationCmo_Chr03: 5828867 .. 5829337 (-)
RNA-Seq ExpressionCmoCh03G006350
SyntenyCmoCh03G006350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCGCCAAAGCACCAAGCGACCAAGAGAATCATCAGAGGAACAATCTTCGCTGCCGGAGATCGGTAATGGAAAGAAGCAGCGCCTCCACGGCGGCAGTGACGACGCCAAGGAACCTCTTCCTAGAACATTCTTTGATTTCGATCTGTCGTTCGGCGTCTTCGATTTCCCCTGGTTGAAGGAGAGCCTGATTTATTGCGAATCCGAGGACTGGAAATTGGACGATGTTTTCTTCACCTCCTTTTACAATGGACTATCCACCGCCGATGCTACTACGATTGGGACGGAGTTGTCGTCGGGGCAATTGGTTTGGAGTAATCTGCCGGATCCTTGGGAGGCGGAATACGAGGCACAAGTGCCGCCGACGACGCTGGACGACGGCGGAGGAGGACAGGCAGGGGAGGAGATGGATTGTATCTGGAGCTCTCTGCTAAATCAACCGCTTCAACAAGGGAGTAGAGCGTTGTAG

mRNA sequence

ATGGACCGCCAAAGCACCAAGCGACCAAGAGAATCATCAGAGGAACAATCTTCGCTGCCGGAGATCGGTAATGGAAAGAAGCAGCGCCTCCACGGCGGCAGTGACGACGCCAAGGAACCTCTTCCTAGAACATTCTTTGATTTCGATCTGTCGTTCGGCGTCTTCGATTTCCCCTGGTTGAAGGAGAGCCTGATTTATTGCGAATCCGAGGACTGGAAATTGGACGATGTTTTCTTCACCTCCTTTTACAATGGACTATCCACCGCCGATGCTACTACGATTGGGACGGAGTTGTCGTCGGGGCAATTGGTTTGGAGTAATCTGCCGGATCCTTGGGAGGCGGAATACGAGGCACAAGTGCCGCCGACGACGCTGGACGACGGCGGAGGAGGACAGGCAGGGGAGGAGATGGATTGTATCTGGAGCTCTCTGCTAAATCAACCGCTTCAACAAGGGAGTAGAGCGTTGTAG

Coding sequence (CDS)

ATGGACCGCCAAAGCACCAAGCGACCAAGAGAATCATCAGAGGAACAATCTTCGCTGCCGGAGATCGGTAATGGAAAGAAGCAGCGCCTCCACGGCGGCAGTGACGACGCCAAGGAACCTCTTCCTAGAACATTCTTTGATTTCGATCTGTCGTTCGGCGTCTTCGATTTCCCCTGGTTGAAGGAGAGCCTGATTTATTGCGAATCCGAGGACTGGAAATTGGACGATGTTTTCTTCACCTCCTTTTACAATGGACTATCCACCGCCGATGCTACTACGATTGGGACGGAGTTGTCGTCGGGGCAATTGGTTTGGAGTAATCTGCCGGATCCTTGGGAGGCGGAATACGAGGCACAAGTGCCGCCGACGACGCTGGACGACGGCGGAGGAGGACAGGCAGGGGAGGAGATGGATTGTATCTGGAGCTCTCTGCTAAATCAACCGCTTCAACAAGGGAGTAGAGCGTTGTAG

Protein sequence

MDRQSTKRPRESSEEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWLKESLIYCESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQVPPTTLDDGGGGQAGEEMDCIWSSLLNQPLQQGSRAL
Homology
BLAST of CmoCh03G006350 vs. ExPASy TrEMBL
Match: A0A6J1IJM6 (uncharacterized protein LOC111478029 OS=Cucurbita maxima OX=3661 GN=LOC111478029 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.5e-80
Identity = 149/156 (95.51%), Postives = 152/156 (97.44%), Query Frame = 0

Query: 1   MDRQSTKRPRESSEEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL 60
           M+RQSTKRPRESS EQSSL EIGNGKKQRLHGGSDDAKEPLPRTF+DFDLSFGVFDFPWL
Sbjct: 1   MERQSTKRPRESSAEQSSLLEIGNGKKQRLHGGSDDAKEPLPRTFYDFDLSFGVFDFPWL 60

Query: 61  KESLIYCESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV 120
           KESLIY ESEDWKLDDVFFTSFYNGLSTADAT+IGTELSSGQLVWSNLPDPWEAEYEAQV
Sbjct: 61  KESLIYSESEDWKLDDVFFTSFYNGLSTADATSIGTELSSGQLVWSNLPDPWEAEYEAQV 120

Query: 121 PPTTLDDGGGGQAGEEMDCIWSSLLNQPLQQGSRAL 157
           PPTTLDDGGGGQAGE MDCIWSSLLNQPLQQGSRAL
Sbjct: 121 PPTTLDDGGGGQAGEGMDCIWSSLLNQPLQQGSRAL 156

BLAST of CmoCh03G006350 vs. ExPASy TrEMBL
Match: A0A0A0KH39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510330 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.4e-41
Identity = 102/169 (60.36%), Postives = 116/169 (68.64%), Query Frame = 0

Query: 1   MDRQSTKRPRESSE---------EQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFD-L 60
           M+R +TKRPRESS          +QSSLPEI N K+Q  H   D+A+E  P T FDFD L
Sbjct: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSH---DNAQESSPGTSFDFDLL 60

Query: 61  SFGVFDFPWLKESLIYCESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPD 120
           SFGVFDFPWLK+ LIY +S+DWK +DVFFTS YNG STAD   I T L+ G      LPD
Sbjct: 61  SFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTAD---IATPLTIGTAFTEFLPD 120

Query: 121 PWEAEYEAQV---PPTTLDDGGGGQAGEEMDCIWSSLLNQPLQQGSRAL 157
           PWE +YEAQ    PP +LD  GG Q GE MDCIW S+LNQPLQQGS AL
Sbjct: 121 PWEKDYEAQAPPPPPPSLD--GGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

BLAST of CmoCh03G006350 vs. ExPASy TrEMBL
Match: A0A5A7SLQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00440 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 8.4e-34
Identity = 86/147 (58.50%), Postives = 100/147 (68.03%), Query Frame = 0

Query: 15  EQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFD-LSFGVFDFPWLKESLIYCESEDWK 74
           +QSS PEI N K+Q  H    D +   P T FDFD LSFGVFDFPWLK+ LIY +S+DWK
Sbjct: 3   DQSSPPEIANVKRQHSHDA--DQEYSSPGTSFDFDLLSFGVFDFPWLKDGLIYSKSDDWK 62

Query: 75  LDDVFFTSFYNGLSTADATTIGTELSSGQLVWSN-LPDPWEAEYEAQV---PPTTLDDGG 134
            +DVFFTS YNG S+     I T L+ G   ++  LPDPWE +YEAQ    PP +LD  G
Sbjct: 63  FEDVFFTSVYNGASS--TFDIATPLTIGTKAFTEFLPDPWEKDYEAQALPQPPPSLD--G 122

Query: 135 GGQAGEEMDCIWSSLLNQPLQQGSRAL 157
           G Q GE MDCIW S+LNQPLQQGS AL
Sbjct: 123 GEQGGEGMDCIWRSVLNQPLQQGSSAL 143

BLAST of CmoCh03G006350 vs. ExPASy TrEMBL
Match: A0A6J1BUL5 (uncharacterized protein LOC111005508 OS=Momordica charantia OX=3673 GN=LOC111005508 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.1e-15
Identity = 69/136 (50.74%), Postives = 77/136 (56.62%), Query Frame = 0

Query: 1   MDRQSTKRPRES--------------SEEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFF 60
           MDR +TKR RES                  SS PEIGN KKQ   GG          T  
Sbjct: 1   MDRHNTKRARESLSASAASSDDAVSYERSYSSPPEIGNVKKQHTDGGGGQG-----ATGR 60

Query: 61  DFDLSFGVFDFPWLKESLIYCESEDWKLDDVFFTSF-YNGLSTADAT-TIGTELS--SGQ 116
             DL   VFDFPWLK+SLI  +SEDWK +DVFFTS   NG STAD T TIGT  +  SGQ
Sbjct: 61  SSDLD--VFDFPWLKDSLI-SKSEDWKFEDVFFTSLDSNGASTADDTLTIGTAFTELSGQ 120

BLAST of CmoCh03G006350 vs. ExPASy TrEMBL
Match: A0A7N2LSF2 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 59/167 (35.33%), Postives = 84/167 (50.30%), Query Frame = 0

Query: 1   MDRQST-KRPRESSEE--QSSLPEIGNGKKQR-----LHGGSDDAKEPLPRTFFDFDLSF 60
           M+R++  KR RE  +E  Q+   +I   K+       L+  +DD             L  
Sbjct: 1   MERENQHKRVREGDDEEYQNCSKKIDAEKQDSSKGVDLNDVNDDKDSEKTSCDSSLALDE 60

Query: 61  GVFDFPWLKESLIYCESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWS------ 120
           GVFDFPWLK+ +I  +SEDWKL+D F +S Y+  ST +A     E  +GQ +        
Sbjct: 61  GVFDFPWLKDGMI-SKSEDWKLEDTFSSSLYDTSSTNEAGI--DEFPAGQCLCQTPEPAL 120

Query: 121 -NLPDPWEAEYEAQVPPTTLDDGGGGQAGEEMDCIWSSLLNQPLQQG 153
            N PD  E +++  +     DDG G        CIW+SLL++PLQQG
Sbjct: 121 LNKPDDHEEKFDDNLRRPQEDDGLG--------CIWTSLLSEPLQQG 156

BLAST of CmoCh03G006350 vs. NCBI nr
Match: KAG6603846.1 (hypothetical protein SDJN03_04455, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313.5 bits (802), Expect = 1.0e-81
Identity = 152/156 (97.44%), Postives = 153/156 (98.08%), Query Frame = 0

Query: 1   MDRQSTKRPRESSEEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL 60
           MDRQSTKRPRESS EQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL
Sbjct: 1   MDRQSTKRPRESSAEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL 60

Query: 61  KESLIYCESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV 120
           KESLIY ESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV
Sbjct: 61  KESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV 120

Query: 121 PPTTLDDGGGGQAGEEMDCIWSSLLNQPLQQGSRAL 157
           PPTTLDDGGGGQAGE +DCIWSSLLNQPLQQGSRAL
Sbjct: 121 PPTTLDDGGGGQAGEGIDCIWSSLLNQPLQQGSRAL 156

BLAST of CmoCh03G006350 vs. NCBI nr
Match: XP_022977867.1 (uncharacterized protein LOC111478029 [Cucurbita maxima])

HSP 1 Score: 307.0 bits (785), Expect = 9.4e-80
Identity = 149/156 (95.51%), Postives = 152/156 (97.44%), Query Frame = 0

Query: 1   MDRQSTKRPRESSEEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL 60
           M+RQSTKRPRESS EQSSL EIGNGKKQRLHGGSDDAKEPLPRTF+DFDLSFGVFDFPWL
Sbjct: 1   MERQSTKRPRESSAEQSSLLEIGNGKKQRLHGGSDDAKEPLPRTFYDFDLSFGVFDFPWL 60

Query: 61  KESLIYCESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV 120
           KESLIY ESEDWKLDDVFFTSFYNGLSTADAT+IGTELSSGQLVWSNLPDPWEAEYEAQV
Sbjct: 61  KESLIYSESEDWKLDDVFFTSFYNGLSTADATSIGTELSSGQLVWSNLPDPWEAEYEAQV 120

Query: 121 PPTTLDDGGGGQAGEEMDCIWSSLLNQPLQQGSRAL 157
           PPTTLDDGGGGQAGE MDCIWSSLLNQPLQQGSRAL
Sbjct: 121 PPTTLDDGGGGQAGEGMDCIWSSLLNQPLQQGSRAL 156

BLAST of CmoCh03G006350 vs. NCBI nr
Match: KGN49015.1 (hypothetical protein Csa_004415 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-41
Identity = 102/169 (60.36%), Postives = 116/169 (68.64%), Query Frame = 0

Query: 1   MDRQSTKRPRESSE---------EQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFD-L 60
           M+R +TKRPRESS          +QSSLPEI N K+Q  H   D+A+E  P T FDFD L
Sbjct: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSH---DNAQESSPGTSFDFDLL 60

Query: 61  SFGVFDFPWLKESLIYCESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPD 120
           SFGVFDFPWLK+ LIY +S+DWK +DVFFTS YNG STAD   I T L+ G      LPD
Sbjct: 61  SFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTAD---IATPLTIGTAFTEFLPD 120

Query: 121 PWEAEYEAQV---PPTTLDDGGGGQAGEEMDCIWSSLLNQPLQQGSRAL 157
           PWE +YEAQ    PP +LD  GG Q GE MDCIW S+LNQPLQQGS AL
Sbjct: 121 PWEKDYEAQAPPPPPPSLD--GGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

BLAST of CmoCh03G006350 vs. NCBI nr
Match: KAG6594718.1 (hypothetical protein SDJN03_11271, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-36
Identity = 96/172 (55.81%), Postives = 109/172 (63.37%), Query Frame = 0

Query: 1   MDRQSTKRPRESS---------------EEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTF 60
           MDR++ KRPRESS                EQSS PEIGNG+K++   G            
Sbjct: 1   MDRRNAKRPRESSSSSSSSSSSSSAGVRNEQSSQPEIGNGEKRQHVEGFG--------RL 60

Query: 61  FDFDLSFGVFDFPWLKESLIYCESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVW 120
           FD DLSFGVFDFPWLK+SLIY + EDWK++DVFFTSF    +TAD     TE S  QLVW
Sbjct: 61  FDLDLSFGVFDFPWLKDSLIYSKYEDWKVEDVFFTSFDGVSTTADIAL--TEWSE-QLVW 120

Query: 121 SNLPDPWEAEYEAQVPPTTLD----DGGGGQAGEEMDCIWSSLLNQPLQQGS 154
            NLPDPWE EYEA V P T      + G G AGE MDC+W+SLLNQPLQQGS
Sbjct: 121 CNLPDPWEEEYEAHVAPATATATAVEDGEGPAGEGMDCVWNSLLNQPLQQGS 161

BLAST of CmoCh03G006350 vs. NCBI nr
Match: KAA0025593.1 (hypothetical protein E6C27_scaffold253G00830 [Cucumis melo var. makuwa] >TYK12468.1 hypothetical protein E5676_scaffold255G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-33
Identity = 86/147 (58.50%), Postives = 100/147 (68.03%), Query Frame = 0

Query: 15  EQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFD-LSFGVFDFPWLKESLIYCESEDWK 74
           +QSS PEI N K+Q  H    D +   P T FDFD LSFGVFDFPWLK+ LIY +S+DWK
Sbjct: 3   DQSSPPEIANVKRQHSHDA--DQEYSSPGTSFDFDLLSFGVFDFPWLKDGLIYSKSDDWK 62

Query: 75  LDDVFFTSFYNGLSTADATTIGTELSSGQLVWSN-LPDPWEAEYEAQV---PPTTLDDGG 134
            +DVFFTS YNG S+     I T L+ G   ++  LPDPWE +YEAQ    PP +LD  G
Sbjct: 63  FEDVFFTSVYNGASS--TFDIATPLTIGTKAFTEFLPDPWEKDYEAQALPQPPPSLD--G 122

Query: 135 GGQAGEEMDCIWSSLLNQPLQQGSRAL 157
           G Q GE MDCIW S+LNQPLQQGS AL
Sbjct: 123 GEQGGEGMDCIWRSVLNQPLQQGSSAL 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IJM64.5e-8095.51uncharacterized protein LOC111478029 OS=Cucurbita maxima OX=3661 GN=LOC111478029... [more]
A0A0A0KH391.4e-4160.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510330 PE=4 SV=1[more]
A0A5A7SLQ68.4e-3458.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1BUL55.1e-1550.74uncharacterized protein LOC111005508 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A7N2LSF21.9e-0935.33Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6603846.11.0e-8197.44hypothetical protein SDJN03_04455, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022977867.19.4e-8095.51uncharacterized protein LOC111478029 [Cucurbita maxima][more]
KGN49015.12.9e-4160.36hypothetical protein Csa_004415 [Cucumis sativus][more]
KAG6594718.12.2e-3655.81hypothetical protein SDJN03_11271, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0025593.11.7e-3358.50hypothetical protein E6C27_scaffold253G00830 [Cucumis melo var. makuwa] >TYK1246... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G006350.1CmoCh03G006350.1mRNA