CmoCh03G005530 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G005530
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Patatin
Location	Cmo_Chr03: 5512508 .. 5513208 (+)
RNA-Seq Expression	CmoCh03G005530
Synteny	CmoCh03G005530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTCTCTGAGAAAATGGGTGGTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATTGAGTACTTCACCAAGTTTGAGGTGGAACGCCATGGCAGCTCTCAGAGGATAAGTGGAGATGCTTCGAGGAGAAGCGATTGTAAGGGAAGCTTTTGGCTTGTGTCCTTGACTTGGAAGTGGAAGAAGAGAAAAGGCAATAATGGGATTCTCCCCAACAATTGCAGGCTGTTGAATTGTCAAAAAGCAATCGCTTCAATGGGATTCCTGGTTTCAGTTACAGGATTCTCAAACACGACTTTCCCATTTGATCTTCATTTCCTGCTCCACTTCTAAAGGGTCTCGTTTCTTTGTTTTGCTTCTGATTTCCCTTATCTGTTTGTGCTTCATTTCGAGGATTGCAACGTTTTTTCTTTACTGGAGAAGGAAATTAAGCCATGGCGGCTCTCAAAAGAAGATTGTATTTGGAACTATCATTACTCTTTCTTTTCTTCTTCATTCTAACAAGAGTGAGATTGAAGGGCATCCATAATGTTTATAGCATAAATCAACAAATCTTATGATTTTTCTTCAATTGGAAGGTTTTGAACATTGGGACCTTGAAAATGGGATATAATGGAGATACTAGCTTGTTTTGTGTTCATACATGGTAG

mRNA sequence

ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTCTCTGAGAAAATGGGTGGTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATTGAGTACTTCACCAAGTTTGAGGTGGAACGCCATGGCAGCTCTCAGAGGATAAGTGGAGATGCTTCGAGGAGAAGCGATTGTAAGGGAAGCTTTTGGCTTGTGTCCTTGACTTGGAAGTGGAAGAAGAGAAAAGGCAATAATGGGATTCTCCCCAACAATTGCAGGCTGTTGAATTGTCAAAAAGCAATCGCTTCAATGGGATTCCTGGTTTTGAACATTGGGACCTTGAAAATGGGATATAATGGAGATACTAGCTTGTTTTGTGTTCATACATGGTAG

Coding sequence (CDS)

ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTCTCTGAGAAAATGGGTGGTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATTGAGTACTTCACCAAGTTTGAGGTGGAACGCCATGGCAGCTCTCAGAGGATAAGTGGAGATGCTTCGAGGAGAAGCGATTGTAAGGGAAGCTTTTGGCTTGTGTCCTTGACTTGGAAGTGGAAGAAGAGAAAAGGCAATAATGGGATTCTCCCCAACAATTGCAGGCTGTTGAATTGTCAAAAAGCAATCGCTTCAATGGGATTCCTGGTTTTGAACATTGGGACCTTGAAAATGGGATATAATGGAGATACTAGCTTGTTTTGTGTTCATACATGGTAG

Protein sequence

MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKAIASMGFLVLNIGTLKMGYNGDTSLFCVHTW

Homology

[Close]

BLAST of CmoCh03G005530 vs. ExPASy TrEMBL
Match: A0A6J1IJL8 (uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.6e-44
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60
           MYKGMSRSRSFSEKM G+APLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR
Sbjct: 1   MYKGMSRSRSFSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60

Query: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA 100
           RSDCKGSFWLVSLTWKWKKRKGNNGILPN C  +   K+
Sbjct: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKS 99

[Close]

BLAST of CmoCh03G005530 vs. ExPASy TrEMBL
Match: A0A0A0KL84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514830 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.4e-36
Identity = 78/90 (86.67%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDAS 60
          MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISG+A 
Sbjct: 1  MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61 RRSDCKGSFWLVSLTWKWKKRKGNNGILPN 90
          RRSD +GSFWL+SLTWKWKKRKGNNG+LPN
Sbjct: 61 RRSDSRGSFWLLSLTWKWKKRKGNNGVLPN 90

[Close]

BLAST of CmoCh03G005530 vs. ExPASy TrEMBL
Match: A0A6J1EEE9 (uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC111433571 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60
           MY+G+SRS SFSE+MG VAPLAIGTRGT+GSLVMKEIEYFTK E+ERHG SQR+SGDASR
Sbjct: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60

Query: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA-----IASMGFLVL 109
           RSD K SFWL+SL+WKWKKR+ NNGILPN C  +   K+     I   G+ +L
Sbjct: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRIL 113

[Close]

BLAST of CmoCh03G005530 vs. ExPASy TrEMBL
Match: A0A6J1KQQ8 (uncharacterized protein LOC111497407 OS=Cucurbita maxima OX=3661 GN=LOC111497407 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.8e-35
Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60
           MY+G+SRS SFSE+MG VAPLAIGTRGT+GSLVMKEIEYFTK E+ERHG SQR+SGDASR
Sbjct: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60

Query: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA-----IASMGFLVL 109
           RSD + SFWL+SL+WKWKKR+ NNGILPN C  +   K+     I   G+ +L
Sbjct: 61  RSDSRTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRIL 113

[Close]

BLAST of CmoCh03G005530 vs. ExPASy TrEMBL
Match: A0A5D3CRM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006580 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.7e-35
Identity = 78/90 (86.67%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 1  MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDAS 60
          MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFT  E+ERHGSS  I G+A 
Sbjct: 1  MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61 RRSDCKGSFWLVSLTWKWKKRKGNNGILPN 90
          RRSD KGSFWL+SLTWKWKKRK NNGILPN
Sbjct: 61 RRSDSKGSFWLLSLTWKWKKRKNNNGILPN 90

[Close]

BLAST of CmoCh03G005530 vs. NCBI nr
Match: XP_022977336.1 (uncharacterized protein LOC111477686 [Cucurbita maxima])

HSP 1 Score: 186.0 bits (471), Expect = 2.0e-43
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60
           MYKGMSRSRSFSEKM G+APLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR
Sbjct: 1   MYKGMSRSRSFSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60

Query: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA 100
           RSDCKGSFWLVSLTWKWKKRKGNNGILPN C  +   K+
Sbjct: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKS 99

[Close]

BLAST of CmoCh03G005530 vs. NCBI nr
Match: KAG6603769.1 (hypothetical protein SDJN03_04378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.7 bits (465), Expect = 9.9e-43
Identity = 88/99 (88.89%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60
           MYKGMSRSRS SEKM G+APLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR
Sbjct: 1   MYKGMSRSRSLSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60

Query: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA 100
           RSDCKGSFWLVSLTWKWKKRKGNNGILPN C  +   K+
Sbjct: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKS 99

[Close]

BLAST of CmoCh03G005530 vs. NCBI nr
Match: XP_038882225.1 (uncharacterized protein LOC120073447 [Benincasa hispida])

HSP 1 Score: 169.9 bits (429), Expect = 1.5e-38
Identity = 85/113 (75.22%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60
           MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISGDA R
Sbjct: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDALR 60

Query: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA-----IASMGFLVL 109
           RSD KGSFWL+SLTWKWKKRK NNGILPN C  +   K+     I   G+ +L
Sbjct: 61  RSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRIL 113

[Close]

BLAST of CmoCh03G005530 vs. NCBI nr
Match: XP_011658506.1 (uncharacterized protein LOC105436036 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 78/90 (86.67%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDAS 60
          MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISG+A 
Sbjct: 1  MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61 RRSDCKGSFWLVSLTWKWKKRKGNNGILPN 90
          RRSD +GSFWL+SLTWKWKKRKGNNG+LPN
Sbjct: 61 RRSDSRGSFWLLSLTWKWKKRKGNNGVLPN 90

[Close]

BLAST of CmoCh03G005530 vs. NCBI nr
Match: KAE8647663.1 (hypothetical protein Csa_003863 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 78/90 (86.67%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDAS 60
          MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISG+A 
Sbjct: 1  MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61 RRSDCKGSFWLVSLTWKWKKRKGNNGILPN 90
          RRSD +GSFWL+SLTWKWKKRKGNNG+LPN
Sbjct: 61 RRSDSRGSFWLLSLTWKWKKRKGNNGVLPN 90

[Close]

BLAST of CmoCh03G005530 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-07
Identity = 32/84 (38.10%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 19 APLAIGTRGTVGSLVMKEIEYFTKFEV------ERHGSSQRISGDASR--RSDCKGSFWL 78
          AP+AIGTRGT+GSLV KEI+YF  F         R G+S+       +  RS  +   W 
Sbjct: 3  APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 79 VSLTWKWKKRK---GNNGILPNNC 92
              W+ KKR+   G     P+ C
Sbjct: 63 SKTKWRKKKRQTRGGGGKFFPSMC 86

The following BLAST results are available for this feature:

BLAST of CmoCh03G005530 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G005530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IJL8	9.6e-44	89.90	uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686...	[more]
A0A0A0KL84	7.4e-36	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514830 PE=4 SV=1	[more]
A0A6J1EEE9	1.3e-35	69.03	uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC1114335...	[more]
A0A6J1KQQ8	2.8e-35	68.14	uncharacterized protein LOC111497407 OS=Cucurbita maxima OX=3661 GN=LOC111497407...	[more]
A0A5D3CRM5	3.7e-35	86.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh03G005530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977336.1	2.0e-43	89.90	uncharacterized protein LOC111477686 [Cucurbita maxima]	[more]
KAG6603769.1	9.9e-43	88.89	hypothetical protein SDJN03_04378, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038882225.1	1.5e-38	75.22	uncharacterized protein LOC120073447 [Benincasa hispida]	[more]
XP_011658506.1	1.5e-35	86.67	uncharacterized protein LOC105436036 [Cucumis sativus]	[more]
KAE8647663.1	1.5e-35	86.67	hypothetical protein Csa_003863 [Cucumis sativus]	[more]

BLAST of CmoCh03G005530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21780.1	1.9e-07	38.10	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35131	EXPRESSED PROTEIN	coord: 7..102
None	No IPR available	PANTHER	PTHR35131:SF1	EXPRESSED PROTEIN	coord: 7..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G005530.1	CmoCh03G005530.1	mRNA