CmoCh03G005010 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G005010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr03: 5288189 .. 5290085 (+)
RNA-Seq ExpressionCmoCh03G005010
SyntenyCmoCh03G005010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGAAACTGCGATGCCCTTTTCCATGGCGTCCATCAATTTGTGTATACGTGTCATTTTTTTTTATTTTAATTTTTAATTAGGGATTTATGGAGTGAGGTGTGTTTAAATTAGCATGCTTAATTACTGTAAAATAATAATATTATTATTGAAATTTTATAAATTCTCAAACAATTAATCCAAATTTATCATGCACGAAAAAGGAAAATATAATTTTAACTACATATAAAAATTATATTTATAAATAATTTTTTTTAAAAGTAAACCTATAAATAACTTATTAAATAAATAGAACGGTATTTTTTTAAATTTTACTTATTAAATAAATTCACAAAATAAAAAATTTAAGAATTTATTTAAGAAAAATTATCATAAAATAGTAATTTAACAATAATATTATTTTACAATTTTGAGAAAACCCAAATAATAATTATGAAAGCAAATTTCTTTTAAAAAAGAAATACTTCTAGAAGTATATGATCCACGATGTAACGACCCAGATCCACCGCTAGCAGATATTGTCCTGTTTGAGCTTTTACTTTCAAGTTTTCCCTCAAGACTTTAAAACGCGTATATAGAAGAAGGTTTCTAAACCCATGGTGGTTTGTTCTCCTCCCAAATCAATGTTCGACATCACAATCCACCGCTTTCAGGGCCCCCTTTAGGGCCCAAGAGATGTGGGACCGCCCCTAAATTCAGTCCCTTTGGAGCCAGCATCCTTACTGGCACACCGCCTCGTGTCTACCCCTTTGGGGAACAACGAGAAGGCTGTCACATCGTTTGGTGTCTGGCTCTGATACCATTTGTAACGATCTAGATCCACCGCTAGCAGATATTGTCCCATCTGTAAAGGCTTTAGATGGGTTTTAAAGCCTTGAGGGGAAACCTGAAGGGAAAAGCTTAAAGAAGACAATATCTCCGGTGGATCTGGGTCGTTACACGCGTATTTTTATATCAATAAATGAATTATATAATATAATATAAAATGATTCAATAAATAAAATACATGAACCTCCGCCATTCCAATTCCGCAACCGCAGTACCCGGCGGCGGTGTCTCACTTAGTAAATTAATAAAGAAATAAAACCGGCGGCTGGTATTGCCGGGAGAGGTGCCATGTGGTTCAGGTAAAGCGAACAAAATGCCAGCGTGTCCCCTTAGGTGTGGGTCAGGGGAGCCTCCACCTGCCCAGATTCTTTATTTATTTATTGTTAGTGGAAGCCATTAAACACGTTTTTCTTTTAAAGTTTTGGTCAAAATGGATTCAAAAGCACAAACTCCCAAAAACTTTCATAGTAAATCAATCAAATCAAACTCCATTTTCATTCTTTTATGAACAAATGATTCTCCTTTATCCTGTTCTTACGGTCGAATCCCATTCTTTCCCTGAAAAACCCAAAATACCCTTGGCTTTTACCAAATGTCCCCGCTAAGCCGGTCTGATCCGGGAGGAGAAAATGGTAATTTCAGACATATAAAAATCCAAAACACAGCTGTTGTGCAAAAGCCAAGACTACCTACGAACAAATTTAAAAAAGAGGGTATTACAGAGTGCGTATCAAGCAAGTTCATCAGCAAAGGACATGCTTATCTACAAATAATTTTGGGTCTATAAATAAACCCATCTCGTGGAGGCTTTTGAGTATCCAAAACTTCATCCACAAGAACAAATCATCTCTCTGTTTATAGAAGAAATTTGCAGTGATGGGTGAAGAGGGTAGGGCGATGAACAACGGCGGTCGGAGAGTTTCTGGGCGTCTGATCCCGAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTCTCACCTCTATCTTTGTAAATCAGAAACACAACAGTAGCAGCAACAACAACATTGTACATAACAGAAACATGTTGTAA

mRNA sequence

ATGAGGAAGAAACTGCGATGCCCTTTTCCATGGCGTCCATCAATTTGTAAGAAATTTGCAGTGATGGGTGAAGAGGGTAGGGCGATGAACAACGGCGGTCGGAGAGTTTCTGGGCGTCTGATCCCGAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTCTCACCTCTATCTTTGTAAATCAGAAACACAACAGTAGCAGCAACAACAACATTGTACATAACAGAAACATGTTGTAA

Coding sequence (CDS)

ATGAGGAAGAAACTGCGATGCCCTTTTCCATGGCGTCCATCAATTTGTAAGAAATTTGCAGTGATGGGTGAAGAGGGTAGGGCGATGAACAACGGCGGTCGGAGAGTTTCTGGGCGTCTGATCCCGAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTCTCACCTCTATCTTTGTAAATCAGAAACACAACAGTAGCAGCAACAACAACATTGTACATAACAGAAACATGTTGTAA

Protein sequence

MRKKLRCPFPWRPSICKKFAVMGEEGRAMNNGGRRVSGRLIPKRGQVKMGIMVGLAQTLTSIFVNQKHNSSSNNNIVHNRNML
Homology
[Close]
BLAST of CmoCh03G005010 vs. ExPASy TrEMBL
Match: A0A5A7UDZ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007170 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 22 MGEEGRAMNN-----GGRRVSGRLIPKRGQVKMGIMVGLAQTLTSIFVN 66
          MGEE + MNN      GRR+SGRLIPKRGQVKMGIMVGLAQT+TSIF N
Sbjct: 1  MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSN 49

[Close]
BLAST of CmoCh03G005010 vs. ExPASy TrEMBL
Match: V4UE85 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017282mg PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.3e-05
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 6  RCPFPWRPSICKKFAVMGEEGRAMNNGG----RRVSGRLIPKRGQVKMGIMVGLAQTLTS 65
          R P  ++P+   K A  G     M NGG    R  SGRLIPKRGQVK+GI++GLA +  S
Sbjct: 20 RFPCCFKPTNSLKMAATGTRNGTMINGGGCSKRYASGRLIPKRGQVKLGIVLGLANSFAS 79

Query: 66 IFVNQKHNSSSNNNIVH 79
          IF    +  +S+  + H
Sbjct: 80 IFSPSSNKRASSTRLSH 96

[Close]
BLAST of CmoCh03G005010 vs. ExPASy TrEMBL
Match: A0A251PFD5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G039200 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.4e-05
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 26 GRAMNNGG---RRVSGRLIPKRGQVKMGIMVGLAQTLTSIFVNQK-----HNSSSNNN 76
          GRAM NGG   RR+SGR IPKRGQVKMGI+VGLA ++ SIF   +     H+ S NN+
Sbjct: 9  GRAMMNGGDLSRRLSGRPIPKRGQVKMGIVVGLANSVASIFGPHRRRPSMHSQSRNNS 66

[Close]
BLAST of CmoCh03G005010 vs. ExPASy TrEMBL
Match: A0A6J5UIS5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS24973 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.8e-04
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 26 GRAMNNGG---RRVSGRLIPKRGQVKMGIMVGLAQTLTSIFVNQK----HNSSSNNN 76
          GRAM NGG   RR+S R IPKRGQVKMGI+VGLA ++ SIF   +    H+ S NN+
Sbjct: 9  GRAMMNGGDLSRRLSARPIPKRGQVKMGIVVGLANSVASIFGPHRRPSMHSQSRNNS 65

[Close]
BLAST of CmoCh03G005010 vs. ExPASy TrEMBL
Match: A0A314YFB0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_15377 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.8e-04
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 26 GRAMNNGG---RRVSGRLIPKRGQVKMGIMVGLAQTLTSIFVNQK----HNSSSNNN 76
          GRAM NGG   RR+SGR IPKRGQVKMGI+VGLA ++ SIF   +    H  S N++
Sbjct: 9  GRAMMNGGDLSRRLSGRPIPKRGQVKMGIVVGLANSVASIFGPHRRPSMHKQSRNHS 65

[Close]
BLAST of CmoCh03G005010 vs. NCBI nr
Match: KAA0052717.1 (hypothetical protein E6C27_scaffold120G003300 [Cucumis melo var. makuwa] >TYK13107.1 hypothetical protein E5676_scaffold255G007170 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 22 MGEEGRAMNN-----GGRRVSGRLIPKRGQVKMGIMVGLAQTLTSIFVN 66
          MGEE + MNN      GRR+SGRLIPKRGQVKMGIMVGLAQT+TSIF N
Sbjct: 1  MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSN 49

[Close]
BLAST of CmoCh03G005010 vs. NCBI nr
Match: ESR62490.1 (hypothetical protein CICLE_v10017282mg [Citrus clementina])

HSP 1 Score: 57.4 bits (137), Expect = 6.9e-05
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 6  RCPFPWRPSICKKFAVMGEEGRAMNNGG----RRVSGRLIPKRGQVKMGIMVGLAQTLTS 65
          R P  ++P+   K A  G     M NGG    R  SGRLIPKRGQVK+GI++GLA +  S
Sbjct: 20 RFPCCFKPTNSLKMAATGTRNGTMINGGGCSKRYASGRLIPKRGQVKLGIVLGLANSFAS 79

Query: 66 IFVNQKHNSSSNNNIVH 79
          IF    +  +S+  + H
Sbjct: 80 IFSPSSNKRASSTRLSH 96

[Close]
BLAST of CmoCh03G005010 vs. NCBI nr
Match: ONI10293.1 (hypothetical protein PRUPE_4G039200 [Prunus persica])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 26 GRAMNNGG---RRVSGRLIPKRGQVKMGIMVGLAQTLTSIFVNQK-----HNSSSNNN 76
          GRAM NGG   RR+SGR IPKRGQVKMGI+VGLA ++ SIF   +     H+ S NN+
Sbjct: 9  GRAMMNGGDLSRRLSGRPIPKRGQVKMGIVVGLANSVASIFGPHRRRPSMHSQSRNNS 66

[Close]
BLAST of CmoCh03G005010 vs. NCBI nr
Match: PQQ07225.1 (hypothetical protein Pyn_15377 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 54.3 bits (129), Expect = 5.8e-04
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 26 GRAMNNGG---RRVSGRLIPKRGQVKMGIMVGLAQTLTSIFVNQK----HNSSSNNN 76
          GRAM NGG   RR+SGR IPKRGQVKMGI+VGLA ++ SIF   +    H  S N++
Sbjct: 9  GRAMMNGGDLSRRLSGRPIPKRGQVKMGIVVGLANSVASIFGPHRRPSMHKQSRNHS 65

[Close]
BLAST of CmoCh03G005010 vs. NCBI nr
Match: CAB4275981.1 (unnamed protein product [Prunus armeniaca] >CAB4306364.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 54.3 bits (129), Expect = 5.8e-04
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 26 GRAMNNGG---RRVSGRLIPKRGQVKMGIMVGLAQTLTSIFVNQK----HNSSSNNN 76
          GRAM NGG   RR+S R IPKRGQVKMGI+VGLA ++ SIF   +    H+ S NN+
Sbjct: 9  GRAMMNGGDLSRRLSARPIPKRGQVKMGIVVGLANSVASIFGPHRRPSMHSQSRNNS 65

The following BLAST results are available for this feature:
BLAST of CmoCh03G005010 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G005010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UDZ48.5e-0975.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
V4UE853.3e-0542.86Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017282mg PE=4 ... [more]
A0A251PFD57.4e-0558.62Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G039200 PE=4 SV=1[more]
A0A6J5UIS52.8e-0457.89Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS24973 PE=4 S... [more]
A0A314YFB02.8e-0457.89Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_153... [more]
BLAST of CmoCh03G005010 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052717.11.7e-0875.51hypothetical protein E6C27_scaffold120G003300 [Cucumis melo var. makuwa] >TYK131... [more]
ESR62490.16.9e-0542.86hypothetical protein CICLE_v10017282mg [Citrus clementina][more]
ONI10293.11.5e-0458.62hypothetical protein PRUPE_4G039200 [Prunus persica][more]
PQQ07225.15.8e-0457.89hypothetical protein Pyn_15377 [Prunus yedoensis var. nudiflora][more]
CAB4275981.15.8e-0457.89unnamed protein product [Prunus armeniaca] >CAB4306364.1 unnamed protein product... [more]
BLAST of CmoCh03G005010 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 73..83
NoneNo IPR availablePANTHERPTHR36615PROTEIN, PUTATIVE-RELATEDcoord: 27..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G005010.1CmoCh03G005010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane